Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Reverse (-)

33723445 .. 33725249

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGAGAGTGTGGTGAACTTCCCGTATAGCCATTGCAAGATAGCCCATACATGGAGCTTCAAACACAACACCCTCCTCTTCCCCAAAACCCAAACCGCAAAACCCTCCACCAACACCAAAACCAAATCCCTCCCCTCTACTCTTTCTCGTTGCCATGCCCAGTTCTTCTCACCACCACTACCACCGCATAACACCAGTTCCCCAAAGCACGCCACCCTCCATTCCCATGAATACCACAAGCTCAAAGCCTTACTGGAGATTCTCATGGAGAAGGAGTGTTGCCCTTTGCAAGTGCTTAGAGGTGATGGAGATTGGACCAGAGACCAATTCTGGGCTGTCATCAGATTCCTCATACATGCTTCCAGGCCCAAGGAAATCTTGCAGGTGAGGAACATTGAGAAATCGCGGATTAATGAATTCAACTACAGCAAGATAATAGGATTGTTAGTGGAGGAGGACCTGATTGAAGAGGCGGTGCTGTGCTTTCAGGATATGAAGACTCATGGTCTTAGGCTGTCTGTGGAAGTATATAATTCAATTATTCATGGTCTTTCGAGAAATGGAAACTTTGATGATGCCGGACTCTTCCTTAACGAGATGAAAGAAATGAATTTGGCCCCAGACACTGATACTTATGATGGGCTCATTGAAGCTTATGGAAAATATAGAATGTATGATGAGATGGGTATGTGTCTGAAGAAAATGAGATTAAATGGCTGTTCACCAGACCAGATTACTTATAATTTGCTTATTCGAGAGTTTGCACGTGGAGGGTTACTGAAAAGGATGGAAAGAGTATATCAATCCATGGTTTCAAAAAGAATGGATTTGCAGGCTCCTACTTTGATTGCAATGCTGGAAGTTTATGCAAAATTTGGGATCTTGGAGAAGATGGAAGTGTTTTATAGAAGAGTTTTGAACTCAAGAGCAATTTTAAAGGAGGATTTGATTAAGAAAGTTGCAGAAGTTTATATTGAGAACTATATGTTTTCCAGATTAGAGAACTTGGGAGTTGATCTTTCTCCGAGATTTGGTCAGACTGATCTCGTTTGGTGTGTGCGTCTCCTTTCTCATGCAGGTATTTTGAGTCGAAGAGGTATGGATTCAGTCATTCTAGAGATGGAAGAAAAAGGTGTCCCATGGAATGCAACGGTGGGAAACATAATAATGCTAGCTTATTTGAAGATGAAAGATTTCACCCGCCTGAGAATCATGTTCTCCCAATCACTAACCCATGGTGTGGAGCCCGATATGATCACTGTTGGAATTCTATTTGATGCAATTAGGATTGGCTATGATGGGTCTGCGACTTTAGATGCATGGAGGAAGCAGGGTTTTCTTTACAAAGCAGTTGAAATGAACACCGATCCTCTTGTTATTACTACATTTGGGAGGGGGCATTTCCTCAGGAACTGTGAAGCAGCATACTCCTCTCTTGAACCTGAAGTTAGAGAAAAGAAAACATGGACTTACCAAGATCTCATTGATTCAGTGTTCAAAGACAATCAGTGTAACCTCAGTAAGAGGGACTTAATGAAGTCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

515

Amino Acids

59.48

Weight (kDa)

