Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Reverse (-)

14256450 .. 14258989

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G171300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGAGAGTGTAGTGAACCTGCAGCATAGCCATTGCAAAATAGCACTGACATGGAAAATCAATCACGGTACGAGCAGCTTCTTCTTCTTCCCCAAAACCCTAACCACAAAACCCTCCTGCAAAGCCGGACCATTCACTTCCTCTCTTCGCTCTGCCCAACGCCTTCCATCACCATTACGACCAGATGTAGCCCCAGATAGCAGTTCCACAAAGCACACCACCCTCCTTGTTGAGACCTTCCATGAGCACCAGAGGCTCAAAGCCTTACTTCAGAATCTCATCAATGGCTCTTGCCCTCTGCAATTGCTTGGAGAAGATGGTGATTGGACCAAAGACCAATTTTGGGCTGCCATCAGATTCCTTAAACATACTTTCAGGTTCAATGAAATTCTTCAGTTGTTTGATATGTGGAAGAACATCGAGAAATCACGGATTAATGAGTTTAACTACAGCAAGATAATAGGTTTGCTAGGTGAAGAGGGTCTGATAGAAGAGGCAGTACGATGCTTTCAAGAGATGAAGAGTCACAATCTTAGGCCGTCCTTGGAGGTTTACAATTCAGTTATTCATGTTTGTGCCAGACAAGGAAACTTTGAAGATGCTTTGTTTTTCCTTAACGAGATGAAAGAAATGAATTTGGCACCAGAAACTGATACCTATGATGGACTTATTGAAGCATATGGGAAGTATAGAATGTATGATCAGATAGGCATGTGTGTGAAGAAAATGAAATTAAATGGCTGTTCACCTGACCACATTACCTATAATTTGCTTATTCGAGAGTTTGCACGGGGTGGTTTGCTCAAAAGAATGGAAAGTGTGTATCAATCCATGCTTTCAAGAAGAATGGCTTTGCAGTCTTCTACTTTGATTGCAATGGTCGAGGTTTATGCAAAATTTGGTATTTTGGAGAAGATGGAAAATGTTTATAGGAGAGTTTTGAACTCCGGAACTGTGGTAAAGAATGACTTAATTAGGAAACTAGCTGAGGTTTATATTGATAATTATATGTTTTCCAGATTAGAGAAATTGGGAGTTGATCTTTCTTCAAGATTTGGTCAGACTGATCTTGTTTGGTGTCTGCGTCTCCTTTCCCAAGCAGGTGTTCTTAGTCAAAGAGGTATGGATTCCATTGTTGATGAGATGAAAGAACAAAATGTCCCATGGAATGAAACGGTTGCAAACATTATAATGCTGGCTTATTTGAAGATGAAAGATTTCACACACTTGAGAATCTTCCTCTCCCAATTACTAACCCAGGGTGTGGAGCCTGATATTATCACTGTTGGAATTGTATTTGATGCTAATAGGATTGGCTATGATGGGTCTAGAACTTTAGATACATGGAGGGAGAACGGCTTTCTCCGCAAAGCTGTGGAAATGAATACTGATCCTTTAGTTCTCACTACATTTGGGAAGGGGCATTTCCTTAGAAACTGTGAAGCAGCATACTCCTCCCTGGAACCTGAAGATAGAGAAAACAAAACATGGACGTACCATCACCTCATTGATTTAGTGTTCAAACACACTGAATGTAGCCTCAGTATGAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

519

Amino Acids

59.69

Weight (kDa)

