Rmu_sc0005941.1_g000004

endonuclease activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005941.1
Physical Location & Seq
Forward (+)
21304 .. 22998
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005941.1_g000004.1.cds

Sequence Viewer

Length: 1695 bp
atggggccgaggagcgctgggaatccaccaccatactcgtccacagctccgcgtccacctgacctagaggaagtcaggaggaggaggatccaaatcgcgagagaagaaacagctgcatggtgccgtgaatttgagaaaaccatggcatcagtccagtctgagatactaactgaattgaggcaatttcgattagagcaatcgaggccgccaccaccaccacgaccaccggccactgcggatccctacgcctaccagccgcaacaaccaccacatttggcgcttctgtggagtctgccacctcactcctaccatctacctacactgtcgggccaatatccaccatatccgcctcttgttccgacgggccattatagactcctaccatatgcgcacatggaccggttcgtgactcttccaccactggcacagttcaccaccagcccgcttcctctgttggacgacgctcctccgctgattcacctacctacattccatagctcgcgactccaaatcagctctccaccgctggcacagcccaccacgaagcctcctcctctgctcgacgacgccgtttcggctcagccgaacaattcccctgcatctttttgctcggtaagtggtactaacacaagtgtttctaatcagttcaattgtcacaaggatgattgtggtggtatgggttttgtgtttggtgctactggtattgatgagaaattagagaatgggaagagtgtcgagaagagggttgaggtgactagtggagatggtagagagttcagtgagcttgagtgtgtcattgctaagcaggacgagggtagtctagttgaagttaaggagcagcttagcaatgggatgtcagaatttcatgccatccaactgtttgataaaatgccaaagttagatgggttgtgtaatgcaagaaggaacattgctgcggttatgcgcattcgtgacaaagatgatagagttgataaatcaaatgtggttcttggtgatagcaatggtttacaccccattagatataaaatggtgacaaatgcatcagaagctattaaaacaactagtgccactgacagtgtgattgagagctgcttcaaatttgttgatcaggatgctgaagcgaggacaattatagcagctaatctagataggaacatgaacactaaagttgctagtgaaccaattgagaatggctttaagctagatggatcaaatgcaaagaattcagaatatgtgcgagatgatgaagttgattcattagagaaggagcatagtgatggggttgatgataaggaaaatgatgtcaagcaactggtttttgatgagaaattgagcattttccagtcaagttatttaagcggagtcactgttgtctcatcccaaatgcatggtttggaagataaccttgaagcagatgtcagcaatatcaagccaatgattaaaagtgtgcctattaaaggtgaagccaatatgtctcagtccgtgatcattatgtttaacaaccaaagtccagataaaataagagcctctgcagatgttgtgatacctcagataactaaaatctatatggttggttttcctgaaggacatgaaacttatggtaaatccagtgagtctttacaagtgaaccttgaggctagtgatgctgaattaaatcgcactacccacttacttggtccgtgttgtgccaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

564

Amino Acids

62.2

Weight (kDa)

