Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Forward (+)

28263454 .. 28269555

Gene Structure 6102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGATTGCAGGCCTTTGGAAATAACGGTGTTCGACGCGATTGACATCAAGGGCGTGAACATGTTCTCCAAGATGGATGTCTACGCTGTCGTCTCCGTCTCCGGTAACGGAGTGAGGAAGCAGAAGCTCCTCACCCCCATCCATAAAGACGCTGGCACCAACCGCAAATGGAACCACACCCTCAAGTTCGCCCTCGACAACTCTGCCTCCAAATCAAAATCAAGCTCATCTGTGACTGCACCTTCGGCGAGACCAACGCATCACCTGCAGCCCATCTCCGCCTTCGTCTTCTCCAGGTCCTCTTCTCCAGTCGCTCACCTGCTGCCCATCTCCGACCGGTCTCAGTTTGAACGGTGTTCGGCGATTGATGGTGGGCTTGAGGTCGACGAAGATGGGGCTTGGGATGTGCTAGCCGGCGCCGGGCTCGAGGTCGACGAAGAAGGTGTTGAAGGCGTGGAGACTTACATCGGCACAAATGGAGAGTGTGGTGAACTTCCCTTCTTCTCACCACCACTACCACCGCATAACCCCAGTTCCCCAAAGCACACCGCCCTCCATTCCCATGAATACCAGAAGCTCAAAGCCTTACTGGAGATTCTCATGGAGAAGGAGTGTTCCCCTTTGCAATTGCTTAGAGGTGATGGTGATTGGACGAAAGACCAATTCTGGGCTGTCATCAGATTCCTCATACATGCTTCCAGGCCCAAGGAAATCTTGCAGTTGTTTGATATGTGGAGGAACATTGAGAAATCGCGGATTAATGAATTCAACTACAGCAAGATAATCGGATTGTTAGTTGAGGAGGAGCTGATTGAAGAGGCAGTGCTGTGCTTTCAGGATATGAAGACTCATGGTCTTAGGATGTATGTGGAATTATACAATTCAATTATTCATGGTCTTTCGAGAAAAGGAAACTTTGATGATGCCGAACTCTTCCTTAACGAGATGAAAGAAATGAATTTGGCATCAGACACTGATACTTATGATGGGCTCATTGAGGCTTATGGAAAATATAAAATGTATGATGAGATGGGTATGTGTCTGAAGAAAATGAGATTAAATGGCTGTTCACCAGACCAGATTACCTATAATTTGCTTATTCGAGAGTTTGCACGTGGAGGGTTACTGAAAAGGATGGAAAGAGTATATCAATCCATGGTTTCAAAAAGAATGGATTTGCAGGCTCCTACTTTGATTGCAATGCTGGAAGTTTATGCAAAATTTGGGATCGTGGAGAAGATGGAAGTGTTTTATAGAAGAGTTTTGAACTCGAGAGCAATTTTAAAGGAGGATTTGATTAAGAAAGTTGCAGAAGTTTATATTGAGAACTATATGTTTTCCAGATTAGAGAACTTGGGAGTTGATCTTTCTCCAAGATTTGGTCAGACTGATCTCGTTTGGTGTCTGCATCTCCTTTCTCATGCTGGTATTTTGAGTCGAAGAGGTATGGATTCCGTCATTCTAGAGATGGAAGAAAAAGGTGTCCCATGGAATGCAACGGTGGCAAACATAATAATGCTAGCTTATTTGAAGATGAAAGATTTCACCCGCCTGAGAATCATGTTCTCCCAATCACTAACCCATGGTGTGGAGCCCGATGTGATCACTGTTGGAATTCTATTTGATGCAAATAGGATTGGCTATGATGGGTCTGTGACTTTAGATGCATGGAGGAAGCAGGGTTTTCTTTACAAAGCAGTTGAAATGAACACCGATCCTCTCGTTATTACTACATTTGGGAAGGGGCATTTCCTCAGGAACTGTGAAGCAGCATACTCCTCTCTTGAACCTGAAGTTAGAGAAAAGAAAACATGGACTTACCAAGATCTCATTGACTCAGTGTTCAAAGACAATCAGTGTAACCTCAATGAAGGAGGTCGCCGCTTATCTAACCCAGAGACATTCACAGATAATCTCTTTACACACAAAATCCAGCTAATGAGAAATCTTTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

653

Amino Acids

74.28

Weight (kDa)

5.87

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	239 - 392	3.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	278 - 337	5.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	286 - 317	3.4e-06	PPR repeat
PPR_2	PF13041	292 - 336	1.1e-09	PPR repeat family
PPR	PF01535	293 - 320	2.2e-06	PPR repeat
PPR_2	PF13041	324 - 372	1.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	273, 327
Acc36I	ACCTGC	2 cut(s)	273, 327
