Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000950.1

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Forward (+)

61113 .. 61832

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000950.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaacaataaagttgctagtgaactagttgagaatgactttaagctagaaggatcaaatgtaaagaattcagaatatgtgcgagatgatgaagttaatccattagagaatgagcatggtgatgggtttaatgataaggaaaatgatgtcaagcaacttattttcaacgagaatttgagcatcttccagtcaagttatttaagtggagggactgttgtctcttccgatatgcatgaattagaagctagccttgaactggatgttggtagcagcaaaccttctctagtctctaaagaccttgattcaaaggaatcaaccaaacctgttggtaattataataatattttcatcatgggttgcaccaggtctcctgacaatttcaaagttgatgaccacatatgtgattcccacagaattgtcattgagctgttgattactttttacttgggatacatagataagcagcgtagcatcggaagagagctagcaaatgaagagaaacctattgagagccaaaaattagctggtctgatacttgagaattctttggatgttaaagaacaacataggaagtctgatgttgttcagtggtggctggcactagacccttctgcgaaacaccagattaaaatgttcttgttacagagcctctcttcccttatatcagatgcttgttcaactacttcacaagtctttacgaaagttgcgcctcagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N

Protein Analysis

239

Amino Acids

26.86

Weight (kDa)

4.84

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	3 cut(s)	67, 172, 541
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	5 cut(s)	166, 254, 306, 382, 678
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	5 cut(s)	46, 245, 427, 484, 524
AluI	AGCT	5 cut(s)	46, 245, 427, 484, 524
Alw26I	GTCTC	3 cut(s)	223, 292, 372
AlwI	GGATC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	270, 463
ApoI	RAATTY	3 cut(s)	67, 172, 541
AspLEI	GCGC	1 cut(s)	709
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	2 cut(s)	245, 484
BbvI	GCAGC	2 cut(s)	282, 475
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	364
BciVI	GTATCC	1 cut(s)	443
BcoDI	GTCTC	3 cut(s)	223, 292, 372
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	7 cut(s)	18, 26, 47, 246, 284, 485, 602
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	2 cut(s)	271, 464
BlsI	GCNGC	2 cut(s)	272, 465
Bme1390I	CCNGG	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	189, 480, 658
BmtI	GCTAGC	2 cut(s)	249, 488
BoxI	GACNNNNGTC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	372
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	187, 261
BseBI	CCWGG	1 cut(s)	364
BseGI	GGATG	2 cut(s)	265, 556
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	187, 261
BseXI	GCAGC	2 cut(s)	282, 475
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	3 cut(s)	223, 292, 372
BsmFI	GGGAC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	53
BspOI	GCTAGC	2 cut(s)	249, 488
BspPI	GGATC	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	187, 261
BssMI	GATC	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	4 cut(s)	226, 472, 489, 658
BstC8I	GCNNGC	3 cut(s)	247, 486, 597
BstDEI	CTNAG	1 cut(s)	711
BstF5I	GGATG	2 cut(s)	265, 556
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	3 cut(s)	223, 292, 372
BstMBI	GATC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	364
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	282, 475
BsuI	GTATCC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	265, 556
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	3 cut(s)	247, 486, 597
CfoI	GCGC	1 cut(s)	709
CsiI	ACCWGGT	1 cut(s)	362
CviAII	CATG	3 cut(s)	116, 233, 352
CviJI	RGCY	9 cut(s)	46, 245, 249, 427, 484, 513, 524, 595, 648
CviKI_1	RGCY	9 cut(s)	46, 245, 249, 427, 484, 513, 524, 595, 648
DdeI	CTNAG	1 cut(s)	711
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eam1104I	CTCTTC	4 cut(s)	226, 472, 489, 658
EarI	CTCTTC	4 cut(s)	226, 472, 489, 658
Eco31I	GGTCTC	1 cut(s)	372
EcoRI	GAATTC	2 cut(s)	67, 541
EcoRII	CCWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	234
FaeI	CATG	3 cut(s)	119, 236, 355
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	115, 232, 351
FauNDI	CATATG	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	271, 464
FokI	GGATG	2 cut(s)	272, 563
Fsp4HI	GCNGC	2 cut(s)	271, 464
FspBI	CTAG	7 cut(s)	18, 26, 47, 246, 284, 485, 602
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	2 cut(s)	271, 464
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	3 cut(s)	119, 236, 355
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HinfI	GANTC	3 cut(s)	302, 311, 404
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	7 cut(s)	73, 226, 476, 531, 577, 667, 714
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	44, 288, 618
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	232, 360
HpyF3I	CTNAG	1 cut(s)	711
Hsp92II	CATG	3 cut(s)	119, 236, 355
HspAI	GCGC	1 cut(s)	707
Kzo9I	GATC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	200, 242, 336, 349, 376, 384, 510, 581, 635
Lsp1109I	GCAGC	2 cut(s)	282, 475
LweI	GCATC	3 cut(s)	189, 480, 658
MabI	ACCWGGT	1 cut(s)	362
MaeI	CTAG	7 cut(s)	18, 26, 47, 246, 284, 485, 602
MaeIII	GTNAC	1 cut(s)	639
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	5 cut(s)	175, 213, 489, 506, 645
MluCI	AATT	8 cut(s)	67, 172, 236, 331, 376, 414, 518, 541
MnlI	CCTC	3 cut(s)	200, 659, 720
Mph1103I	ATGCAT	1 cut(s)	234
MseI	TTAA	6 cut(s)	42, 96, 129, 200, 555, 627
MslI	CAYNNNNRTG	2 cut(s)	120, 399
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	1 cut(s)	53
NheI	GCTAGC	2 cut(s)	245, 484
NlaIII	CATG	3 cut(s)	119, 236, 355
NsiI	ATGCAT	1 cut(s)	234
OliI	CACNNNNGTG	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	302, 311, 404
PkrI	GCNGC	2 cut(s)	272, 465
PshAI	GACNNNNGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
RseI	CAYNNNNRTG	2 cut(s)	120, 399
SaqAI	TTAA	6 cut(s)	42, 96, 129, 200, 555, 627
SatI	GCNGC	2 cut(s)	271, 464
Sau3AI	GATC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	364
SexAI	ACCWGGT	1 cut(s)	362
SfaNI	GCATC	3 cut(s)	189, 480, 658
SmiMI	CAYNNNNRTG	2 cut(s)	120, 399
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	8 cut(s)	67, 172, 236, 331, 376, 414, 518, 541
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	7 cut(s)	18, 26, 47, 246, 284, 485, 602
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	8 cut(s)	67, 172, 236, 331, 376, 414, 518, 541
TfiI	GAWTC	3 cut(s)	302, 311, 404
Tru1I	TTAA	6 cut(s)	42, 96, 129, 200, 555, 627
Tru9I	TTAA	6 cut(s)	42, 96, 129, 200, 555, 627
TscAI	CASTG	1 cut(s)	593
TseI	GCWGC	2 cut(s)	270, 463
TspDTI	ATGAA	5 cut(s)	17, 105, 249, 337, 507
TspRI	CASTG	1 cut(s)	593
XapI	RAATTY	3 cut(s)	67, 172, 541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XspI	CTAG	7 cut(s)	18, 26, 47, 246, 284, 485, 602
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.