endonuclease activity
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14190 |
| fragaria_vesca | FvH4_4g12861 FvH4_4g12861 |
| malus_domestica | MD04G1021700.v1.1 |
| prunus_persica | Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1 |
| pyrus_communis | pycom04g01780 pycom07g00080 |
| rosa_chinensis | RchiOBHm_Chr4g0412521 |
| rosa_laevigata | RLG00000008282 RLG00000008292 |
| rosa_multiflora | Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740 |
| rosa_rugosa | Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200 |
| rosa_samantha | Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200 |
| rosa_wichuraiana | Rw4G014570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 390, 944 |
| AccB1I | GGYRCC | 1 cut(s) | 120 |
| AccII | CGCG | 3 cut(s) | 52, 98, 502 |
| AclWI | GGATC | 5 cut(s) | 82, 95, 233, 246, 1216 |
| AcoI | YGGCCR | 1 cut(s) | 228 |
| AcsI | RAATTY | 4 cut(s) | 128, 860, 1097, 1222 |
| AcuI | CTGAAG | 2 cut(s) | 1137, 1602 |
| AcyI | GRCGYC | 1 cut(s) | 567 |
| AfaI | GTAC | 1 cut(s) | 622 |
| AfeI | AGCGCT | 1 cut(s) | 16 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1457 |
| AgeI | ACCGGT | 1 cut(s) | 399 |
| AgsI | TTSAA | 4 cut(s) | 649, 827, 1096, 1409 |
| AhlI | ACTAGT | 2 cut(s) | 755, 1061 |
| Alw26I | GTCTC | 2 cut(s) | 1378, 1479 |
| AlwI | GGATC | 5 cut(s) | 82, 95, 233, 246, 1216 |
| Aor51HI | AGCGCT | 1 cut(s) | 16 |
| AoxI | GGCC | 5 cut(s) | 5, 203, 228, 328, 364 |
| ApeKI | GCWGC | 5 cut(s) | 113, 838, 932, 1089, 1136 |
| ApoI | RAATTY | 4 cut(s) | 128, 860, 1097, 1222 |
| AsiGI | ACCGGT | 1 cut(s) | 399 |
| AspLEI | GCGC | 4 cut(s) | 17, 280, 391, 945 |
| AspS9I | GGNCC | 5 cut(s) | 5, 328, 364, 397, 1676 |
| AsuHPI | GGTGA | 6 cut(s) | 424, 470, 763, 1004, 1042, 1472 |
| AvaII | GGWCC | 2 cut(s) | 397, 1676 |
| BamHI | GGATCC | 2 cut(s) | 87, 238 |
| BanI | GGYRCC | 1 cut(s) | 120 |
| BbvI | GCAGC | 5 cut(s) | 100, 850, 919, 1076, 1148 |
| BccI | CCATC | 6 cut(s) | 318, 758, 878, 896, 1199, 1271 |
| BceAI | ACGGC | 2 cut(s) | 108, 554 |
| BclI | TGATCA | 2 cut(s) | 1105, 1485 |
| BcoDI | GTCTC | 2 cut(s) | 1378, 1479 |
| BcuI | ACTAGT | 2 cut(s) | 755, 1061 |
| BfaI | CTAG | 8 cut(s) | 65, 756, 821, 1062, 1145, 1173, 1202, 1638 |
| BfmI | CTRYAG | 1 cut(s) | 1530 |
| BfoI | RGCGCY | 2 cut(s) | 18, 281 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 575 |
| BisI | GCNGC | 7 cut(s) | 114, 206, 257, 839, 933, 1090, 1137 |
| BlpI | GCTNAGC | 3 cut(s) | 579, 801, 842 |
| BlsI | GCNGC | 7 cut(s) | 115, 207, 258, 840, 934, 1091, 1138 |
| Bme18I | GGWCC | 2 cut(s) | 397, 1676 |
| BmgT120I | GGNCC | 5 cut(s) | 5, 328, 364, 397, 1676 |
| BmiI | GGNNCC | 4 cut(s) | 6, 89, 122, 240 |
| BmsI | GCATC | 5 cut(s) | 155, 608, 1049, 1102, 1633 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 579, 801, 842 |
