Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Reverse (-)

15434136 .. 15434977

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACACTAAAGTTGCTAGTGAACCGGTTGAGAATGGCTTTAAGCTAGATGGATCAAATGCAAAGAATTCAGAATATGTGCGAGATGATGAAGTTGATTCATTAGAGAAGGAGCATAGTGATGGGGTTGATGATAAGGAAAATGATGTCAAGCAACTGGTTTTTGACGAGAAATTGAGCATTTTCCAGTCAAGTTATTTAAGCAGAGTCACCGTTGTCTCATCCCAAATGCATGGTTTGGAAGATAACCTTGAAGCAGATGTCGGCAATATCAAGCCAATGATTAAAAGTGTGCCTATTAAAAGTGAAGCCAATATGTCTCGGTCCGTGATCATTATGTTTAACAACCAAAGTCCGGATAAAATAGGAGCCTCTGCAGATGTTGTGATACCTCGGATAACTAAAATCTATATGGTTGGTTTTCCCGAAGGACATGAATCTTATGGTAAATCCAGTGAGTCTTTACAAGTGAACCTTGAGGCTAGTGATGCCGAATTAAATCGCACTACCCACTTACTTGGTCCGGATGATAATGAAAAAGATGGAAACCGTGAGGGGAGTGGAGAGTCCGGAAACCACAGCAGAAGGGATTCACGAAGAAAATCTTGTGGCAAATCCTATACTAACTTACACAAAGATGGTGATGCTCGTAATTTTGAGAAGATTTCTGCTTGTGTACCCGAAGATAGTAATCTTTCTTGGAATGTCAATTTGGTTGCAGCATGTGTCAAGTTTGGTGGTACAAGCAAAGTGGCCGCCAAATGTTTGATAACATCTTATGCTCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

28.88

Weight (kDa)