7.23

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1190
AarI	CACCTGC	1 cut(s)	1091
Acc36I	ACCTGC	2 cut(s)	27, 1091
AccB1I	GGYRCC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	1264
AccIII	TCCGGA	1 cut(s)	947
AciI	CCGC	1 cut(s)	1366
AclWI	GGATC	1 cut(s)	1385
AcsI	RAATTY	3 cut(s)	387, 634, 896
AcuI	CTGAAG	3 cut(s)	254, 377, 1488
AdeI	CACNNNGTG	1 cut(s)	794
AfaI	GTAC	3 cut(s)	70, 501, 1496
AfiI	CCNNNNNNNGG	2 cut(s)	343, 1264
AgsI	TTSAA	9 cut(s)	382, 512, 596, 674, 840, 943, 1050, 1207, 1522
AjnI	CCWGG	2 cut(s)	1257, 1458
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
AloI	GAACNNNNNNTCC	2 cut(s)	1143, 1175
AluBI	AGCT	3 cut(s)	78, 986, 1373
AluI	AGCT	3 cut(s)	78, 986, 1373
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	227, 1091
AlwI	GGATC	1 cut(s)	1385
AlwNI	CAGNNNCTG	1 cut(s)	650
Aor13HI	TCCGGA	1 cut(s)	947
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	4 cut(s)	22, 75, 347, 1445
ApoI	RAATTY	3 cut(s)	387, 634, 896
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	2 cut(s)	390, 1217
AspS9I	GGNCC	2 cut(s)	128, 327
AsuHPI	GGTGA	5 cut(s)	162, 332, 485, 738, 1493
AvaII	GGWCC	2 cut(s)	128, 327
BanI	GGYRCC	1 cut(s)	640
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BbsI	GAAGAC	1 cut(s)	852
Bbv12I	GWGCWC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	987
BbvI	GCAGC	4 cut(s)	34, 87, 334, 1457
BccI	CCATC	7 cut(s)	175, 311, 359, 656, 910, 1316, 1506
BceAI	ACGGC	2 cut(s)	523, 1372
BcgI	CGANNNNNNTGC	2 cut(s)	872, 906
BciT130I	CCWGG	2 cut(s)	1259, 1460
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	227, 1091
BfaI	CTAG	3 cut(s)	470, 983, 1329
BfmI	CTRYAG	2 cut(s)	20, 448
BfuAI	ACCTGC	2 cut(s)	27, 1091
BisI	GCNGC	4 cut(s)	23, 76, 348, 1446
BlsI	GCNGC	4 cut(s)	24, 77, 349, 1447
Bme1390I	CCNGG	2 cut(s)	1259, 1460
Bme18I	GGWCC	2 cut(s)	128, 327
BmgT120I	GGNCC	2 cut(s)	128, 327
BmiI	GGNNCC	3 cut(s)	642, 1269, 1464
BmrFI	CCNGG	2 cut(s)	1259, 1460
BmsI	GCATC	3 cut(s)	494, 589, 1291
BpiI	GAAGAC	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	1249
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	5 cut(s)	543, 1163, 1257, 1258, 1458
BsaWI	WCCGGW	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 1264
Bse3DI	GCAATG	2 cut(s)	31, 882
BseAI	TCCGGA	1 cut(s)	947
BseBI	CCWGG	2 cut(s)	1259, 1460
BseDI	CCNNGG	5 cut(s)	543, 1163, 1257, 1258, 1458
BseLI	CCNNNNNNNGG	2 cut(s)	343, 1264
BseMI	GCAATG	2 cut(s)	31, 882
BseMII	CTCAG	2 cut(s)	978, 1555
BseRI	GAGGAG	1 cut(s)	1444
BseXI	GCAGC	4 cut(s)	34, 87, 334, 1457
BshFI	GGCC	1 cut(s)	538
BshNI	GGYRCC	1 cut(s)	640
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	126, 948
BslFI	GGGAC	1 cut(s)	1145
BslI	CCNNNNNNNGG	2 cut(s)	343, 1264
BsmAI	GTCTC	2 cut(s)	227, 1091
BsmBI	CGTCTC	1 cut(s)	1091
BsmFI	GGGAC	1 cut(s)	1145
BsnI	GGCC	1 cut(s)	538
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	947
Bsp143I	GATC	4 cut(s)	700, 1039, 1066, 1390
Bsp19I	CCATGG	1 cut(s)	1163
BspACI	CCGC	1 cut(s)	1366
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	2 cut(s)	979, 1554
BspEI	TCCGGA	1 cut(s)	947
BspLI	GGNNCC	3 cut(s)	642, 1269, 1464