5.27

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 390, 944
AccB1I GGYRCC 1 cut(s) 120
AccII CGCG 3 cut(s) 52, 98, 502
AclWI GGATC 5 cut(s) 82, 95, 233, 246, 1216
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 4 cut(s) 128, 860, 1097, 1222
AcuI CTGAAG 2 cut(s) 1137, 1602
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 1 cut(s) 622
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 1457
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 4 cut(s) 649, 827, 1096, 1409
AhlI ACTAGT 2 cut(s) 755, 1061
Alw26I GTCTC 2 cut(s) 1378, 1479
AlwI GGATC 5 cut(s) 82, 95, 233, 246, 1216
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 5 cut(s) 5, 203, 228, 328, 364
ApeKI GCWGC 5 cut(s) 113, 838, 932, 1089, 1136
ApoI RAATTY 4 cut(s) 128, 860, 1097, 1222
AsiGI ACCGGT 1 cut(s) 399
AspLEI GCGC 4 cut(s) 17, 280, 391, 945
AspS9I GGNCC 5 cut(s) 5, 328, 364, 397, 1676
AsuHPI GGTGA 6 cut(s) 424, 470, 763, 1004, 1042, 1472
AvaII GGWCC 2 cut(s) 397, 1676
BamHI GGATCC 2 cut(s) 87, 238
BanI GGYRCC 1 cut(s) 120
BbvI GCAGC 5 cut(s) 100, 850, 919, 1076, 1148
BccI CCATC 6 cut(s) 318, 758, 878, 896, 1199, 1271
BceAI ACGGC 2 cut(s) 108, 554
BclI TGATCA 2 cut(s) 1105, 1485
BcoDI GTCTC 2 cut(s) 1378, 1479
BcuI ACTAGT 2 cut(s) 755, 1061
BfaI CTAG 8 cut(s) 65, 756, 821, 1062, 1145, 1173, 1202, 1638
BfmI CTRYAG 1 cut(s) 1530
BfoI RGCGCY 2 cut(s) 18, 281
BglI GCCNNNNNGGC 1 cut(s) 575
BisI GCNGC 7 cut(s) 114, 206, 257, 839, 933, 1090, 1137
BlpI GCTNAGC 3 cut(s) 579, 801, 842
BlsI GCNGC 7 cut(s) 115, 207, 258, 840, 934, 1091, 1138
Bme18I GGWCC 2 cut(s) 397, 1676
BmgT120I GGNCC 5 cut(s) 5, 328, 364, 397, 1676
BmiI GGNNCC 4 cut(s) 6, 89, 122, 240
BmsI GCATC 5 cut(s) 155, 608, 1049, 1102, 1633
Bpu1102I GCTNAGC 3 cut(s) 579, 801, 842
BpuEI CTTGAG 2 cut(s) 806, 1652
BsaBI GATNNNNATC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 8, 141
BsaWI WCCGGW 1 cut(s) 399
BsaXI ACNNNNNCTCC 4 cut(s) 532, 562, 1353, 1383
Bsc4I CCNNNNNNNGG 1 cut(s) 1457
Bse118I RCCGGY 2 cut(s) 226, 399
Bse1I ACTGG 6 cut(s) 154, 426, 703, 1317, 1342, 1608
Bse3DI GCAATG 4 cut(s) 795, 853, 927, 1006
Bse8I GATNNNNATC 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 8, 141
BseGI GGATG 5 cut(s) 667, 858, 870, 1117, 1376
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 1457
BseMI GCAATG 4 cut(s) 795, 853, 927, 1006
BseMII CTCAG 4 cut(s) 150, 593, 1490, 1562
BseNI ACTGG 6 cut(s) 154, 426, 703, 1317, 1342, 1608
BseRI GAGGAG 6 cut(s) 25, 94, 97, 456, 540, 543
BseXI GCAGC 5 cut(s) 100, 850, 919, 1076, 1148
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 3 cut(s) 52, 98, 502
BshFI GGCC 5 cut(s) 7, 205, 230, 330, 366
BshNI GGYRCC 1 cut(s) 120
BshTI ACCGGT 1 cut(s) 399
BsiSI CCGG 2 cut(s) 227, 400