5.27

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	3 cut(s)	355, 523, 569
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	2 cut(s)	678, 742
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	223, 324
AlwI	GGATC	1 cut(s)	61
Aor13HI	TCCGGA	3 cut(s)	355, 523, 569
AoxI	GGCC	1 cut(s)	753
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	1 cut(s)	67
AsiGI	ACCGGT	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	324, 521
AsuHPI	GGTGA	2 cut(s)	202, 653
AvaII	GGWCC	2 cut(s)	324, 521
BbvI	GCAGC	1 cut(s)	731
BccI	CCATC	4 cut(s)	44, 116, 536, 632
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	223, 324
BfaI	CTAG	3 cut(s)	18, 47, 483
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	2 cut(s)	720, 756
BlsI	GCNGC	2 cut(s)	721, 757
Bme18I	GGWCC	2 cut(s)	324, 521
BmgT120I	GGNCC	2 cut(s)	324, 521
BmiI	GGNNCC	1 cut(s)	370
BmsI	GCATC	2 cut(s)	478, 634
BpuEI	CTTGAG	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	4 cut(s)	25, 355, 523, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	3 cut(s)	162, 187, 453
Bse8I	GATNNNNATC	1 cut(s)	690
BseAI	TCCGGA	3 cut(s)	355, 523, 569
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	221, 532
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseNI	ACTGG	3 cut(s)	162, 187, 453
BseXI	GCAGC	1 cut(s)	731
BshFI	GGCC	1 cut(s)	755
BshTI	ACCGGT	1 cut(s)	25
BsiSI	CCGG	4 cut(s)	26, 356, 524, 570
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	223, 324
BsnI	GGCC	1 cut(s)	755
Bsp13I	TCCGGA	3 cut(s)	355, 523, 569
Bsp143I	GATC	2 cut(s)	53, 330
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	1 cut(s)	755
BspEI	TCCGGA	3 cut(s)	355, 523, 569
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	3 cut(s)	162, 187, 453
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	53, 330
Bst4CI	ACNGT	2 cut(s)	214, 551
BstF5I	GGATG	2 cut(s)	221, 532
BstKTI	GATC	2 cut(s)	56, 333
BstMAI	GTCTC	2 cut(s)	223, 324
BstMBI	GATC	2 cut(s)	53, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	726
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	731
BstXI	CCANNNNNNTGG	2 cut(s)	233, 518
BsuRI	GGCC	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	221, 532
BtsIMutI	CAGTG	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	324, 521
CpoI	CGGWCCG	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	677, 741
CspAI	ACCGGT	1 cut(s)	25
CspCI	CAANNNNNGTGG	4 cut(s)	718, 732, 753, 767
CspI	CGGWCCG	1 cut(s)	324
CviAII	CATG	3 cut(s)	233, 434, 723
CviJI	RGCY	7 cut(s)	39, 46, 277, 311, 371, 482, 755
CviKI_1	RGCY	7 cut(s)	39, 46, 277, 311, 371, 482, 755
CviQI	GTAC	2 cut(s)	677, 741
DpnI	GATC	2 cut(s)	55, 332
DpnII	GATC	2 cut(s)	53, 330
EaeI	YGGCCR	1 cut(s)	753
Eco47I	GGWCC	2 cut(s)	324, 521
EcoRI	GAATTC	1 cut(s)	67
EcoT22I	ATGCAT	1 cut(s)	234
FaeI	CATG	3 cut(s)	236, 437, 726
FalI	AAGNNNNNCTT	6 cut(s)	234, 266, 459, 491, 589, 621
FatI	CATG	3 cut(s)	232, 433, 722
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	720, 756
FokI	GGATG	2 cut(s)	208, 539
Fsp4HI	GCNGC	2 cut(s)	720, 756
FspBI	CTAG	3 cut(s)	18, 47, 483
GluI	GCNGC	2 cut(s)	720, 756
HaeIII	GGCC	1 cut(s)	755
HapII	CCGG	4 cut(s)	26, 356, 524, 570
Hin1II	CATG	3 cut(s)	236, 437, 726
HinfI	GANTC	6 cut(s)	98, 207, 437, 458, 566, 590
HpaII	CCGG	4 cut(s)	26, 356, 524, 570
HphI	GGTGA	2 cut(s)	202, 653
Hpy166II	GTNNAC	3 cut(s)	23, 472, 677
Hpy188I	TCNGA	2 cut(s)	73, 396
Hpy188III	TCNNGA	5 cut(s)	356, 425, 524, 570, 594
Hpy8I	GTNNAC	3 cut(s)	23, 472, 677
HpyAV	CCTTC	3 cut(s)	103, 422, 579
HpyCH4III	ACNGT	2 cut(s)	214, 551
HpyCH4V	TGCA	4 cut(s)	62, 232, 377, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	236, 437, 726
Kpn2I	TCCGGA	3 cut(s)	355, 523, 569
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	53, 330
LmnI	GCTCC	2 cut(s)	112, 368
LpnPI	CCDG	7 cut(s)	39, 143, 200, 369, 466, 537, 583
Lsp1109I	GCAGC	1 cut(s)	731
LweI	GCATC	2 cut(s)	478, 634
MaeI	CTAG	3 cut(s)	18, 47, 483
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	55, 332
MboI	GATC	2 cut(s)	53, 330
MboII	GAAGA	4 cut(s)	254, 609, 673, 695
MluCI	AATT	5 cut(s)	67, 173, 494, 652, 709
MlyI	GAGTC	3 cut(s)	216, 467, 575
MnlI	CCTC	4 cut(s)	382, 402, 472, 547
Mph1103I	ATGCAT	1 cut(s)	234
MroI	TCCGGA	3 cut(s)	355, 523, 569
MroXI	GAANNNNTTC	1 cut(s)	589
MseI	TTAA	6 cut(s)	42, 200, 285, 300, 342, 497
MslI	CAYNNNNRTG	2 cut(s)	120, 636
MspI	CCGG	4 cut(s)	26, 356, 524, 570
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	2 cut(s)	53, 330
NlaIII	CATG	3 cut(s)	236, 437, 726
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	3 cut(s)	98, 437, 590
PinAI	ACCGGT	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	721, 757
PleI	GAGTC	3 cut(s)	215, 466, 574
PpsI	GAGTC	3 cut(s)	215, 466, 574
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	324, 521
PstI	CTGCAG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	678, 742
RsaNI	GTAC	2 cut(s)	677, 741
RseI	CAYNNNNRTG	2 cut(s)	120, 636
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SaqAI	TTAA	6 cut(s)	42, 200, 285, 300, 342, 497
SatI	GCNGC	2 cut(s)	720, 756
Sau3AI	GATC	2 cut(s)	53, 330
Sau96I	GGNCC	2 cut(s)	324, 521
SchI	GAGTC	3 cut(s)	216, 467, 575
SetI	ASST	5 cut(s)	48, 252, 394, 477, 791
SfaNI	GCATC	2 cut(s)	478, 634
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	2 cut(s)	324, 521
SmiMI	CAYNNNNRTG	2 cut(s)	120, 636
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	67, 173, 494, 652, 709
SsiI	CCGC	1 cut(s)	756
SspMI	CTAG	3 cut(s)	18, 47, 483
TaaI	ACNGT	2 cut(s)	214, 551
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	5 cut(s)	67, 173, 494, 652, 709
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	3 cut(s)	98, 437, 590
Tru1I	TTAA	6 cut(s)	42, 200, 285, 300, 342, 497
Tru9I	TTAA	6 cut(s)	42, 200, 285, 300, 342, 497
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	5 cut(s)	17, 90, 105, 450, 549
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	324, 521
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	3 cut(s)	18, 47, 483
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.