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	2 cut(s)	27, 1091
BspPI	GGATC	1 cut(s)	1385
BspT107I	GGYRCC	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	31, 882
BssECI	CCNNGG	5 cut(s)	543, 1163, 1257, 1258, 1458
BssMI	GATC	4 cut(s)	700, 1039, 1066, 1390
BssT1I	CCWWGG	2 cut(s)	543, 1163
Bst2UI	CCWGG	2 cut(s)	1259, 1460
Bst4CI	ACNGT	5 cut(s)	68, 955, 1177, 1285, 1439
Bst6I	CTCTTC	4 cut(s)	150, 471, 486, 515
BstC8I	GCNNGC	1 cut(s)	1197
BstDEI	CTNAG	5 cut(s)	533, 987, 1109, 1430, 1541
BstDSI	CCRYGG	1 cut(s)	1163
BstKTI	GATC	4 cut(s)	703, 1042, 1069, 1393
BstMAI	GTCTC	2 cut(s)	227, 1091
BstMBI	GATC	4 cut(s)	700, 1039, 1066, 1390
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 1365
BstNI	CCWGG	2 cut(s)	1259, 1460
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	2 cut(s)	1257, 1458
BstSFI	CTRYAG	2 cut(s)	20, 448
BstV1I	GCAGC	4 cut(s)	34, 87, 334, 1457
BstV2I	GAAGAC	1 cut(s)	852
BsuRI	GGCC	1 cut(s)	538
BtgI	CCRYGG	1 cut(s)	1163
BtsIMutI	CAGTG	3 cut(s)	44, 1281, 1527
BveI	ACCTGC	2 cut(s)	27, 1091
Cac8I	GCNNGC	1 cut(s)	1197
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	128, 327
CseI	GACGC	1 cut(s)	1073
Csp6I	GTAC	3 cut(s)	69, 500, 1495
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	8 cut(s)	51, 242, 569, 712, 832, 1164, 1344, 1488
CviQI	GTAC	3 cut(s)	69, 500, 1495
DdeI	CTNAG	5 cut(s)	533, 987, 1109, 1430, 1541
DpnI	GATC	4 cut(s)	702, 1041, 1068, 1392
DpnII	GATC	4 cut(s)	700, 1039, 1066, 1390
DraIII	CACNNNGTG	1 cut(s)	794
Eam1104I	CTCTTC	4 cut(s)	150, 471, 486, 515
EarI	CTCTTC	4 cut(s)	150, 471, 486, 515
Eco130I	CCWWGG	2 cut(s)	543, 1163
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	128, 327
Eco57I	CTGAAG	3 cut(s)	254, 377, 1488
EcoRII	CCWGG	2 cut(s)	1257, 1458
EcoT14I	CCWWGG	2 cut(s)	543, 1163
ErhI	CCWWGG	2 cut(s)	543, 1163
Esp3I	CGTCTC	1 cut(s)	1091
FaeI	CATG	8 cut(s)	54, 245, 572, 715, 835, 1167, 1347, 1491
FalI	AAGNNNNNCTT	6 cut(s)	252, 284, 835, 867, 953, 985
FaqI	GGGAC	1 cut(s)	1145
FatI	CATG	8 cut(s)	50, 241, 568, 711, 831, 1163, 1343, 1487
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	23, 76, 348, 1446
Fsp4HI	GCNGC	4 cut(s)	23, 76, 348, 1446
FspBI	CTAG	3 cut(s)	470, 983, 1329
GluI	GCNGC	4 cut(s)	23, 76, 348, 1446
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	2 cut(s)	126, 948
HgaI	GACGC	1 cut(s)	1073
Hin1II	CATG	8 cut(s)	54, 245, 572, 715, 835, 1167, 1347, 1491
HinfI	GANTC	5 cut(s)	274, 357, 523, 1127, 1233
HpaII	CCGG	2 cut(s)	126, 948
HphI	GGTGA	5 cut(s)	162, 332, 485, 738, 1493
Hpy166II	GTNNAC	3 cut(s)	16, 553, 746
Hpy188I	TCNGA	5 cut(s)	273, 356, 486, 705, 1062
Hpy188III	TCNNGA	8 cut(s)	421, 512, 779, 840, 948, 1017, 1050, 1329
Hpy8I	GTNNAC	3 cut(s)	16, 553, 746
HpyAV	CCTTC	4 cut(s)	173, 247, 1411, 1543
HpyCH4III	ACNGT	5 cut(s)	68, 955, 1177, 1285, 1439
HpyCH4IV	ACGT	1 cut(s)	1493
HpyCH4V	TGCA	9 cut(s)	22, 36, 120, 301, 788, 856, 875, 893, 1181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 1365
HpyF3I	CTNAG	5 cut(s)	533, 987, 1109, 1430, 1541
HpySE526I	ACGT	1 cut(s)	1493
Hsp92II	CATG	8 cut(s)	54, 245, 572, 715, 835, 1167, 1347, 1491