8.61

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	134 - 277	9.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	162 - 221	2.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	174 - 220	2.7e-11	PPR repeat family
PPR	PF01535	176 - 204	5.3e-06	PPR repeat
PPR_2	PF13041	214 - 256	2.7e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AarI	CACCTGC	1 cut(s)	373
Acc36I	ACCTGC	2 cut(s)	373, 1067
AccB7I	CCANNNNNTGG	1 cut(s)	1240
AccII	CGCG	1 cut(s)	406
AciI	CCGC	5 cut(s)	96, 185, 406, 473, 1201
AclWI	GGATC	2 cut(s)	887, 1361
AcsI	RAATTY	4 cut(s)	416, 610, 872, 1266
AcuI	CTGAAG	2 cut(s)	716, 1464
AcvI	CACGTG	1 cut(s)	767
AfiI	CCNNNNNNNGG	4 cut(s)	51, 331, 1031, 1240
AhdI	GACNNNNNGTC	1 cut(s)	504
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	4 cut(s)	57, 241, 653, 1175
AluI	AGCT	4 cut(s)	57, 241, 653, 1175
Alw26I	GTCTC	2 cut(s)	315, 1067
AlwI	GGATC	2 cut(s)	887, 1361
AlwNI	CAGNNNCTG	2 cut(s)	626, 1413
AoxI	GGCC	2 cut(s)	365, 615
ApeKI	GCWGC	1 cut(s)	1421
ApoI	RAATTY	4 cut(s)	416, 610, 872, 1266
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	1193
AspS9I	GGNCC	4 cut(s)	315, 366, 457, 616
AsuHPI	GGTGA	6 cut(s)	25, 162, 314, 397, 714, 1189
AsuNHI	GCTAGC	1 cut(s)	1171
AvaII	GGWCC	2 cut(s)	315, 457
AxyI	CCTNAGG	1 cut(s)	1406
BanII	GRGCYC	2 cut(s)	645, 1248
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	1433
BccI	CCATC	7 cut(s)	299, 632, 676, 781, 886, 1114, 1292
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	1 cut(s)	1254
BcoDI	GTCTC	2 cut(s)	315, 1067
BfaI	CTAG	2 cut(s)	1115, 1172
BfmI	CTRYAG	1 cut(s)	424
BfuAI	ACCTGC	2 cut(s)	373, 1067
BglII	AGATCT	1 cut(s)	1477
BisI	GCNGC	1 cut(s)	1422
BlsI	GCNGC	1 cut(s)	1423
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	2 cut(s)	315, 457
BmeRI	GACNNNNNGTC	1 cut(s)	504
BmgT120I	GGNCC	4 cut(s)	315, 366, 457, 616
BmiI	GGNNCC	3 cut(s)	618, 837, 1245
BmrFI	CCNGG	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	3 cut(s)	565, 1267, 1306
BmtI	GCTAGC	1 cut(s)	1175
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	907
BsaAI	YACGTR	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	4 cut(s)	369, 807, 1139, 1234
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 331, 1031, 1240
Bse1I	ACTGG	3 cut(s)	160, 195, 258
Bse21I	CCTNAGG	1 cut(s)	1406
Bse3DI	GCAATG	2 cut(s)	31, 858
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	4 cut(s)	369, 807, 1139, 1234
BseGI	GGATG	1 cut(s)	792
BseLI	CCNNNNNNNGG	4 cut(s)	51, 331, 1031, 1240
BseMI	GCAATG	2 cut(s)	31, 858
BseMII	CTCAG	3 cut(s)	1196, 1420, 1531
BseNI	ACTGG	3 cut(s)	160, 195, 258
BseRI	GAGGAG	3 cut(s)	65, 467, 1420
BseXI	GCAGC	1 cut(s)	1433
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	367, 617
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	2 cut(s)	1121, 1541
BslI	CCNNNNNNNGG	4 cut(s)	51, 331, 1031, 1240
BsmAI	GTCTC	2 cut(s)	315, 1067
BsmBI	CGTCTC	1 cut(s)	1067
BsmFI	GGGAC	2 cut(s)	1121, 1541
BsmI	GAATGC	1 cut(s)	1150
BsnI	GGCC	2 cut(s)	367, 617
Bso31I	GGTCTC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	645, 1248
Bsp143I	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
Bsp19I	CCATGG	3 cut(s)	807, 1139, 1234
BspACI	CCGC	5 cut(s)	96, 185, 406, 473, 1201