BslI CCNNNNNNNGG 1 cut(s) 1457
BsmAI GTCTC 2 cut(s) 1378, 1479
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 5 cut(s) 7, 205, 230, 330, 366
Bsp143I GATC 5 cut(s) 87, 238, 1105, 1208, 1485
Bsp1720I GCTNAGC 3 cut(s) 579, 801, 842
Bsp19I CCATGG 1 cut(s) 141
Bsp68I TCGCGA 2 cut(s) 98, 502
BspANI GGCC 5 cut(s) 7, 205, 230, 330, 366
BspCNI CTCAG 4 cut(s) 151, 592, 1489, 1561
BspFNI CGCG 3 cut(s) 52, 98, 502
BspLI GGNNCC 4 cut(s) 6, 89, 122, 240
BspMAI CTGCAG 1 cut(s) 1534
BspPI GGATC 5 cut(s) 82, 95, 233, 246, 1216
BspT107I GGYRCC 1 cut(s) 120
BsrDI GCAATG 4 cut(s) 795, 853, 927, 1006
BsrFI RCCGGY 2 cut(s) 226, 399
BsrI ACTGG 6 cut(s) 154, 426, 703, 1317, 1342, 1608
BssAI RCCGGY 2 cut(s) 226, 399
BssECI CCNNGG 2 cut(s) 8, 141
BssMI GATC 5 cut(s) 87, 238, 1105, 1208, 1485
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 5 cut(s) 324, 429, 879, 1076, 1369
Bst6I CTCTTC 3 cut(s) 417, 722, 734
BstACI GRCGYC 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 443, 500, 528
BstDEI CTNAG 6 cut(s) 159, 579, 801, 842, 1476, 1548
BstDSI CCRYGG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 1455
BstF5I GGATG 5 cut(s) 667, 858, 870, 1117, 1376
BstFNI CGCG 3 cut(s) 52, 98, 502
BstH2I RGCGCY 2 cut(s) 18, 281
BstHHI GCGC 4 cut(s) 17, 280, 391, 945
BstKTI GATC 5 cut(s) 90, 241, 1108, 1211, 1488
BstMAI GTCTC 2 cut(s) 1378, 1479
BstMBI GATC 5 cut(s) 87, 238, 1105, 1208, 1485
BstMWI GCNNNNNNNGC 5 cut(s) 202, 532, 575, 1046, 1643
BstSFI CTRYAG 1 cut(s) 1530
BstUI CGCG 3 cut(s) 52, 98, 502
BstV1I GCAGC 5 cut(s) 100, 850, 919, 1076, 1148
BstX2I RGATCY 2 cut(s) 87, 238
BstXI CCANNNNNNTGG 2 cut(s) 1388, 1673
BstYI RGATCY 2 cut(s) 87, 238
BsuRI GGCC 5 cut(s) 7, 205, 230, 330, 366
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 5 cut(s) 667, 858, 870, 1117, 1376
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 8 cut(s) 231, 320, 419, 784, 1068, 1081, 1365, 1615
BtuMI TCGCGA 2 cut(s) 98, 502
Cac8I GCNNGC 3 cut(s) 443, 500, 528
CfoI GCGC 4 cut(s) 17, 280, 391, 945
Cfr10I RCCGGY 2 cut(s) 226, 399
Cfr13I GGNCC 5 cut(s) 5, 328, 364, 397, 1676
CseI GACGC 3 cut(s) 41, 470, 575
Csp6I GTAC 1 cut(s) 621
CspAI ACCGGT 1 cut(s) 399
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviAII CATG 7 cut(s) 117, 142, 394, 866, 1156, 1388, 1589
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 6 cut(s) 159, 579, 801, 842, 1476, 1548
DpnI GATC 5 cut(s) 89, 240, 1107, 1210, 1487
DpnII GATC 5 cut(s) 87, 238, 1105, 1208, 1485
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 417, 722, 734
EarI CTCTTC 3 cut(s) 417, 722, 734
EciI GGCGGA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 397, 1676
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 1137, 1602
