Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Reverse (-)

16078179 .. 16079186

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0103100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGGTGTTGCCGGACGGGAGTTGGGGGTCTTGGGACCTTCGATCTTGTCTTCTTTGCGGTGGTCGGGGCTTGGCATGATTCTTCTCTGCTCTCAGGCAGAGGCGCAGGCGGGGAGGAGGAATTCGGCGGCGACGCAGGCTTGGAGCAAGGGGTCAGAGGCCAGATCGTGGCGGCGGCTTGCCATGGATCGTATGGCGCTGATCTCTGTTAGGAGGTGGGTCGATCGGCGATGTTTGCAGCTGTGGGCTCGGGCTCCCGGGAGGATGGGCACAGATGGGTGGAGCGATTTCGTTCCGAGGTGGAAGTGCTCGGCGATTCCATTCATGTTTCTCGGTGGATTGGATTGGAGTGGATGTGTTTCCAGATCTGGATCCGGTCGACGACAGGCATGTGAATCGGTGTGGCTTGCGGTGTTGAATGGGTACCTCTGGGGTGGTGAGCTCGAAGGGCAAGAGTTGTGGCGGTGGTCTGCCGGCGGGCAAATTGGAGAGAGGGAAGTTATGTGTCATAGCTTTGGTCTGGTGCTTGAAGGGATGGTCAATCATGGTAGTTTCTTTCAGTTTTTTACTAGGGTTTTAGTTTCAGGTTTTTGGTTAGGTCGAATAAATCGTCCCTACTCTTTTGAGCTAGGGTTTGGAGGTTCTAGTCGTGTTATGGAGCCATCTATATGGTGTTACTCCTGGGAACAATATGTTATAATTTCGATGCTGGTTGGTTATCAATGGAAAGGTGGATTTCCCTTGCACGTGGTCTGGCGGTTTATGGACACGGTGTGGAAGAGGGTGGAGTGGTTCGTCTGGATGTTGGTGACGAGGTTGTATCGTGACGCTCGGGATTGGTTATCGTTATTTGTAGCCTGGGGTGATAGGCGGAAAAATTGGTTAGGGGTTGGACCTTTTCGGTTCATGGATGTTACTATTAGTGACGGACCCATAACTATGGATCTTGGTAGGAATATGTGTCGTGGTGTTGATACCACAACCGGTTATTCCAATGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

335

Amino Acids

38.19

Weight (kDa)

