Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Reverse (-)

16525456 .. 16528612

Gene Structure 3157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGAGAGTGTGGTGAAGCTGCAGTACAGCCATTGCAAGATAGCCCACACTTCATGGAGCTTCAAACACAGCAACACCCACCTCCGCTTCCCCAAAACCCAAACCCCAAAACCCTCCACCACAACCACTCTTTCCCTTTGCCATGCCCACTTCTTCTCACCATCACCACTACCACCACACAAGACTAGTTCTTCCACAGAGCACACCACCCTCCATGTTGAGCCTTCCCATGAATATCACAAGCTCAGGGCCTTACTGGACATTCTCATGGAGAAAGACTGTTGCCCTTTGCAGTTGCTTAGAGATGATGGTGACTGGACCATAGACCAATTCTGGGCTGTCATCCGATTCCTCATACATGCTTCCAGGCCCAAGGAAATCTTGCAGTTATTTGATATATGGAGGAACATTGAGAAATCACGGATTAATGAGTTCAACTACAGCAAGATAATAGGATTGCTAGTTGAGGAGGACCTCATTGAAGAGGCAGTAGTATGCTTTCAGGATATGAAGAGTCAGGGTCTTGGGCTGTCTGTGGAATTATACAATACGATTATTCATGGTCTTTCGAGAAATGGAAACTTTGTTGATGCCGTGCACTTTCTTAATGAGATGAAAGAAATGAATTTGGCACCGGACGCTGATACTTATGATGGGCTCATTGAAGCATATGGAAAATATAAAATGTATGATGAAATGGGTATGTGTCTGAAAAAAATGAGATTAAATGGCTGTTCACCGGACTACATTACCTATAATTTGCTTATTCGAGAGTTTGCACATGGAGGGTTACTGAATAGGGTGGAAAGAGTGTATCAATCCATGGTTTCAAGAAGAATGGATTTGCAGGTTCCTACTTTGATTGCGATACTGGAAGTTTACGCAAAATTTGGGATCTTGGAGAAGATGGAAGTTTTCTATAGAAGGGTTTTGAACTCGAGAGCAATTTTAAAGGAGGATTTGATTAAGAAAGTTGCAGAAGTTTATATTGAGAACTATATGTTTTCCAAATTAGAGAACTTGGGAGTTGATCTTTCACCAAGGTTTGGTCAGACTGATCTCGTTTGGTGTTTGCGTCTCCTATCTCATGCTGGTCTTTTGAGTCGAAGAGGTATGAATTCCATCATTCTAGAGATGGAAGGAAAAAGTGTCCCATGGAATGCAACGGTGGCAAACATAATGATGCTAGCTTATTTGAAGATGAAAGATTTCACCCGCCTGAGAAGTTTGTTCTCCCAATCACTAACCCGTGGTGTGGATCCTGATATTATCACTTTTGGAATTCTATTTGATGCAAATAGGATTGGCTATGATGGCTCTGCGACTTTGAATACATGGAGGAAGCACGGAATTCTTTACAAAGCAGTTGAAATGAACACTGATCCTCTTGTTATTACTACATTTGGGAAGGGGCATTTCCTCAGGAACTGTGAAGCAGCATACTCCTCGCTTGAACCTGAAGTTAGAGAAAAGAAAACATGGACGTATCAAGATCTTATTGATTCAGTGTTCAAAGACAATCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

510

Amino Acids

58.82

Weight (kDa)