AccB1I	GGYRCC	2 cut(s)	155, 416
AccB7I	CCANNNNNTGG	2 cut(s)	1379, 1588
AccI	GTMKAC	3 cut(s)	81, 384, 432
AccII	CGCG	2 cut(s)	38, 754
AciI	CCGC	7 cut(s)	163, 279, 521, 549, 754, 1549, 1882
AclWI	GGATC	2 cut(s)	1235, 1709
AcsI	RAATTY	4 cut(s)	764, 958, 1220, 1614
AcuI	CTGAAG	2 cut(s)	1064, 1812
AcvI	CACGTG	1 cut(s)	1115
AcyI	GRCGYC	1 cut(s)	417
AfiI	CCNNNNNNNGG	4 cut(s)	420, 667, 1379, 1588
AflIII	ACRYGT	1 cut(s)	60
AgeI	ACCGGT	1 cut(s)	336
AhdI	GACNNNNNGTC	1 cut(s)	852
AjnI	CCWGG	2 cut(s)	293, 698
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	6 cut(s)	127, 225, 577, 808, 1523, 1936
AluI	AGCT	6 cut(s)	127, 225, 577, 808, 1523, 1936
Alw26I	GTCTC	6 cut(s)	97, 103, 244, 345, 452, 1892
AlwI	GGATC	2 cut(s)	1235, 1709
AlwNI	CAGNNNCTG	2 cut(s)	974, 1761
Ama87I	CYCGRG	2 cut(s)	425, 1270
AoxI	GGCC	2 cut(s)	11, 701
ApeKI	GCWGC	3 cut(s)	268, 322, 1769
ApoI	RAATTY	4 cut(s)	764, 958, 1220, 1614
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AseI	ATTAAT	1 cut(s)	759
AsiGI	ACCGGT	1 cut(s)	336
Asp700I	GAANNNNTTC	2 cut(s)	62, 1541
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	297, 702
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	9 cut(s)	124, 254, 308, 498, 500, 650, 656, 1062, 1537
AsuNHI	GCTAGC	2 cut(s)	409, 1519
AvaI	CYCGRG	2 cut(s)	425, 1270
AvaII	GGWCC	1 cut(s)	297
AxyI	CCTNAGG	1 cut(s)	1754
BanI	GGYRCC	2 cut(s)	155, 416
BanII	GRGCYC	3 cut(s)	426, 993, 1596
BbrPI	CACGTG	1 cut(s)	1115
BbsI	GAAGAC	2 cut(s)	280, 851
BbvI	GCAGC	3 cut(s)	280, 309, 1781
BcgI	CGANNNNNNTGC	4 cut(s)	185, 219, 766, 800
BciT130I	CCWGG	2 cut(s)	295, 700
BclI	TGATCA	1 cut(s)	1602
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	6 cut(s)	97, 103, 244, 345, 452, 1892
BfaI	CTAG	3 cut(s)	410, 1463, 1520
BfmI	CTRYAG	2 cut(s)	266, 772
BfoI	RGCGCY	1 cut(s)	420
BfuAI	ACCTGC	2 cut(s)	273, 327
BglII	AGATCT	1 cut(s)	1825
BisI	GCNGC	4 cut(s)	269, 323, 1770, 1882
BlsI	GCNGC	4 cut(s)	270, 324, 1771, 1883
Bme1390I	CCNGG	3 cut(s)	295, 421, 700
Bme18I	GGWCC	1 cut(s)	297
BmeRI	GACNNNNNGTC	1 cut(s)	852
BmeT110I	CYCGRG	2 cut(s)	425, 1270
BmgT120I	GGNCC	2 cut(s)	297, 702
BmiI	GGNNCC	5 cut(s)	157, 173, 418, 1185, 1593
BmrFI	CCNGG	3 cut(s)	295, 421, 700
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	6 cut(s)	268, 913, 974, 1417, 1615, 1654
BmtI	GCTAGC	2 cut(s)	413, 1523
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	2 cut(s)	280, 851
BpmI	CTGGAG	3 cut(s)	277, 291, 611
BpuEI	CTTGAG	2 cut(s)	167, 398
BpuMI	CCSGG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	1115
BsaBI	GATNNNNATC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	244, 345
BsaJI	CCNNGG	4 cut(s)	705, 1155, 1487, 1582
BsaWI	WCCGGW	2 cut(s)	101, 336