BspANI	GGCC	2 cut(s)	367, 617
BspCNI	CTCAG	3 cut(s)	1197, 1419, 1530
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	618, 837, 1245
BspMI	ACCTGC	2 cut(s)	373, 1067
BspOI	GCTAGC	1 cut(s)	1175
BspPI	GGATC	2 cut(s)	887, 1361
BspTNI	GGTCTC	1 cut(s)	315
BsrDI	GCAATG	2 cut(s)	31, 858
BsrI	ACTGG	3 cut(s)	160, 195, 258
BssECI	CCNNGG	4 cut(s)	369, 807, 1139, 1234
BssMI	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
BssT1I	CCWWGG	4 cut(s)	369, 807, 1139, 1234
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	1153, 1261, 1415
Bst6I	CTCTTC	5 cut(s)	83, 462, 590, 904, 1087
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	210, 834, 1173
BstDEI	CTNAG	5 cut(s)	296, 509, 1205, 1406, 1517
BstDSI	CCRYGG	3 cut(s)	807, 1139, 1234
BstF5I	GGATG	1 cut(s)	792
BstFNI	CGCG	1 cut(s)	406
BstKTI	GATC	6 cut(s)	882, 1018, 1045, 1257, 1369, 1480
BstMAI	GTCTC	2 cut(s)	315, 1067
BstMBI	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	1433
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	2 cut(s)	879, 1477
BstYI	RGATCY	2 cut(s)	879, 1477
Bsu36I	CCTNAGG	1 cut(s)	1406
BsuRI	GGCC	2 cut(s)	367, 617
BtgI	CCRYGG	3 cut(s)	807, 1139, 1234
BtsCI	GGATG	1 cut(s)	792
BtsIMutI	CAGTG	4 cut(s)	624, 1257, 1497, 1514
BveI	ACCTGC	2 cut(s)	373, 1067
Cac8I	GCNNGC	3 cut(s)	210, 834, 1173
CaiI	CAGNNNCTG	2 cut(s)	626, 1413
Cfr13I	GGNCC	4 cut(s)	315, 366, 457, 616
CseI	GACGC	1 cut(s)	1049
DdeI	CTNAG	5 cut(s)	296, 509, 1205, 1406, 1517
DpnI	GATC	6 cut(s)	881, 1017, 1044, 1256, 1368, 1479
DpnII	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
DraI	TTTAAA	1 cut(s)	936
DriI	GACNNNNNGTC	1 cut(s)	504
Eam1104I	CTCTTC	5 cut(s)	83, 462, 590, 904, 1087
Eam1105I	GACNNNNNGTC	1 cut(s)	504
EarI	CTCTTC	5 cut(s)	83, 462, 590, 904, 1087
Eco130I	CCWWGG	4 cut(s)	369, 807, 1139, 1234
Eco24I	GRGCYC	2 cut(s)	645, 1248
Eco31I	GGTCTC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	315, 457
Eco57I	CTGAAG	2 cut(s)	716, 1464
Eco72I	CACGTG	1 cut(s)	767
Eco81I	CCTNAGG	1 cut(s)	1406
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRI	GAATTC	2 cut(s)	416, 1266
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	4 cut(s)	369, 807, 1139, 1234
EcoT22I	ATGCAT	1 cut(s)	1321
EcoT38I	GRGCYC	2 cut(s)	645, 1248
ErhI	CCWWGG	4 cut(s)	369, 807, 1139, 1234
Esp3I	CGTCTC	1 cut(s)	1067
FalI	AAGNNNNNCTT	4 cut(s)	362, 394, 1514, 1546
FaqI	GGGAC	2 cut(s)	1121, 1541
FauI	CCCGC	1 cut(s)	1208
FbaI	TGATCA	1 cut(s)	1254
Fnu4HI	GCNGC	1 cut(s)	1422
FokI	GGATG	1 cut(s)	799
FriOI	GRGCYC	2 cut(s)	645, 1248
Fsp4HI	GCNGC	1 cut(s)	1422
FspBI	CTAG	2 cut(s)	1115, 1172
GluI	GCNGC	1 cut(s)	1422
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	367, 617
HapII	CCGG	1 cut(s)	579
HgaI	GACGC	1 cut(s)	1049
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	8 cut(s)	259, 345, 499, 582, 1087, 1103, 1209, 1487
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	6 cut(s)	25, 162, 314, 397, 714, 1189
Hpy166II	GTNNAC	2 cut(s)	16, 722
Hpy188I	TCNGA	4 cut(s)	344, 696, 1026, 1038
Hpy188III	TCNNGA	9 cut(s)	488, 555, 755, 924, 993, 1115, 1408, 1436, 1542
Hpy8I	GTNNAC	2 cut(s)	16, 722
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	3 cut(s)	1153, 1261, 1415
HpyCH4IV	ACGT	1 cut(s)	766