7.01

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	161 - 303	5.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	167 - 226	5.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	178 - 206	4.8e-06	PPR repeat
PPR_2	PF13041	179 - 225	4e-12	PPR repeat family
PPR	PF01535	182 - 209	3.7e-06	PPR repeat
PPR_2	PF13041	216 - 261	5.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
AccB1I	GGYRCC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	1046
AciI	CCGC	2 cut(s)	85, 1216
AclWI	GGATC	4 cut(s)	902, 1253, 1266, 1376
AcsI	RAATTY	5 cut(s)	625, 887, 1117, 1281, 1350
AcuI	CTGAAG	1 cut(s)	1479
AfaI	GTAC	2 cut(s)	26, 1526
AfiI	CCNNNNNNNGG	3 cut(s)	334, 1046, 1255
AhlI	ACTAGT	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	4 cut(s)	19, 60, 244, 1190
AluI	AGCT	4 cut(s)	19, 60, 244, 1190
Alw21I	GWGCWC	2 cut(s)	204, 600
Alw26I	GTCTC	1 cut(s)	1082
Alw44I	GTGCAC	1 cut(s)	596
AlwI	GGATC	4 cut(s)	902, 1253, 1266, 1376
AlwNI	CAGNNNCTG	1 cut(s)	1428
Ama87I	CYCGRG	1 cut(s)	937
AoxI	GGCC	2 cut(s)	249, 368
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	19, 1436
ApoI	RAATTY	5 cut(s)	625, 887, 1117, 1281, 1350
AseI	ATTAAT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	1208
AspS9I	GGNCC	4 cut(s)	249, 318, 369, 472
AsuHPI	GGTGA	7 cut(s)	25, 150, 156, 323, 729, 1029, 1204
AsuNHI	GCTAGC	1 cut(s)	1186
AvaI	CYCGRG	1 cut(s)	937
AvaII	GGWCC	2 cut(s)	318, 472
AxyI	CCTNAGG	1 cut(s)	1421
BaeGI	GKGCMC	1 cut(s)	600
BamHI	GGATCC	1 cut(s)	1258
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	660
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
Bbv12I	GWGCWC	2 cut(s)	204, 600
BbvI	GCAGC	2 cut(s)	6, 1448
BccI	CCATC	7 cut(s)	169, 302, 647, 901, 1129, 1130, 1307
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	1428, 1462
BciT130I	CCWGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	1082
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	4 cut(s)	186, 461, 1130, 1187
BfmI	CTRYAG	3 cut(s)	20, 439, 919
BfuAI	ACCTGC	1 cut(s)	838
BglII	AGATCT	1 cut(s)	1492
BisI	GCNGC	2 cut(s)	20, 1437
BlsI	GCNGC	2 cut(s)	21, 1438
BmcAI	AGTACT	1 cut(s)	1526
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	2 cut(s)	318, 472
BmeT110I	CYCGRG	1 cut(s)	937
BmgT120I	GGNCC	4 cut(s)	249, 318, 369, 472
BmiI	GGNNCC	3 cut(s)	633, 852, 1260
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	3 cut(s)	580, 1173, 1282
BmtI	GCTAGC	1 cut(s)	1190
Bpu10I	CCTNAGC	1 cut(s)	245
BsaJI	CCNNGG	5 cut(s)	372, 822, 1040, 1154, 1249
BsaWI	WCCGGW	2 cut(s)	634, 739
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 1046, 1255
Bse1I	ACTGG	3 cut(s)	261, 320, 876
Bse21I	CCTNAGG	1 cut(s)	1421
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	5 cut(s)	372, 822, 1040, 1154, 1249
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	334, 1046, 1255
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	3 cut(s)	259, 1211, 1435
BseNI	ACTGG	3 cut(s)	261, 320, 876
BseRI	GAGGAG	2 cut(s)	482, 1435
BseSI	GKGCMC	1 cut(s)	600
BseXI	GCAGC	2 cut(s)	6, 1448
BshFI	GGCC	2 cut(s)	251, 370
BshNI	GGYRCC	1 cut(s)	631
BsiHKAI	GWGCWC	2 cut(s)	204, 600
BsiHKCI	CYCGRG	1 cut(s)	937
BsiSI	CCGG	2 cut(s)	635, 740
BslFI	GGGAC	1 cut(s)	1136
BslI	CCNNNNNNNGG	3 cut(s)	334, 1046, 1255
BsmAI	GTCTC	1 cut(s)	1082
BsmBI	CGTCTC	1 cut(s)	1082
BsmFI	GGGAC	1 cut(s)	1136
BsmI	GAATGC	1 cut(s)	1165
BsnI	GGCC	2 cut(s)	251, 370