| BpuEI | CTTGAG | 2 cut(s) | 806, 1652 |
| BsaBI | GATNNNNATC | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 1 cut(s) | 567 |
| BsaJI | CCNNGG | 2 cut(s) | 8, 141 |
| BsaWI | WCCGGW | 1 cut(s) | 399 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 532, 562, 1353, 1383 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1457 |
| Bse118I | RCCGGY | 2 cut(s) | 226, 399 |
| Bse1I | ACTGG | 6 cut(s) | 154, 426, 703, 1317, 1342, 1608 |
| Bse3DI | GCAATG | 4 cut(s) | 795, 853, 927, 1006 |
| Bse8I | GATNNNNATC | 1 cut(s) | 92 |
| BseDI | CCNNGG | 2 cut(s) | 8, 141 |
| BseGI | GGATG | 5 cut(s) | 667, 858, 870, 1117, 1376 |
| BseJI | GATNNNNATC | 1 cut(s) | 92 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1457 |
| BseMI | GCAATG | 4 cut(s) | 795, 853, 927, 1006 |
| BseMII | CTCAG | 4 cut(s) | 150, 593, 1490, 1562 |
| BseNI | ACTGG | 6 cut(s) | 154, 426, 703, 1317, 1342, 1608 |
| BseRI | GAGGAG | 6 cut(s) | 25, 94, 97, 456, 540, 543 |
| BseXI | GCAGC | 5 cut(s) | 100, 850, 919, 1076, 1148 |
| BseYI | CCCAGC | 1 cut(s) | 17 |
| Bsh1236I | CGCG | 3 cut(s) | 52, 98, 502 |
| BshFI | GGCC | 5 cut(s) | 7, 205, 230, 330, 366 |
| BshNI | GGYRCC | 1 cut(s) | 120 |
| BshTI | ACCGGT | 1 cut(s) | 399 |
| BsiSI | CCGG | 2 cut(s) | 227, 400 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1457 |
| BsmAI | GTCTC | 2 cut(s) | 1378, 1479 |
| BsmI | GAATGC | 1 cut(s) | 945 |
| BsnI | GGCC | 5 cut(s) | 7, 205, 230, 330, 366 |
| Bsp143I | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 579, 801, 842 |
| Bsp19I | CCATGG | 1 cut(s) | 141 |
| Bsp68I | TCGCGA | 2 cut(s) | 98, 502 |
| BspANI | GGCC | 5 cut(s) | 7, 205, 230, 330, 366 |
| BspCNI | CTCAG | 4 cut(s) | 151, 592, 1489, 1561 |
| BspFNI | CGCG | 3 cut(s) | 52, 98, 502 |
| BspLI | GGNNCC | 4 cut(s) | 6, 89, 122, 240 |
| BspMAI | CTGCAG | 1 cut(s) | 1534 |
| BspPI | GGATC | 5 cut(s) | 82, 95, 233, 246, 1216 |
| BspT107I | GGYRCC | 1 cut(s) | 120 |
| BsrDI | GCAATG | 4 cut(s) | 795, 853, 927, 1006 |
| BsrFI | RCCGGY | 2 cut(s) | 226, 399 |
| BsrI | ACTGG | 6 cut(s) | 154, 426, 703, 1317, 1342, 1608 |
| BssAI | RCCGGY | 2 cut(s) | 226, 399 |
| BssECI | CCNNGG | 2 cut(s) | 8, 141 |
| BssMI | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| BssNI | GRCGYC | 1 cut(s) | 567 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 5 cut(s) | 324, 429, 879, 1076, 1369 |
| Bst6I | CTCTTC | 3 cut(s) | 417, 722, 734 |
| BstACI | GRCGYC | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 3 cut(s) | 443, 500, 528 |
| BstDEI | CTNAG | 6 cut(s) | 159, 579, 801, 842, 1476, 1548 |
| BstDSI | CCRYGG | 1 cut(s) | 141 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1455 |
| BstF5I | GGATG | 5 cut(s) | 667, 858, 870, 1117, 1376 |
| BstFNI | CGCG | 3 cut(s) | 52, 98, 502 |
| BstH2I | RGCGCY | 2 cut(s) | 18, 281 |
| BstHHI | GCGC | 4 cut(s) | 17, 280, 391, 945 |