BsaXI	ACNNNNNCTCC	6 cut(s)	50, 80, 191, 221, 596, 626
Bsc4I	CCNNNNNNNGG	4 cut(s)	420, 667, 1379, 1588
Bse118I	RCCGGY	2 cut(s)	336, 413
Bse1I	ACTGG	3 cut(s)	308, 531, 594
Bse21I	CCTNAGG	1 cut(s)	1754
Bse3DI	GCAATG	1 cut(s)	1206
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	295, 700
BseDI	CCNNGG	4 cut(s)	705, 1155, 1487, 1582
BseGI	GGATG	5 cut(s)	82, 138, 409, 867, 1140
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	4 cut(s)	420, 667, 1379, 1588
BseMI	GCAATG	1 cut(s)	1206
BseMII	CTCAG	4 cut(s)	356, 1544, 1768, 1851
BseNI	ACTGG	3 cut(s)	308, 531, 594
BseRI	GAGGAG	4 cut(s)	119, 815, 818, 1768
BseXI	GCAGC	3 cut(s)	280, 309, 1781
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	2 cut(s)	38, 754
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	2 cut(s)	13, 703
BshNI	GGYRCC	2 cut(s)	155, 416
BshTI	ACCGGT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	337
BsiHKCI	CYCGRG	2 cut(s)	425, 1270
BsiSI	CCGG	4 cut(s)	102, 337, 414, 420
BslFI	GGGAC	1 cut(s)	1469
BslI	CCNNNNNNNGG	4 cut(s)	420, 667, 1379, 1588
BsmAI	GTCTC	6 cut(s)	97, 103, 244, 345, 452, 1892
BsmBI	CGTCTC	2 cut(s)	97, 103
BsmFI	GGGAC	1 cut(s)	1469
BsmI	GAATGC	1 cut(s)	1498
BsnI	GGCC	2 cut(s)	13, 703
Bso31I	GGTCTC	2 cut(s)	244, 345
BsoBI	CYCGRG	2 cut(s)	425, 1270
Bsp1286I	GDGCHC	3 cut(s)	426, 993, 1596
Bsp143I	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
Bsp19I	CCATGG	3 cut(s)	1155, 1487, 1582
BspACI	CCGC	7 cut(s)	163, 279, 521, 549, 754, 1549, 1882
BspANI	GGCC	2 cut(s)	13, 703
BspCNI	CTCAG	4 cut(s)	355, 1545, 1767, 1850
BspFNI	CGCG	2 cut(s)	38, 754
BspLI	GGNNCC	5 cut(s)	157, 173, 418, 1185, 1593
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	2 cut(s)	273, 327
BspOI	GCTAGC	2 cut(s)	413, 1523
BspPI	GGATC	2 cut(s)	1235, 1709
BspT107I	GGYRCC	2 cut(s)	155, 416
BspTNI	GGTCTC	2 cut(s)	244, 345
BsrDI	GCAATG	1 cut(s)	1206
BsrFI	RCCGGY	2 cut(s)	336, 413
BsrI	ACTGG	3 cut(s)	308, 531, 594
BssAI	RCCGGY	2 cut(s)	336, 413
BssECI	CCNNGG	4 cut(s)	705, 1155, 1487, 1582
BssMI	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	4 cut(s)	705, 1155, 1487, 1582
Bst2UI	CCWGG	2 cut(s)	295, 700
Bst4CI	ACNGT	5 cut(s)	28, 354, 1501, 1609, 1763
Bst6I	CTCTTC	5 cut(s)	307, 810, 938, 1252, 1435
BstACI	GRCGYC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	1115
BstC8I	GCNNGC	6 cut(s)	11, 154, 411, 415, 1182, 1521
BstDEI	CTNAG	6 cut(s)	342, 632, 857, 1553, 1754, 1837
BstDSI	CCRYGG	3 cut(s)	1155, 1487, 1582
BstF5I	GGATG	5 cut(s)	82, 138, 409, 867, 1140
BstFNI	CGCG	2 cut(s)	38, 754
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	6 cut(s)	1230, 1366, 1393, 1605, 1717, 1828
BstMAI	GTCTC	6 cut(s)	97, 103, 244, 345, 452, 1892