BsoBI	CYCGRG	1 cut(s)	937
Bsp1286I	GDGCHC	3 cut(s)	204, 600, 660
Bsp143I	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
Bsp19I	CCATGG	2 cut(s)	822, 1154
BspACI	CCGC	2 cut(s)	85, 1216
BspANI	GGCC	2 cut(s)	251, 370
BspCNI	CTCAG	3 cut(s)	258, 1212, 1434
BspLI	GGNNCC	3 cut(s)	633, 852, 1260
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	838
BspOI	GCTAGC	1 cut(s)	1190
BspPI	GGATC	4 cut(s)	902, 1253, 1266, 1376
BspT107I	GGYRCC	1 cut(s)	631
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	3 cut(s)	261, 320, 876
BssECI	CCNNGG	5 cut(s)	372, 822, 1040, 1154, 1249
BssMI	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
BssT1I	CCWWGG	4 cut(s)	372, 822, 1040, 1154
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	3 cut(s)	281, 1168, 1430
Bst6I	CTCTTC	3 cut(s)	477, 506, 1102
BstC8I	GCNNGC	1 cut(s)	1188
BstDEI	CTNAG	4 cut(s)	245, 299, 1220, 1421
BstDSI	CCRYGG	3 cut(s)	822, 1154, 1249
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	6 cut(s)	897, 1033, 1060, 1261, 1384, 1495
BstMAI	GTCTC	1 cut(s)	1082
BstMBI	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
BstMWI	GCNNNNNNNGC	3 cut(s)	638, 1169, 1314
BstNI	CCWGG	1 cut(s)	367
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	3 cut(s)	20, 439, 919
BstSLI	GKGCMC	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	6, 1448
BstX2I	RGATCY	3 cut(s)	894, 1258, 1492
BstYI	RGATCY	3 cut(s)	894, 1258, 1492
Bsu36I	CCTNAGG	1 cut(s)	1421
BsuRI	GGCC	2 cut(s)	251, 370
BtgI	CCRYGG	3 cut(s)	822, 1154, 1249
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	1377, 1512
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	1188
CaiI	CAGNNNCTG	1 cut(s)	1428
Cfr13I	GGNCC	4 cut(s)	249, 318, 369, 472
CseI	GACGC	2 cut(s)	647, 1064
Csp6I	GTAC	2 cut(s)	25, 1525
CviQI	GTAC	2 cut(s)	25, 1525
DdeI	CTNAG	4 cut(s)	245, 299, 1220, 1421
DpnI	GATC	6 cut(s)	896, 1032, 1059, 1260, 1383, 1494
DpnII	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
DraI	TTTAAA	1 cut(s)	951
Eam1104I	CTCTTC	3 cut(s)	477, 506, 1102
EarI	CTCTTC	3 cut(s)	477, 506, 1102
Eco130I	CCWWGG	4 cut(s)	372, 822, 1040, 1154
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	318, 472
Eco57I	CTGAAG	1 cut(s)	1479
Eco81I	CCTNAGG	1 cut(s)	1421
Eco88I	CYCGRG	1 cut(s)	937
EcoO109I	RGGNCCY	2 cut(s)	249, 472
EcoRI	GAATTC	3 cut(s)	1117, 1281, 1350
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	4 cut(s)	372, 822, 1040, 1154
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	4 cut(s)	372, 822, 1040, 1154
Esp3I	CGTCTC	1 cut(s)	1082
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	1136
FauI	CCCGC	1 cut(s)	1223
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	2 cut(s)	20, 1437
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	2 cut(s)	20, 1437
FspBI	CTAG	4 cut(s)	186, 461, 1130, 1187
GluI	GCNGC	2 cut(s)	20, 1437
HaeIII	GGCC	2 cut(s)	251, 370
HapII	CCGG	2 cut(s)	635, 740
HgaI	GACGC	2 cut(s)	647, 1064
HinfI	GANTC	4 cut(s)	348, 514, 1102, 1502
HpaII	CCGG	2 cut(s)	635, 740
HphI	GGTGA	7 cut(s)	25, 150, 156, 323, 729, 1029, 1204
Hpy166II	GTNNAC	3 cut(s)	598, 737, 880
Hpy188I	TCNGA	3 cut(s)	347, 711, 1053
Hpy188III	TCNNGA	9 cut(s)	503, 570, 770, 831, 939, 1130, 1262, 1423, 1490
Hpy8I	GTNNAC	3 cut(s)	598, 737, 880
HpyAV	CCTTC	4 cut(s)	234, 918, 1133, 1402
HpyCH4III	ACNGT	3 cut(s)	281, 1168, 1430