| BstKTI | GATC | 5 cut(s) | 90, 241, 1108, 1211, 1488 |
| BstMAI | GTCTC | 2 cut(s) | 1378, 1479 |
| BstMBI | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 202, 532, 575, 1046, 1643 |
| BstSFI | CTRYAG | 1 cut(s) | 1530 |
| BstUI | CGCG | 3 cut(s) | 52, 98, 502 |
| BstV1I | GCAGC | 5 cut(s) | 100, 850, 919, 1076, 1148 |
| BstX2I | RGATCY | 2 cut(s) | 87, 238 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1388, 1673 |
| BstYI | RGATCY | 2 cut(s) | 87, 238 |
| BsuRI | GGCC | 5 cut(s) | 7, 205, 230, 330, 366 |
| BtgI | CCRYGG | 1 cut(s) | 141 |
| BtsCI | GGATG | 5 cut(s) | 667, 858, 870, 1117, 1376 |
| BtsI | GCAGTG | 1 cut(s) | 231 |
| BtsIMutI | CAGTG | 8 cut(s) | 231, 320, 419, 784, 1068, 1081, 1365, 1615 |
| BtuMI | TCGCGA | 2 cut(s) | 98, 502 |
| Cac8I | GCNNGC | 3 cut(s) | 443, 500, 528 |
| CfoI | GCGC | 4 cut(s) | 17, 280, 391, 945 |
| Cfr10I | RCCGGY | 2 cut(s) | 226, 399 |
| Cfr13I | GGNCC | 5 cut(s) | 5, 328, 364, 397, 1676 |
| CseI | GACGC | 3 cut(s) | 41, 470, 575 |
| Csp6I | GTAC | 1 cut(s) | 621 |
| CspAI | ACCGGT | 1 cut(s) | 399 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 255, 290 |
| CviAII | CATG | 7 cut(s) | 117, 142, 394, 866, 1156, 1388, 1589 |
| CviQI | GTAC | 1 cut(s) | 621 |
| DdeI | CTNAG | 6 cut(s) | 159, 579, 801, 842, 1476, 1548 |
| DpnI | GATC | 5 cut(s) | 89, 240, 1107, 1210, 1487 |
| DpnII | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| EaeI | YGGCCR | 1 cut(s) | 228 |
| Eam1104I | CTCTTC | 3 cut(s) | 417, 722, 734 |
| EarI | CTCTTC | 3 cut(s) | 417, 722, 734 |
| EciI | GGCGGA | 1 cut(s) | 336 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco47I | GGWCC | 2 cut(s) | 397, 1676 |
| Eco47III | AGCGCT | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 2 cut(s) | 1137, 1602 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1455 |
| EcoRI | GAATTC | 1 cut(s) | 1222 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| EcoT22I | ATGCAT | 2 cut(s) | 1042, 1389 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 7 cut(s) | 120, 145, 397, 869, 1159, 1391, 1592 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1389, 1421, 1614, 1646 |
| FatI | CATG | 7 cut(s) | 116, 141, 393, 865, 1155, 1387, 1588 |
| FauI | CCCGC | 1 cut(s) | 450 |
| FauNDI | CATATG | 1 cut(s) | 385 |
| FbaI | TGATCA | 2 cut(s) | 1105, 1485 |
| Fnu4HI | GCNGC | 7 cut(s) | 114, 206, 257, 839, 933, 1090, 1137 |
| FokI | GGATG | 5 cut(s) | 674, 857, 865, 1124, 1363 |
| Fsp4HI | GCNGC | 7 cut(s) | 114, 206, 257, 839, 933, 1090, 1137 |
| FspAI | RTGCGCAY | 2 cut(s) | 390, 944 |
| FspBI | CTAG | 8 cut(s) | 65, 756, 821, 1062, 1145, 1173, 1202, 1638 |
| FspI | TGCGCA | 2 cut(s) | 390, 944 |
| GlaI | GCGC | 4 cut(s) | 16, 279, 390, 944 |
| GluI | GCNGC | 7 cut(s) | 114, 206, 257, 839, 933, 1090, 1137 |
| GsaI | CCCAGC | 1 cut(s) | 21 |