BstMBI	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 245, 265, 1502
BstNI	CCWGG	2 cut(s)	295, 700
BstNSI	RCATGY	2 cut(s)	64, 695
BstSCI	CCNGG	3 cut(s)	293, 419, 698
BstSFI	CTRYAG	2 cut(s)	266, 772
BstUI	CGCG	2 cut(s)	38, 754
BstV1I	GCAGC	3 cut(s)	280, 309, 1781
BstV2I	GAAGAC	2 cut(s)	280, 851
BstX2I	RGATCY	1 cut(s)	1825
BstYI	RGATCY	1 cut(s)	1825
Bsu36I	CCTNAGG	1 cut(s)	1754
BsuRI	GGCC	2 cut(s)	13, 703
BtgI	CCRYGG	3 cut(s)	1155, 1487, 1582
BtsCI	GGATG	5 cut(s)	82, 138, 409, 867, 1140
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	5 cut(s)	828, 972, 1605, 1845, 1862
BveI	ACCTGC	2 cut(s)	273, 327
Cac8I	GCNNGC	6 cut(s)	11, 154, 411, 415, 1182, 1521
CaiI	CAGNNNCTG	2 cut(s)	974, 1761
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	2 cut(s)	336, 413
Cfr13I	GGNCC	2 cut(s)	297, 702
CseI	GACGC	2 cut(s)	44, 158
CspAI	ACCGGT	1 cut(s)	336
DdeI	CTNAG	6 cut(s)	342, 632, 857, 1553, 1754, 1837
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	6 cut(s)	1229, 1365, 1392, 1604, 1716, 1827
DpnII	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
DraI	TTTAAA	1 cut(s)	1284
DriI	GACNNNNNGTC	1 cut(s)	852
Eam1104I	CTCTTC	5 cut(s)	307, 810, 938, 1252, 1435
Eam1105I	GACNNNNNGTC	1 cut(s)	852
EarI	CTCTTC	5 cut(s)	307, 810, 938, 1252, 1435
EciI	GGCGGA	1 cut(s)	268
Eco130I	CCWWGG	4 cut(s)	705, 1155, 1487, 1582
Eco147I	AGGCCT	1 cut(s)	13
Eco24I	GRGCYC	3 cut(s)	426, 993, 1596
Eco31I	GGTCTC	2 cut(s)	244, 345
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	1064, 1812
Eco72I	CACGTG	1 cut(s)	1115
Eco81I	CCTNAGG	1 cut(s)	1754
Eco88I	CYCGRG	2 cut(s)	425, 1270
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRI	GAATTC	2 cut(s)	764, 1614
EcoRII	CCWGG	2 cut(s)	293, 698
EcoT14I	CCWWGG	4 cut(s)	705, 1155, 1487, 1582
EcoT22I	ATGCAT	1 cut(s)	1669
EcoT38I	GRGCYC	3 cut(s)	426, 993, 1596
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	4 cut(s)	705, 1155, 1487, 1582
Esp3I	CGTCTC	2 cut(s)	97, 103
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FaqI	GGGAC	1 cut(s)	1469
FauI	CCCGC	1 cut(s)	1556
FbaI	TGATCA	1 cut(s)	1602
FblI	GTMKAC	3 cut(s)	81, 384, 432
Fnu4HI	GCNGC	4 cut(s)	269, 323, 1770, 1882
FokI	GGATG	5 cut(s)	89, 125, 416, 874, 1147
FriOI	GRGCYC	3 cut(s)	426, 993, 1596
Fsp4HI	GCNGC	4 cut(s)	269, 323, 1770, 1882
FspBI	CTAG	3 cut(s)	410, 1463, 1520
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	4 cut(s)	269, 323, 1770, 1882
GsuI	CTGGAG	3 cut(s)	277, 291, 611
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	13, 703
HapII	CCGG	4 cut(s)	102, 337, 414, 420
HgaI	GACGC	2 cut(s)	44, 158
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	417
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	2 cut(s)	385, 433
