Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Reverse (-)

16114965 .. 16121381

Gene Structure 6417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0103200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAGCCTCCATGCTTTTCGTCTTCTCCATATTCTCAGTCCTATTATTCAACGGAATCACGGCAGAGCCACCGCTTCTGAACGACGGCTCTCCGGAGGTTGCAGATTCGCCGATAAGACTCCAACTCCAACTTCGGTTGCTGGAGACCAAGGTTTACCTTCTAGAATCAAGCATTGATGAGAAAAACCGTGAACTGAGGAAAAAGGATGAAAAAATTAGGCAGATGGAGGAGATTATTCAAGGGAAATCAAACAGCAATGCATTTTTCCAAAGTGAGACAGAGGCTGTCCAGATCCATGGAGGATGGCTTTCAGTTCTACATTCAGTTGCAGTTCATATAAGCCATTTTCAGTCATACATAGTGACTTACTGGAATGAGTGCGGGAGACCAGCCTTGGATGTGGCAATTGAAAAGGCATTAGAAATGAAAGCTCAGGTTAATAGTTCGGCTCGGCTCAGCATTGAAACAATCAAATCCACATGGATACCAGGTTTGAAGAAACAATCTTTAGAAATTGTAGCCTATCTTGAACCAAATATTCAATTAGTCACTGCAAAAACTGTTGATATCTACCATGCGTCAAAGAGTTCTGTAGCACCATTTGTTTTCAAGGCACAAGAAATGGCAAATCCTCACATTCAGGTAGCTAAGAAGTTTACGGAGCCATACATAGCTCAGCTTATGATGGTGATAGATGAGGCTACAATGGTGACAAGAACCCATTTAGCTAACATACACGTTGCCTTGAAGCCATATACAAAGCAAGTACTCCACGCATGCAGAAAATTCATCAAATCTGCAACTTTTTACCATCATGAGGTCCAAGAAATGCTCAAAAACAATACGTTGACGCAATCACTTGCAACTATCGAACTGGCATGGCTTCTGGCCACTGCTTTACTGGCCCTGCCTGCAGTTCTTATGTTTAAGTTGACTTCCGTTATTTTCAGAAAAAAAGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

322

Amino Acids

36.32

Weight (kDa)