| HaeII | RGCGCY | 2 cut(s) | 18, 281 |
| HaeIII | GGCC | 5 cut(s) | 7, 205, 230, 330, 366 |
| HapII | CCGG | 2 cut(s) | 227, 400 |
| HgaI | GACGC | 3 cut(s) | 41, 470, 575 |
| HhaI | GCGC | 4 cut(s) | 17, 280, 391, 945 |
| Hin1I | GRCGYC | 1 cut(s) | 567 |
| Hin1II | CATG | 7 cut(s) | 120, 145, 397, 869, 1159, 1391, 1592 |
| Hin6I | GCGC | 4 cut(s) | 15, 278, 389, 943 |
| HinP1I | GCGC | 4 cut(s) | 15, 278, 389, 943 |
| HinfI | GANTC | 9 cut(s) | 22, 289, 375, 409, 475, 504, 1253, 1362, 1613 |
| HpaII | CCGG | 2 cut(s) | 227, 400 |
| HphI | GGTGA | 6 cut(s) | 424, 470, 763, 1004, 1042, 1472 |
| Hpy166II | GTNNAC | 6 cut(s) | 42, 56, 432, 1007, 1178, 1627 |
| Hpy188I | TCNGA | 6 cut(s) | 160, 360, 859, 1045, 1228, 1551 |
| Hpy8I | GTNNAC | 6 cut(s) | 42, 56, 432, 1007, 1178, 1627 |
| Hpy99I | CGWCG | 4 cut(s) | 364, 464, 566, 569 |
| HpyAV | CCTTC | 3 cut(s) | 915, 1258, 1577 |
| HpyCH4III | ACNGT | 5 cut(s) | 324, 429, 879, 1076, 1369 |
| HpyCH4V | TGCA | 7 cut(s) | 116, 599, 917, 1040, 1217, 1387, 1532 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 202, 532, 575, 1046, 1643 |
| HpyF3I | CTNAG | 6 cut(s) | 159, 579, 801, 842, 1476, 1548 |
| Hsp92I | GRCGYC | 1 cut(s) | 567 |
| Hsp92II | CATG | 7 cut(s) | 120, 145, 397, 869, 1159, 1391, 1592 |
| HspAI | GCGC | 4 cut(s) | 15, 278, 389, 943 |
| Ksp22I | TGATCA | 2 cut(s) | 1105, 1485 |
| Kzo9I | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| LmnI | GCTCC | 5 cut(s) | 12, 52, 469, 835, 1267 |
| Lsp1109I | GCAGC | 5 cut(s) | 100, 850, 919, 1076, 1148 |
| LweI | GCATC | 5 cut(s) | 155, 608, 1049, 1102, 1633 |
| MaeI | CTAG | 8 cut(s) | 65, 756, 821, 1062, 1145, 1173, 1202, 1638 |
| MaeIII | GTNAC | 6 cut(s) | 406, 653, 751, 950, 1030, 1363 |
| MalI | GATC | 5 cut(s) | 89, 240, 1107, 1210, 1487 |
| MboI | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| MboII | GAAGA | 5 cut(s) | 116, 404, 739, 751, 1409 |
| MfeI | CAATTG | 2 cut(s) | 649, 1182 |
| MflI | RGATCY | 2 cut(s) | 87, 238 |
| MlyI | GAGTC | 6 cut(s) | 298, 369, 403, 498, 1371, 1622 |
| MmeI | TCCRAC | 3 cut(s) | 383, 435, 898 |
| Mph1103I | ATGCAT | 2 cut(s) | 1042, 1389 |
| MseI | TTAA | 8 cut(s) | 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652 |
| MslI | CAYNNNNRTG | 2 cut(s) | 660, 1275 |
| MspA1I | CMGCKG | 3 cut(s) | 113, 472, 526 |
| MspI | CCGG | 2 cut(s) | 227, 400 |
| MunI | CAATTG | 2 cut(s) | 649, 1182 |
| Mva1269I | GAATGC | 1 cut(s) | 945 |
| MvnI | CGCG | 3 cut(s) | 52, 98, 502 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 202, 532, 575, 1046, 1643 |
| NcoI | CCATGG | 1 cut(s) | 141 |
| NdeI | CATATG | 1 cut(s) | 385 |
| NdeII | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| NlaIII | CATG | 7 cut(s) | 120, 145, 397, 869, 1159, 1391, 1592 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 89, 122, 240 |
| NmeAIII | GCCGAG | 1 cut(s) | 33 |