9.72

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	382
AclWI	GGATC	4 cut(s)	198, 369, 382, 954
AcsI	RAATTY	1 cut(s)	124
AcvI	CACGTG	1 cut(s)	751
AdeI	CACNNNGTG	1 cut(s)	777
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	986
AgsI	TTSAA	2 cut(s)	421, 533
AjnI	CCWGG	2 cut(s)	683, 860
AluBI	AGCT	4 cut(s)	244, 445, 516, 631
AluI	AGCT	4 cut(s)	244, 445, 516, 631
Alw21I	GWGCWC	2 cut(s)	314, 447
AlwI	GGATC	4 cut(s)	198, 369, 382, 954
Ama87I	CYCGRG	3 cut(s)	252, 260, 834
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AsiGI	ACCGGT	1 cut(s)	986
Asp718I	GGTACC	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	109, 202
AspS9I	GGNCC	3 cut(s)	38, 896, 932
AsuC2I	CCSGG	2 cut(s)	261, 262
AsuHPI	GGTGA	3 cut(s)	452, 823, 878
AvaI	CYCGRG	3 cut(s)	252, 260, 834
AvaII	GGWCC	3 cut(s)	38, 896, 932
BaeGI	GKGCMC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	3 cut(s)	253, 259, 447
BbrPI	CACGTG	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	314, 447
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	262, 272, 532, 673
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BciT130I	CCWGG	2 cut(s)	685, 862
BcnI	CCSGG	2 cut(s)	261, 262
BfaI	CTAG	3 cut(s)	573, 632, 648
BfoI	RGCGCY	1 cut(s)	203
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	4 cut(s)	132, 176, 179, 242
BlsI	GCNGC	4 cut(s)	133, 177, 180, 243
Bme1390I	CCNGG	4 cut(s)	261, 262, 685, 862
Bme18I	GGWCC	3 cut(s)	38, 896, 932
BmeT110I	CYCGRG	3 cut(s)	252, 260, 834
BmgT120I	GGNCC	3 cut(s)	38, 896, 932
BmiI	GGNNCC	6 cut(s)	39, 258, 376, 428, 663, 934
BmrFI	CCNGG	4 cut(s)	261, 262, 685, 862
BmsI	GCATC	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	261, 262
BsaAI	YACGTR	1 cut(s)	751
BsaBI	GATNNNNATC	1 cut(s)	373
BsaJI	CCNNGG	5 cut(s)	186, 260, 299, 684, 861
BsaWI	WCCGGW	2 cut(s)	377, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse118I	RCCGGY	2 cut(s)	476, 986
Bse8I	GATNNNNATC	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	685, 862
BseDI	CCNNGG	5 cut(s)	186, 260, 299, 684, 861
BseGI	GGATG	5 cut(s)	273, 362, 543, 810, 919
BseJI	GATNNNNATC	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	253
Bsh1285I	CGRYCG	2 cut(s)	229, 382
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	426
BshTI	ACCGGT	1 cut(s)	986
BsiEI	CGRYCG	2 cut(s)	229, 382
BsiHKAI	GWGCWC	2 cut(s)	314, 447
BsiHKCI	CYCGRG	3 cut(s)	252, 260, 834
BsiSI	CCGG	5 cut(s)	15, 261, 378, 477, 987
BslFI	GGGAC	2 cut(s)	51, 600
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmFI	GGGAC	2 cut(s)	51, 600
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	3 cut(s)	252, 260, 834
Bsp1286I	GDGCHC	5 cut(s)	253, 259, 275, 314, 447
Bsp143I	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	6 cut(s)	39, 258, 376, 428, 663, 934
BspPI	GGATC	4 cut(s)	198, 369, 382, 954
BspT107I	GGYRCC	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	476, 986
BssAI	RCCGGY	2 cut(s)	476, 986
BssECI	CCNNGG	5 cut(s)	186, 260, 299, 684, 861
BssMI	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	685, 862
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	776
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	751
BstC8I	GCNNGC	6 cut(s)	111, 141, 183, 411, 478, 482
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	5 cut(s)	273, 362, 543, 810, 919
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	109, 202
BstKTI	GATC	8 cut(s)	48, 170, 193, 207, 229, 371, 377, 949
BstMBI	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
BstMCI	CGRYCG	2 cut(s)	229, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 140, 238, 451
BstNI	CCWGG	2 cut(s)	685, 862
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	4 cut(s)	259, 260, 683, 860
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	3 cut(s)	368, 374, 946
BstXI	CCANNNNNNTGG	2 cut(s)	672, 943
BstYI	RGATCY	3 cut(s)	368, 374, 946
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	5 cut(s)	273, 362, 543, 810, 919
Cac8I	GCNNGC	6 cut(s)	111, 141, 183, 411, 478, 482
CfoI	GCGC	2 cut(s)	109, 202
Cfr10I	RCCGGY	2 cut(s)	476, 986
Cfr13I	GGNCC	3 cut(s)	38, 896, 932
Cfr9I	CCCGGG	1 cut(s)	260
CseI	GACGC	2 cut(s)	145, 839
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	986
CspCI	CAANNNNNGTGG	2 cut(s)	443, 478
CviAII	CATG	6 cut(s)	79, 187, 328, 393, 548, 910
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	8 cut(s)	47, 169, 192, 206, 228, 370, 376, 948
DpnII	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
DraIII	CACNNNGTG	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
EciI	GGCGGA	1 cut(s)	889
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	3 cut(s)	253, 259, 447
Eco47I	GGWCC	3 cut(s)	38, 896, 932
Eco53kI	GAGCTC	1 cut(s)	445
Eco72I	CACGTG	1 cut(s)	751
Eco88I	CYCGRG	3 cut(s)	252, 260, 834