9.0

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	2 cut(s)	74, 384
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	788
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	1 cut(s)	820
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	9 cut(s)	52, 242, 413, 467, 499, 533, 545, 613, 751
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	5 cut(s)	434, 650, 677, 682, 731
AluI	AGCT	5 cut(s)	434, 650, 677, 682, 731
Alw26I	GTCTC	3 cut(s)	140, 272, 382
AlwI	GGATC	1 cut(s)	289
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	2 cut(s)	891, 906
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	788
AspS9I	GGNCC	2 cut(s)	823, 907
AsuHPI	GGTGA	2 cut(s)	703, 724
AvaII	GGWCC	1 cut(s)	823
BalI	TGGCCA	1 cut(s)	893
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	220, 300, 682, 822
BceAI	ACGGC	2 cut(s)	78, 103
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	140, 272, 382
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	2 cut(s)	594, 915
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	2 cut(s)	458, 678
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	771
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	823
BmgT120I	GGNCC	2 cut(s)	823, 907
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	435
Bpu1102I	GCTNAGC	2 cut(s)	458, 678
BsaI	GGTCTC	2 cut(s)	140, 382
BsaJI	CCNNGG	3 cut(s)	150, 298, 396
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	820
Bse1I	ACTGG	3 cut(s)	377, 882, 909
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	150, 298, 396
BseGI	GGATG	3 cut(s)	214, 311, 406
BseLI	CCNNNNNNNGG	1 cut(s)	820
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	5 cut(s)	51, 188, 449, 472, 692
BseNI	ACTGG	3 cut(s)	377, 882, 909
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	893, 908
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	820
BsmAI	GTCTC	3 cut(s)	140, 272, 382
BsnI	GGCC	2 cut(s)	893, 908
Bso31I	GGTCTC	2 cut(s)	140, 382
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	294
Bsp1720I	GCTNAGC	2 cut(s)	458, 678
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	2 cut(s)	74, 384
BspANI	GGCC	2 cut(s)	893, 908
BspCNI	CTCAG	5 cut(s)	50, 189, 448, 471, 691
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	1 cut(s)	666
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	1 cut(s)	289
BspTNI	GGTCTC	2 cut(s)	140, 382
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	377, 882, 909
BssECI	CCNNGG	3 cut(s)	150, 298, 396
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	3 cut(s)	150, 298, 396
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	191, 565
BstC8I	GCNNGC	2 cut(s)	781, 915
BstDEI	CTNAG	6 cut(s)	37, 197, 435, 458, 651, 678
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	214, 311, 406
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	3 cut(s)	140, 272, 382
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	905, 914
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	2 cut(s)	594, 915
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	893, 908
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	214, 311, 406
BtsI	GCAGTG	2 cut(s)	552, 894
BtsIMutI	CAGTG	2 cut(s)	552, 894
Cac8I	GCNNGC	2 cut(s)	781, 915
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	817
Cfr13I	GGNCC	2 cut(s)	823, 907
CseI	GACGC	2 cut(s)	570, 862
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	7 cut(s)	13, 299, 483, 578, 780, 818, 882
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	6 cut(s)	37, 197, 435, 458, 651, 678
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	891
Eco130I	CCWWGG	3 cut(s)	150, 298, 396
Eco31I	GGTCTC	2 cut(s)	140, 382
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	150, 298, 396
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	3 cut(s)	150, 298, 396
FaeI	CATG	7 cut(s)	16, 302, 486, 581, 783, 821, 885
FatI	CATG	7 cut(s)	12, 298, 482, 577, 779, 817, 881
FauI	CCCGC	1 cut(s)	377
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	221, 318, 413
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	893, 908
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	2 cut(s)	570, 862
Hin1II	CATG	7 cut(s)	16, 302, 486, 581, 783, 821, 885
HincII	GTYRAC	2 cut(s)	852, 936
HindII	GTYRAC	2 cut(s)	852, 936
HinfI	GANTC	4 cut(s)	57, 107, 120, 167
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	703, 724
Hpy166II	GTNNAC	5 cut(s)	157, 194, 660, 852, 936
Hpy188I	TCNGA	2 cut(s)	81, 953
Hpy188III	TCNNGA	5 cut(s)	95, 164, 292, 530, 818
Hpy8I	GTNNAC	5 cut(s)	157, 194, 660, 852, 936
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	191, 565
HpyCH4IV	ACGT	2 cut(s)	741, 848
HpyCH4V	TGCA	8 cut(s)	104, 263, 332, 557, 783, 803, 866, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	905, 914
HpyF3I	CTNAG	6 cut(s)	37, 197, 435, 458, 651, 678
HpySE526I	ACGT	2 cut(s)	741, 848
Hsp92II	CATG	7 cut(s)	16, 302, 486, 581, 783, 821, 885
Kpn2I	TCCGGA	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	741, 848
MaeIII	GTNAC	3 cut(s)	364, 550, 712
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	2 cut(s)	16, 511
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	5 cut(s)	216, 408, 516, 545, 788
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	2 cut(s)	148, 154
MnlI	CCTC	9 cut(s)	19, 91, 192, 223, 277, 296, 645, 694, 814
Mox20I	TGGCCA	1 cut(s)	893
Mph1103I	ATGCAT	1 cut(s)	265
MroI	TCCGGA	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	2 cut(s)	441, 930
Msp20I	TGGCCA	1 cut(s)	893
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	905, 914
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	7 cut(s)	16, 302, 486, 581, 783, 821, 885
NlaIV	GGNNCC	1 cut(s)	666
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	3 cut(s)	364, 550, 712
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	783
PaeI	GCATGC	1 cut(s)	783
PagI	TCATGA	1 cut(s)	817
PfeI	GAWTC	3 cut(s)	57, 107, 167
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	2 cut(s)	823, 907
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
SaqAI	TTAA	2 cut(s)	441, 930
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	2 cut(s)	823, 907
ScaI	AGTACT	1 cut(s)	771
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	492
SexAI	ACCWGGT	1 cut(s)	490
SfcI	CTRYAG	2 cut(s)	594, 915
SinI	GGWCC	1 cut(s)	823
SphI	GCATGC	1 cut(s)	783
Sse9I	AATT	5 cut(s)	216, 408, 516, 545, 788
SsiI	CCGC	2 cut(s)	74, 384
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	3 cut(s)	150, 298, 396
TaaI	ACNGT	2 cut(s)	191, 565
TaiI	ACGT	2 cut(s)	744, 851
TaqI	TCGA	1 cut(s)	873
TasI	AATT	5 cut(s)	216, 408, 516, 545, 788
TatI	WGTACW	1 cut(s)	769
TfiI	GAWTC	3 cut(s)	57, 107, 167
Tru1I	TTAA	2 cut(s)	441, 930
Tru9I	TTAA	2 cut(s)	441, 930
TscAI	CASTG	2 cut(s)	559, 901
TseFI	GTSAC	3 cut(s)	364, 550, 712
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	3 cut(s)	364, 550, 712
TspDTI	ATGAA	4 cut(s)	225, 326, 443, 781
TspGWI	ACGGA	3 cut(s)	69, 677, 931
TspRI	CASTG	2 cut(s)	559, 901
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	1 cut(s)	788
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	901
XspI	CTAG	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.