Kpn2I	TCCGGA	1 cut(s)	947
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	700, 1039, 1066, 1390
LmnI	GCTCC	1 cut(s)	1267
Lsp1109I	GCAGC	4 cut(s)	34, 87, 334, 1457
LweI	GCATC	3 cut(s)	494, 589, 1291
MaeI	CTAG	3 cut(s)	470, 983, 1329
MaeII	ACGT	1 cut(s)	1493
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	4 cut(s)	702, 1041, 1068, 1392
MboI	GATC	4 cut(s)	700, 1039, 1066, 1390
MfeI	CAATTG	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	1 cut(s)	1267
MroI	TCCGGA	1 cut(s)	947
MroXI	GAANNNNTTC	2 cut(s)	390, 1217
MseI	TTAA	6 cut(s)	363, 435, 444, 615, 734, 971
MslI	CAYNNNNRTG	4 cut(s)	49, 573, 716, 1190
MspI	CCGG	2 cut(s)	126, 948
MspR9I	CCNGG	2 cut(s)	1259, 1460
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	1259, 1460
MwoI	GCNNNNNNNGC	2 cut(s)	253, 1365
NcoI	CCATGG	1 cut(s)	1163
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	700, 1039, 1066, 1390
NlaIII	CATG	8 cut(s)	54, 245, 572, 715, 835, 1167, 1347, 1491
NlaIV	GGNNCC	3 cut(s)	642, 1269, 1464
NmuCI	GTSAC	1 cut(s)	524
NspI	RCATGY	1 cut(s)	715
PaqCI	CACCTGC	1 cut(s)	1091
PasI	CCCWGGG	1 cut(s)	1258
PdmI	GAANNNNTTC	2 cut(s)	390, 1217
PfeI	GAWTC	4 cut(s)	274, 357, 1127, 1233
PflMI	CCANNNNNTGG	1 cut(s)	1264
PkrI	GCNGC	4 cut(s)	24, 77, 349, 1447
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PshBI	ATTAAT	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	1190
Psp6I	CCWGG	2 cut(s)	1257, 1458
PspGI	CCWGG	2 cut(s)	1257, 1458
PspN4I	GGNNCC	3 cut(s)	642, 1269, 1464
PspPI	GGNCC	2 cut(s)	128, 327
PsrI	GAACNNNNNNTAC	2 cut(s)	1324, 1356
PstI	CTGCAG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	650
RsaI	GTAC	3 cut(s)	70, 501, 1496
RsaNI	GTAC	3 cut(s)	69, 500, 1495
RseI	CAYNNNNRTG	4 cut(s)	49, 573, 716, 1190
SaqAI	TTAA	6 cut(s)	363, 435, 444, 615, 734, 971
SatI	GCNGC	4 cut(s)	23, 76, 348, 1446
Sau3AI	GATC	4 cut(s)	700, 1039, 1066, 1390
Sau96I	GGNCC	2 cut(s)	128, 327
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	1259, 1460
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	3 cut(s)	494, 589, 1291
SfcI	CTRYAG	2 cut(s)	20, 448
SinI	GGWCC	2 cut(s)	128, 327
SmiMI	CAYNNNNRTG	4 cut(s)	49, 573, 716, 1190
SmlI	CTYRAG	1 cut(s)	1228
SmoI	CTYRAG	1 cut(s)	1228
SsiI	CCGC	1 cut(s)	1366
SspMI	CTAG	3 cut(s)	470, 983, 1329
StyD4I	CCNGG	2 cut(s)	1257, 1458
StyI	CCWWGG	2 cut(s)	543, 1163
TaaI	ACNGT	5 cut(s)	68, 955, 1177, 1285, 1439
TaiI	ACGT	1 cut(s)	1496
TaqI	TCGA	3 cut(s)	420, 778, 882
TfiI	GAWTC	4 cut(s)	274, 357, 1127, 1233
Tru1I	TTAA	6 cut(s)	363, 435, 444, 615, 734, 971
Tru9I	TTAA	6 cut(s)	363, 435, 444, 615, 734, 971
TscAI	CASTG	3 cut(s)	51, 1288, 1534
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	4 cut(s)	22, 75, 347, 1445
Tsp45I	GTSAC	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	3 cut(s)	51, 1288, 1534
Van91I	CCANNNNNTGG	1 cut(s)	1264
VpaK11BI	GGWCC	2 cut(s)	128, 327
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	3 cut(s)	387, 634, 896
XbaI	TCTAGA	1 cut(s)	1328
XceI	RCATGY	1 cut(s)	715
XmnI	GAANNNNTTC	2 cut(s)	390, 1217
XspI	CTAG	3 cut(s)	470, 983, 1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.