EcoNI CCTNNNNNAGG 1 cut(s) 1455
EcoRI GAATTC 1 cut(s) 1222
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 2 cut(s) 1042, 1389
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 7 cut(s) 120, 145, 397, 869, 1159, 1391, 1592
FalI AAGNNNNNCTT 4 cut(s) 1389, 1421, 1614, 1646
FatI CATG 7 cut(s) 116, 141, 393, 865, 1155, 1387, 1588
FauI CCCGC 1 cut(s) 450
FauNDI CATATG 1 cut(s) 385
FbaI TGATCA 2 cut(s) 1105, 1485
Fnu4HI GCNGC 7 cut(s) 114, 206, 257, 839, 933, 1090, 1137
FokI GGATG 5 cut(s) 674, 857, 865, 1124, 1363
Fsp4HI GCNGC 7 cut(s) 114, 206, 257, 839, 933, 1090, 1137
FspAI RTGCGCAY 2 cut(s) 390, 944
FspBI CTAG 8 cut(s) 65, 756, 821, 1062, 1145, 1173, 1202, 1638
FspI TGCGCA 2 cut(s) 390, 944
GlaI GCGC 4 cut(s) 16, 279, 390, 944
GluI GCNGC 7 cut(s) 114, 206, 257, 839, 933, 1090, 1137
GsaI CCCAGC 1 cut(s) 21
HaeII RGCGCY 2 cut(s) 18, 281
HaeIII GGCC 5 cut(s) 7, 205, 230, 330, 366
HapII CCGG 2 cut(s) 227, 400
HgaI GACGC 3 cut(s) 41, 470, 575
HhaI GCGC 4 cut(s) 17, 280, 391, 945
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 7 cut(s) 120, 145, 397, 869, 1159, 1391, 1592
Hin6I GCGC 4 cut(s) 15, 278, 389, 943
HinP1I GCGC 4 cut(s) 15, 278, 389, 943
HinfI GANTC 9 cut(s) 22, 289, 375, 409, 475, 504, 1253, 1362, 1613
HpaII CCGG 2 cut(s) 227, 400
HphI GGTGA 6 cut(s) 424, 470, 763, 1004, 1042, 1472
Hpy166II GTNNAC 6 cut(s) 42, 56, 432, 1007, 1178, 1627
Hpy188I TCNGA 6 cut(s) 160, 360, 859, 1045, 1228, 1551
Hpy8I GTNNAC 6 cut(s) 42, 56, 432, 1007, 1178, 1627
Hpy99I CGWCG 4 cut(s) 364, 464, 566, 569
HpyAV CCTTC 3 cut(s) 915, 1258, 1577
HpyCH4III ACNGT 5 cut(s) 324, 429, 879, 1076, 1369
HpyCH4V TGCA 7 cut(s) 116, 599, 917, 1040, 1217, 1387, 1532
HpyF10VI GCNNNNNNNGC 5 cut(s) 202, 532, 575, 1046, 1643
HpyF3I CTNAG 6 cut(s) 159, 579, 801, 842, 1476, 1548
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 7 cut(s) 120, 145, 397, 869, 1159, 1391, 1592
HspAI GCGC 4 cut(s) 15, 278, 389, 943
Ksp22I TGATCA 2 cut(s) 1105, 1485
Kzo9I GATC 5 cut(s) 87, 238, 1105, 1208, 1485
LmnI GCTCC 5 cut(s) 12, 52, 469, 835, 1267
Lsp1109I GCAGC 5 cut(s) 100, 850, 919, 1076, 1148
LweI GCATC 5 cut(s) 155, 608, 1049, 1102, 1633
MaeI CTAG 8 cut(s) 65, 756, 821, 1062, 1145, 1173, 1202, 1638
MaeIII GTNAC 6 cut(s) 406, 653, 751, 950, 1030, 1363
MalI GATC 5 cut(s) 89, 240, 1107, 1210, 1487
MboI GATC 5 cut(s) 87, 238, 1105, 1208, 1485
MboII GAAGA 5 cut(s) 116, 404, 739, 751, 1409
MfeI CAATTG 2 cut(s) 649, 1182
MflI RGATCY 2 cut(s) 87, 238
MlyI GAGTC 6 cut(s) 298, 369, 403, 498, 1371, 1622
MmeI TCCRAC 3 cut(s) 383, 435, 898
Mph1103I ATGCAT 2 cut(s) 1042, 1389
MseI TTAA 8 cut(s) 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652
MslI CAYNNNNRTG 2 cut(s) 660, 1275
MspA1I CMGCKG 3 cut(s) 113, 472, 526