HindII	GTYRAC	2 cut(s)	385, 433
HinfI	GANTC	7 cut(s)	595, 681, 847, 1435, 1451, 1557, 1835
HpaII	CCGG	4 cut(s)	102, 337, 414, 420
HphI	GGTGA	9 cut(s)	124, 254, 308, 498, 500, 650, 656, 1062, 1537
Hpy166II	GTNNAC	6 cut(s)	58, 82, 385, 433, 491, 1070
Hpy188I	TCNGA	6 cut(s)	334, 680, 788, 970, 1044, 1386
Hpy188III	TCNNGA	8 cut(s)	836, 903, 1103, 1272, 1341, 1463, 1756, 1784
Hpy8I	GTNNAC	6 cut(s)	58, 82, 385, 433, 491, 1070
Hpy99I	CGWCG	3 cut(s)	38, 389, 437
HpyAV	CCTTC	8 cut(s)	252, 292, 434, 443, 508, 601, 1735, 1865
HpyCH4III	ACNGT	5 cut(s)	28, 354, 1501, 1609, 1763
HpyCH4IV	ACGT	1 cut(s)	1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 245, 265, 1502
HpyF3I	CTNAG	6 cut(s)	342, 632, 857, 1553, 1754, 1837
HpySE526I	ACGT	1 cut(s)	1114
Hsp92I	GRCGYC	1 cut(s)	417
HspAI	GCGC	1 cut(s)	417
KasI	GGCGCC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	1602
Kzo9I	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
LmnI	GCTCC	4 cut(s)	132, 805, 1189, 1591
Lsp1109I	GCAGC	3 cut(s)	280, 309, 1781
LweI	GCATC	6 cut(s)	268, 913, 974, 1417, 1615, 1654
MaeI	CTAG	3 cut(s)	410, 1463, 1520
MaeII	ACGT	1 cut(s)	1114
MaeIII	GTNAC	5 cut(s)	104, 232, 1122, 1654, 1859
MalI	GATC	6 cut(s)	1229, 1365, 1392, 1604, 1716, 1827
MboI	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
MfeI	CAATTG	1 cut(s)	626
MflI	RGATCY	1 cut(s)	1825
MhlI	GDGCHC	3 cut(s)	426, 993, 1596
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	3 cut(s)	841, 1444, 1829
MmeI	TCCRAC	2 cut(s)	357, 1591
Mph1103I	ATGCAT	1 cut(s)	1669
MroNI	GCCGGC	1 cut(s)	413
MroXI	GAANNNNTTC	2 cut(s)	62, 1541
MseI	TTAA	5 cut(s)	759, 939, 1058, 1283, 1299
MslI	CAYNNNNRTG	2 cut(s)	561, 1514
MspI	CCGG	4 cut(s)	102, 337, 414, 420
MspR9I	CCNGG	3 cut(s)	295, 421, 700
MunI	CAATTG	1 cut(s)	626
Mva1269I	GAATGC	1 cut(s)	1498
MvaI	CCWGG	2 cut(s)	295, 700
MvnI	CGCG	2 cut(s)	38, 754
MwoI	GCNNNNNNNGC	4 cut(s)	162, 245, 265, 1502
NaeI	GCCGGC	1 cut(s)	415
NarI	GGCGCC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	421
NcoI	CCATGG	3 cut(s)	1155, 1487, 1582
NdeII	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
NgoMIV	GCCGGC	1 cut(s)	413
NheI	GCTAGC	2 cut(s)	409, 1519
NlaIV	GGNNCC	5 cut(s)	157, 173, 418, 1185, 1593
NmuCI	GTSAC	2 cut(s)	232, 1654
NsiI	ATGCAT	1 cut(s)	1669
NspI	RCATGY	2 cut(s)	64, 695
PaeR7I	CTCGAG	2 cut(s)	425, 1270
PaqCI	CACCTGC	2 cut(s)	273, 327
PceI	AGGCCT	1 cut(s)	13
PciI	ACATGT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	1 cut(s)	1498
PdiI	GCCGGC	1 cut(s)	415
PdmI	GAANNNNTTC	2 cut(s)	62, 1541
PfeI	GAWTC	4 cut(s)	595, 681, 1451, 1557
PflMI	CCANNNNNTGG	2 cut(s)	1379, 1588
PinAI	ACCGGT	1 cut(s)	336