EcoICRI	GAGCTC	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	683, 860
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	3 cut(s)	253, 259, 447
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	6 cut(s)	82, 190, 331, 396, 551, 913
FaqI	GGGAC	2 cut(s)	51, 600
FatI	CATG	6 cut(s)	78, 186, 327, 392, 547, 909
FauI	CCCGC	2 cut(s)	106, 473
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	4 cut(s)	132, 176, 179, 242
FokI	GGATG	5 cut(s)	280, 369, 550, 817, 926
FriOI	GRGCYC	3 cut(s)	253, 259, 447
Fsp4HI	GCNGC	4 cut(s)	132, 176, 179, 242
FspBI	CTAG	3 cut(s)	573, 632, 648
GlaI	GCGC	2 cut(s)	108, 201
GluI	GCNGC	4 cut(s)	132, 176, 179, 242
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	5 cut(s)	15, 261, 378, 477, 987
HgaI	GACGC	2 cut(s)	145, 839
HhaI	GCGC	2 cut(s)	109, 202
Hin1II	CATG	6 cut(s)	82, 190, 331, 396, 551, 913
Hin6I	GCGC	2 cut(s)	107, 200
HinP1I	GCGC	2 cut(s)	107, 200
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HinfI	GANTC	3 cut(s)	82, 319, 398
HpaII	CCGG	5 cut(s)	15, 261, 378, 477, 987
HphI	GGTGA	3 cut(s)	452, 823, 878
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	2 cut(s)	160, 300
Hpy188III	TCNNGA	5 cut(s)	366, 372, 802, 827, 836
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	2 cut(s)	139, 387
HpyAV	CCTTC	3 cut(s)	51, 443, 527
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	2 cut(s)	241, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 140, 238, 451
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	6 cut(s)	82, 190, 331, 396, 551, 913
HspAI	GCGC	2 cut(s)	107, 200
KpnI	GGTACC	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	476
KroNI	GCCGGC	1 cut(s)	478
Kzo9I	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
LmnI	GCTCC	4 cut(s)	147, 262, 285, 661
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	699
MaeI	CTAG	3 cut(s)	573, 632, 648
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	5 cut(s)	677, 811, 827, 916, 926
MalI	GATC	8 cut(s)	47, 169, 192, 206, 228, 370, 376, 948
MboI	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
MboII	GAAGA	3 cut(s)	45, 77, 793
MflI	RGATCY	3 cut(s)	368, 374, 946
MhlI	GDGCHC	5 cut(s)	253, 259, 275, 314, 447
MluCI	AATT	4 cut(s)	124, 486, 702, 880
MmeI	TCCRAC	1 cut(s)	874
MroNI	GCCGGC	1 cut(s)	476
MslI	CAYNNNNRTG	2 cut(s)	670, 941
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	5 cut(s)	15, 261, 378, 477, 987
MspR9I	CCNGG	4 cut(s)	261, 262, 685, 862
MvaI	CCWGG	2 cut(s)	685, 862
MwoI	GCNNNNNNNGC	4 cut(s)	11, 140, 238, 451
NaeI	GCCGGC	1 cut(s)	478
NciI	CCSGG	2 cut(s)	261, 262
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
NgoMIV	GCCGGC	1 cut(s)	476
NlaIII	CATG	6 cut(s)	82, 190, 331, 396, 551, 913
NlaIV	GGNNCC	6 cut(s)	39, 258, 376, 428, 663, 934
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	3 cut(s)	811, 827, 926
NspI	RCATGY	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PdiI	GCCGGC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	82, 319, 398
PflMI	CCANNNNNTGG	1 cut(s)	171
PinAI	ACCGGT	1 cut(s)	986
PkrI	GCNGC	4 cut(s)	133, 177, 180, 243
Ple19I	CGATCG	1 cut(s)	229
PmaCI	CACGTG	1 cut(s)	751
PmlI	CACGTG	1 cut(s)	751
Ppu21I	YACGTR	1 cut(s)	751
PpuMI	RGGWCCY	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	683, 860
PspCI	CACGTG	1 cut(s)	751
PspGI	CCWGG	2 cut(s)	683, 860
PspN4I	GGNNCC	6 cut(s)	39, 258, 376, 428, 663, 934
PspPI	GGNCC	3 cut(s)	38, 896, 932
PspPPI	RGGWCCY	1 cut(s)	38
PsuI	RGATCY	3 cut(s)	368, 374, 946
PvuI	CGATCG	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	670, 941
SacI	GAGCTC	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	381
SatI	GCNGC	4 cut(s)	132, 176, 179, 242
Sau3AI	GATC	8 cut(s)	45, 167, 190, 204, 226, 368, 374, 946
Sau96I	GGNCC	3 cut(s)	38, 896, 932
ScrFI	CCNGG	4 cut(s)	261, 262, 685, 862
SduI	GDGCHC	5 cut(s)	253, 259, 275, 314, 447
SfaNI	GCATC	1 cut(s)	699
SinI	GGWCC	3 cut(s)	38, 896, 932
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	2 cut(s)	670, 941
Sse9I	AATT	4 cut(s)	124, 486, 702, 880
SspMI	CTAG	3 cut(s)	573, 632, 648
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	4 cut(s)	259, 260, 683, 860
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	6 cut(s)	44, 225, 382, 447, 604, 707
TasI	AATT	4 cut(s)	124, 486, 702, 880
TauI	GCSGC	3 cut(s)	134, 178, 181
TfiI	GAWTC	3 cut(s)	82, 319, 398
TseFI	GTSAC	3 cut(s)	811, 827, 926
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	3 cut(s)	811, 827, 926
TspDTI	ATGAA	2 cut(s)	316, 898
TspGWI	ACGGA	1 cut(s)	945
TspMI	CCCGGG	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	3 cut(s)	38, 896, 932
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmaI	CCCGGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	3 cut(s)	573, 632, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.