HpyF3I	CTNAG	5 cut(s)	296, 509, 1205, 1406, 1517
HpySE526I	ACGT	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	1254
Kzo9I	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
LmnI	GCTCC	3 cut(s)	54, 841, 1243
Lsp1109I	GCAGC	1 cut(s)	1433
LweI	GCATC	3 cut(s)	565, 1267, 1306
MaeI	CTAG	2 cut(s)	1115, 1172
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	774, 1511
MalI	GATC	6 cut(s)	881, 1017, 1044, 1256, 1368, 1479
MboI	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
MflI	RGATCY	2 cut(s)	879, 1477
MhlI	GDGCHC	2 cut(s)	645, 1248
MlyI	GAGTC	3 cut(s)	493, 576, 1096
MmeI	TCCRAC	1 cut(s)	1243
Mph1103I	ATGCAT	1 cut(s)	1321
MroXI	GAANNNNTTC	1 cut(s)	1193
MseI	TTAA	6 cut(s)	411, 591, 710, 935, 951, 1532
MslI	CAYNNNNRTG	2 cut(s)	225, 1166
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	1150
MvaI	CCWGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	406
NcoI	CCATGG	3 cut(s)	807, 1139, 1234
NdeII	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
NheI	GCTAGC	1 cut(s)	1171
NlaIV	GGNNCC	3 cut(s)	618, 837, 1245
NsiI	ATGCAT	1 cut(s)	1321
NspI	RCATGY	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	373
PctI	GAATGC	1 cut(s)	1150
PdmI	GAANNNNTTC	1 cut(s)	1193
PfeI	GAWTC	5 cut(s)	259, 345, 1103, 1209, 1487
PflMI	CCANNNNNTGG	1 cut(s)	1240
PkrI	GCNGC	1 cut(s)	1423
PleI	GAGTC	3 cut(s)	493, 576, 1095
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	3 cut(s)	493, 576, 1095
Ppu21I	YACGTR	1 cut(s)	767
PpuMI	RGGWCCY	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	362
PspCI	CACGTG	1 cut(s)	767
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	3 cut(s)	618, 837, 1245
PspPI	GGNCC	4 cut(s)	315, 366, 457, 616
PspPPI	RGGWCCY	1 cut(s)	457
PstNI	CAGNNNCTG	2 cut(s)	626, 1413
PsuI	RGATCY	2 cut(s)	879, 1477
RseI	CAYNNNNRTG	2 cut(s)	225, 1166
SaqAI	TTAA	6 cut(s)	411, 591, 710, 935, 951, 1532
SatI	GCNGC	1 cut(s)	1422
Sau3AI	GATC	6 cut(s)	879, 1015, 1042, 1254, 1366, 1477
Sau96I	GGNCC	4 cut(s)	315, 366, 457, 616
SchI	GAGTC	3 cut(s)	493, 576, 1096
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	645, 1248
SfaNI	GCATC	3 cut(s)	565, 1267, 1306
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	2 cut(s)	315, 457
SmiMI	CAYNNNNRTG	2 cut(s)	225, 1166
SmlI	CTYRAG	1 cut(s)	922
SmoI	CTYRAG	1 cut(s)	922
SsiI	CCGC	5 cut(s)	96, 185, 406, 473, 1201
SspMI	CTAG	2 cut(s)	1115, 1172
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	4 cut(s)	369, 807, 1139, 1234
TaaI	ACNGT	3 cut(s)	1153, 1261, 1415
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	3 cut(s)	554, 754, 1090
TfiI	GAWTC	5 cut(s)	259, 345, 1103, 1209, 1487
Tru1I	TTAA	6 cut(s)	411, 591, 710, 935, 951, 1532
Tru9I	TTAA	6 cut(s)	411, 591, 710, 935, 951, 1532
TscAI	CASTG	4 cut(s)	631, 1264, 1497, 1514
TseI	GCWGC	1 cut(s)	1421
TspDTI	ATGAA	8 cut(s)	243, 429, 509, 533, 614, 623, 1202, 1373
TspRI	CASTG	4 cut(s)	631, 1264, 1497, 1514
Van91I	CCANNNNNTGG	1 cut(s)	1240
VpaK11BI	GGWCC	2 cut(s)	315, 457
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	4 cut(s)	416, 610, 872, 1266
XbaI	TCTAGA	1 cut(s)	1114
XceI	RCATGY	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	1193
XspI	CTAG	2 cut(s)	1115, 1172
Zsp2I	ATGCAT	1 cut(s)	1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.