PkrI	GCNGC	4 cut(s)	270, 324, 1771, 1883
PleI	GAGTC	3 cut(s)	841, 1443, 1829
PluTI	GGCGCC	1 cut(s)	420
PmaCI	CACGTG	1 cut(s)	1115
PmlI	CACGTG	1 cut(s)	1115
PpsI	GAGTC	3 cut(s)	841, 1443, 1829
Ppu21I	YACGTR	1 cut(s)	1115
PpuMI	RGGWCCY	1 cut(s)	297
PscI	ACATGT	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	759
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	293, 698
PspCI	CACGTG	1 cut(s)	1115
PspGI	CCWGG	2 cut(s)	293, 698
PspN4I	GGNNCC	5 cut(s)	157, 173, 418, 1185, 1593
PspPI	GGNCC	2 cut(s)	297, 702
PspPPI	RGGWCCY	1 cut(s)	297
PspXI	VCTCGAGB	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	2 cut(s)	974, 1761
PsuI	RGATCY	1 cut(s)	1825
RseI	CAYNNNNRTG	2 cut(s)	561, 1514
SalI	GTCGAC	2 cut(s)	383, 431
SaqAI	TTAA	5 cut(s)	759, 939, 1058, 1283, 1299
SatI	GCNGC	4 cut(s)	269, 323, 1770, 1882
Sau3AI	GATC	6 cut(s)	1227, 1363, 1390, 1602, 1714, 1825
Sau96I	GGNCC	2 cut(s)	297, 702
SchI	GAGTC	3 cut(s)	841, 1444, 1829
ScrFI	CCNGG	3 cut(s)	295, 421, 700
SduI	GDGCHC	3 cut(s)	426, 993, 1596
SfaNI	GCATC	6 cut(s)	268, 913, 974, 1417, 1615, 1654
SfcI	CTRYAG	2 cut(s)	266, 772
SfoI	GGCGCC	1 cut(s)	418
Sfr274I	CTCGAG	2 cut(s)	425, 1270
SinI	GGWCC	1 cut(s)	297
SlaI	CTCGAG	2 cut(s)	425, 1270
SmiMI	CAYNNNNRTG	2 cut(s)	561, 1514
SmlI	CTYRAG	4 cut(s)	182, 377, 425, 1270
SmoI	CTYRAG	4 cut(s)	182, 377, 425, 1270
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	7 cut(s)	163, 279, 521, 549, 754, 1549, 1882
SspDI	GGCGCC	1 cut(s)	416
SspMI	CTAG	3 cut(s)	410, 1463, 1520
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	293, 419, 698
StyI	CCWWGG	4 cut(s)	705, 1155, 1487, 1582
TaaI	ACNGT	5 cut(s)	28, 354, 1501, 1609, 1763
TaiI	ACGT	1 cut(s)	1117
TaqI	TCGA	9 cut(s)	33, 195, 384, 426, 432, 902, 1102, 1271, 1438
TauI	GCSGC	1 cut(s)	1884
TfiI	GAWTC	4 cut(s)	595, 681, 1451, 1557
Tru1I	TTAA	5 cut(s)	759, 939, 1058, 1283, 1299
Tru9I	TTAA	5 cut(s)	759, 939, 1058, 1283, 1299
TscAI	CASTG	5 cut(s)	828, 979, 1612, 1845, 1862
TseFI	GTSAC	2 cut(s)	232, 1654
TseI	GCWGC	3 cut(s)	268, 322, 1769
Tsp45I	GTSAC	2 cut(s)	232, 1654
TspDTI	ATGAA	9 cut(s)	579, 777, 857, 881, 962, 971, 1550, 1721, 1884
TspGWI	ACGGA	3 cut(s)	85, 123, 1444
TspRI	CASTG	5 cut(s)	828, 979, 1612, 1845, 1862
Van91I	CCANNNNNTGG	2 cut(s)	1379, 1588
VpaK11BI	GGWCC	1 cut(s)	297
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	4 cut(s)	764, 958, 1220, 1614
XbaI	TCTAGA	1 cut(s)	1462
XceI	RCATGY	2 cut(s)	64, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XhoI	CTCGAG	2 cut(s)	425, 1270
XmiI	GTMKAC	3 cut(s)	81, 384, 432
XmnI	GAANNNNTTC	2 cut(s)	62, 1541
XspI	CTAG	3 cut(s)	410, 1463, 1520
Zsp2I	ATGCAT	1 cut(s)	1669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.