HpyCH4IV	ACGT	1 cut(s)	1484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	638, 1169, 1314
HpyF3I	CTNAG	4 cut(s)	245, 299, 1220, 1421
HpySE526I	ACGT	1 cut(s)	1484
Kzo9I	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
LmnI	GCTCC	1 cut(s)	57
Lsp1109I	GCAGC	2 cut(s)	6, 1448
LweI	GCATC	3 cut(s)	580, 1173, 1282
MaeI	CTAG	4 cut(s)	186, 461, 1130, 1187
MaeII	ACGT	1 cut(s)	1484
MaeIII	GTNAC	2 cut(s)	311, 789
MalI	GATC	6 cut(s)	896, 1032, 1059, 1260, 1383, 1494
MboI	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
MboII	GAAGA	8 cut(s)	145, 183, 494, 523, 846, 916, 1119, 1210
MflI	RGATCY	3 cut(s)	894, 1258, 1492
MhlI	GDGCHC	3 cut(s)	204, 600, 660
MlyI	GAGTC	2 cut(s)	523, 1111
MroXI	GAANNNNTTC	1 cut(s)	1208
MseI	TTAA	5 cut(s)	426, 606, 725, 950, 966
MslI	CAYNNNNRTG	2 cut(s)	266, 1181
MspI	CCGG	2 cut(s)	635, 740
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	1165
MvaI	CCWGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	3 cut(s)	638, 1169, 1314
NcoI	CCATGG	2 cut(s)	822, 1154
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
NheI	GCTAGC	1 cut(s)	1186
NlaIV	GGNNCC	3 cut(s)	633, 852, 1260
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	937
PctI	GAATGC	1 cut(s)	1165
PdmI	GAANNNNTTC	1 cut(s)	1208
PfeI	GAWTC	2 cut(s)	348, 1502
PflMI	CCANNNNNTGG	1 cut(s)	1046
PkrI	GCNGC	2 cut(s)	21, 1438
PleI	GAGTC	2 cut(s)	522, 1110
PpsI	GAGTC	2 cut(s)	522, 1110
PpuMI	RGGWCCY	1 cut(s)	472
PshBI	ATTAAT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	633, 852, 1260
PspPI	GGNCC	4 cut(s)	249, 318, 369, 472
PspPPI	RGGWCCY	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	1428
PsuI	RGATCY	3 cut(s)	894, 1258, 1492
RsaI	GTAC	2 cut(s)	26, 1526
RsaNI	GTAC	2 cut(s)	25, 1525
RseI	CAYNNNNRTG	2 cut(s)	266, 1181
SaqAI	TTAA	5 cut(s)	426, 606, 725, 950, 966
SatI	GCNGC	2 cut(s)	20, 1437
Sau3AI	GATC	6 cut(s)	894, 1030, 1057, 1258, 1381, 1492
Sau96I	GGNCC	4 cut(s)	249, 318, 369, 472
ScaI	AGTACT	1 cut(s)	1526
SchI	GAGTC	2 cut(s)	523, 1111
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	3 cut(s)	204, 600, 660
SfaNI	GCATC	3 cut(s)	580, 1173, 1282
SfcI	CTRYAG	3 cut(s)	20, 439, 919
Sfr274I	CTCGAG	1 cut(s)	937
SinI	GGWCC	2 cut(s)	318, 472
SlaI	CTCGAG	1 cut(s)	937
SmiMI	CAYNNNNRTG	2 cut(s)	266, 1181
SmlI	CTYRAG	1 cut(s)	937
SmoI	CTYRAG	1 cut(s)	937
SpeI	ACTAGT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	85, 1216
SspMI	CTAG	4 cut(s)	186, 461, 1130, 1187
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	4 cut(s)	372, 822, 1040, 1154
TaaI	ACNGT	3 cut(s)	281, 1168, 1430
TaiI	ACGT	1 cut(s)	1487
TaqI	TCGA	4 cut(s)	569, 769, 938, 1105
TatI	WGTACW	2 cut(s)	24, 1524
TfiI	GAWTC	2 cut(s)	348, 1502
Tru1I	TTAA	5 cut(s)	426, 606, 725, 950, 966
Tru9I	TTAA	5 cut(s)	426, 606, 725, 950, 966
TscAI	CASTG	2 cut(s)	1384, 1512
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	2 cut(s)	19, 1436
Tsp45I	GTSAC	1 cut(s)	311
TspGWI	ACGGA	2 cut(s)	436, 1362
TspRI	CASTG	2 cut(s)	1384, 1512
Van91I	CCANNNNNTGG	1 cut(s)	1046
VneI	GTGCAC	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	318, 472
VspI	ATTAAT	1 cut(s)	426
XapI	RAATTY	5 cut(s)	625, 887, 1117, 1281, 1350
XbaI	TCTAGA	1 cut(s)	1129
XceI	RCATGY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	937
XmnI	GAANNNNTTC	1 cut(s)	1208
XspI	CTAG	4 cut(s)	186, 461, 1130, 1187
ZrmI	AGTACT	1 cut(s)	1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.