MspI CCGG 2 cut(s) 227, 400
MunI CAATTG 2 cut(s) 649, 1182
Mva1269I GAATGC 1 cut(s) 945
MvnI CGCG 3 cut(s) 52, 98, 502
MwoI GCNNNNNNNGC 5 cut(s) 202, 532, 575, 1046, 1643
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 385
NdeII GATC 5 cut(s) 87, 238, 1105, 1208, 1485
NlaIII CATG 7 cut(s) 120, 145, 397, 869, 1159, 1391, 1592
NlaIV GGNNCC 4 cut(s) 6, 89, 122, 240
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 6 cut(s) 406, 653, 751, 950, 1030, 1363
NruI TCGCGA 2 cut(s) 98, 502
NsbI TGCGCA 2 cut(s) 390, 944
NsiI ATGCAT 2 cut(s) 1042, 1389
PcsI WCGNNNNNNNCGW 2 cut(s) 567, 581
PctI GAATGC 1 cut(s) 945
PfeI GAWTC 3 cut(s) 22, 475, 1253
PinAI ACCGGT 1 cut(s) 399
PkrI GCNGC 7 cut(s) 115, 207, 258, 840, 934, 1091, 1138
PleI GAGTC 6 cut(s) 297, 369, 403, 498, 1370, 1621
PpsI GAGTC 6 cut(s) 297, 369, 403, 498, 1370, 1621
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 4 cut(s) 6, 89, 122, 240
PspPI GGNCC 5 cut(s) 5, 328, 364, 397, 1676
PstI CTGCAG 1 cut(s) 1534
PsuI RGATCY 2 cut(s) 87, 238
PvuII CAGCTG 1 cut(s) 113
RruI TCGCGA 2 cut(s) 98, 502
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 2 cut(s) 660, 1275
SaqAI TTAA 8 cut(s) 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652
SatI GCNGC 7 cut(s) 114, 206, 257, 839, 933, 1090, 1137
Sau3AI GATC 5 cut(s) 87, 238, 1105, 1208, 1485
Sau96I GGNCC 5 cut(s) 5, 328, 364, 397, 1676
SchI GAGTC 6 cut(s) 298, 369, 403, 498, 1371, 1622
SfaNI GCATC 5 cut(s) 155, 608, 1049, 1102, 1633
SfcI CTRYAG 1 cut(s) 1530
SinI GGWCC 2 cut(s) 397, 1676
SmiMI CAYNNNNRTG 2 cut(s) 660, 1275
SmlI CTYRAG 2 cut(s) 785, 1631
SmoI CTYRAG 2 cut(s) 785, 1631
SpeI ACTAGT 2 cut(s) 755, 1061
SspMI CTAG 8 cut(s) 65, 756, 821, 1062, 1145, 1173, 1202, 1638
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 5 cut(s) 324, 429, 879, 1076, 1369
TaqI TCGA 4 cut(s) 187, 200, 561, 735
TauI GCSGC 2 cut(s) 208, 259
TfiI GAWTC 3 cut(s) 22, 475, 1253
Tru1I TTAA 8 cut(s) 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652
Tru9I TTAA 8 cut(s) 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652
TscAI CASTG 8 cut(s) 238, 327, 426, 784, 1075, 1081, 1372, 1615
TseFI GTSAC 6 cut(s) 406, 653, 751, 950, 1030, 1363
TseI GCWGC 5 cut(s) 113, 838, 932, 1089, 1136
Tsp45I GTSAC 6 cut(s) 406, 653, 751, 950, 1030, 1363
TspDTI ATGAA 5 cut(s) 854, 1172, 1245, 1260, 1605
TspGWI ACGGA 2 cut(s) 1471, 1668
TspRI CASTG 8 cut(s) 238, 327, 426, 784, 1075, 1081, 1372, 1615
VpaK11BI GGWCC 2 cut(s) 397, 1676
XagI CCTNNNNNAGG 1 cut(s) 1455
XapI RAATTY 4 cut(s) 128, 860, 1097, 1222
XbaI TCTAGA 1 cut(s) 1144
XspI CTAG 8 cut(s) 65, 756, 821, 1062, 1145, 1173, 1202, 1638
Zsp2I ATGCAT 2 cut(s) 1042, 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.