| NmuCI | GTSAC | 6 cut(s) | 406, 653, 751, 950, 1030, 1363 |
| NruI | TCGCGA | 2 cut(s) | 98, 502 |
| NsbI | TGCGCA | 2 cut(s) | 390, 944 |
| NsiI | ATGCAT | 2 cut(s) | 1042, 1389 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 567, 581 |
| PctI | GAATGC | 1 cut(s) | 945 |
| PfeI | GAWTC | 3 cut(s) | 22, 475, 1253 |
| PinAI | ACCGGT | 1 cut(s) | 399 |
| PkrI | GCNGC | 7 cut(s) | 115, 207, 258, 840, 934, 1091, 1138 |
| PleI | GAGTC | 6 cut(s) | 297, 369, 403, 498, 1370, 1621 |
| PpsI | GAGTC | 6 cut(s) | 297, 369, 403, 498, 1370, 1621 |
| PspFI | CCCAGC | 1 cut(s) | 17 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 89, 122, 240 |
| PspPI | GGNCC | 5 cut(s) | 5, 328, 364, 397, 1676 |
| PstI | CTGCAG | 1 cut(s) | 1534 |
| PsuI | RGATCY | 2 cut(s) | 87, 238 |
| PvuII | CAGCTG | 1 cut(s) | 113 |
| RruI | TCGCGA | 2 cut(s) | 98, 502 |
| RsaI | GTAC | 1 cut(s) | 622 |
| RsaNI | GTAC | 1 cut(s) | 621 |
| RseI | CAYNNNNRTG | 2 cut(s) | 660, 1275 |
| SaqAI | TTAA | 8 cut(s) | 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652 |
| SatI | GCNGC | 7 cut(s) | 114, 206, 257, 839, 933, 1090, 1137 |
| Sau3AI | GATC | 5 cut(s) | 87, 238, 1105, 1208, 1485 |
| Sau96I | GGNCC | 5 cut(s) | 5, 328, 364, 397, 1676 |
| SchI | GAGTC | 6 cut(s) | 298, 369, 403, 498, 1371, 1622 |
| SfaNI | GCATC | 5 cut(s) | 155, 608, 1049, 1102, 1633 |
| SfcI | CTRYAG | 1 cut(s) | 1530 |
| SinI | GGWCC | 2 cut(s) | 397, 1676 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 660, 1275 |
| SmlI | CTYRAG | 2 cut(s) | 785, 1631 |
| SmoI | CTYRAG | 2 cut(s) | 785, 1631 |
| SpeI | ACTAGT | 2 cut(s) | 755, 1061 |
| SspMI | CTAG | 8 cut(s) | 65, 756, 821, 1062, 1145, 1173, 1202, 1638 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaaI | ACNGT | 5 cut(s) | 324, 429, 879, 1076, 1369 |
| TaqI | TCGA | 4 cut(s) | 187, 200, 561, 735 |
| TauI | GCSGC | 2 cut(s) | 208, 259 |
| TfiI | GAWTC | 3 cut(s) | 22, 475, 1253 |
| Tru1I | TTAA | 8 cut(s) | 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652 |
| Tru9I | TTAA | 8 cut(s) | 831, 1053, 1197, 1355, 1440, 1455, 1497, 1652 |
| TscAI | CASTG | 8 cut(s) | 238, 327, 426, 784, 1075, 1081, 1372, 1615 |
| TseFI | GTSAC | 6 cut(s) | 406, 653, 751, 950, 1030, 1363 |
| TseI | GCWGC | 5 cut(s) | 113, 838, 932, 1089, 1136 |
| Tsp45I | GTSAC | 6 cut(s) | 406, 653, 751, 950, 1030, 1363 |
| TspDTI | ATGAA | 5 cut(s) | 854, 1172, 1245, 1260, 1605 |
| TspGWI | ACGGA | 2 cut(s) | 1471, 1668 |
| TspRI | CASTG | 8 cut(s) | 238, 327, 426, 784, 1075, 1081, 1372, 1615 |
| VpaK11BI | GGWCC | 2 cut(s) | 397, 1676 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1455 |
| XapI | RAATTY | 4 cut(s) | 128, 860, 1097, 1222 |
| XbaI | TCTAGA | 1 cut(s) | 1144 |
| XspI | CTAG | 8 cut(s) | 65, 756, 821, 1062, 1145, 1173, 1202, 1638 |
| Zsp2I | ATGCAT | 2 cut(s) | 1042, 1389 |