Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005587

Physical Location & Seq

Genomic Coordinates Reverse (-)

19572972 .. 19575502

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTGGGAAGCCAACACCAAGGCTTCGTCACCTACCATGAACTTTGACCCAAAGGTGTCGAGTCAACACTCGTTCAACATTAAATTGAGGTTGGTCAATGCCCATCATGGCCGGTCAACGCCGAACAAAGCTAATCAATGCTTGGTCAACGCCTACACGGTTGGTCAATGCCCAACTCAAAAAACCAACGCTGACCTACAAAAAAAAAGGTGTCAAATTGCTCTGGACACCCAGAGATTTGCTCTGGACACCCTTCGGCATTCTTCAGTCATTAGCGGCCCGCTGAACTATATACTGCTACCTCCTGGGGCGATCACAGCTCTCTGCCACCTTCACGACACTCCGCCAAAGCACAACAGCACCACCGCCAGTCGAAAGTGTCATCAACTACTAGCCGCAGCAGCCTCCGCCAAGGACAGTCTGCCAGTGGCACCGCTAGGGAGTACCTCCGCCAGCGGCAATGCCGACTTCCTCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.14

Weight (kDa)

9.67

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14190
fragaria_vesca	FvH4_4g12861 FvH4_4g12861
malus_domestica	MD04G1021700.v1.1
prunus_persica	Prupe.1G171300_v2.0.a1 Prupe.1G171300_v2.0.a1
pyrus_communis	pycom04g01780 pycom07g00080
rosa_chinensis	RchiOBHm_Chr4g0412521
rosa_laevigata	RLG00000008282 RLG00000008292
rosa_multiflora	Rmu_sc0000950.1_g000014 Rmu_sc0000987.1_g000016 Rmu_sc0005941.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043460 Rroxscaffold_2G00094110 Rroxscaffold_4G00290720 Rroxscaffold_5G00347880 Rroxscaffold_5G00356740
rosa_rugosa	Rorug04G0103000 Rorug04G0103000 Rorug04G0103100 Rorug04G0103200
rosa_samantha	Rh4AG173700 Rh4BG173200 Rh4CG184700 Rh4DG169200
rosa_wichuraiana	Rw4G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	445
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	131, 320
AluI	AGCT	2 cut(s)	131, 320
AoxI	GGCC	2 cut(s)	109, 277
ApeKI	GCWGC	2 cut(s)	398, 401
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	410, 413
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	306
BfaI	CTAG	3 cut(s)	392, 437, 478
BisI	GCNGC	5 cut(s)	277, 396, 399, 402, 457
BlsI	GCNGC	5 cut(s)	278, 397, 400, 403, 458
Bme1390I	CCNGG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BsaJI	CCNNGG	3 cut(s)	18, 305, 411
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	369, 425
Bse3DI	GCAATG	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	18, 305, 411
BseMI	GCAATG	1 cut(s)	466
BseNI	ACTGG	2 cut(s)	369, 425
BseXI	GCAGC	2 cut(s)	410, 413
BshFI	GGCC	2 cut(s)	111, 279
BshNI	GGYRCC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	111, 279
Bsp143I	GATC	1 cut(s)	312
BspANI	GGCC	2 cut(s)	111, 279
BspLI	GGNNCC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	369, 425
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	3 cut(s)	18, 305, 411
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	18, 411
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	160, 419
BstC8I	GCNNGC	2 cut(s)	281, 454
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 401, 407
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	410, 413
BsuRI	GGCC	2 cut(s)	111, 279
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	281, 454
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	2 cut(s)	37, 107
CviJI	RGCY	8 cut(s)	11, 23, 111, 131, 279, 320, 395, 404
CviKI_1	RGCY	8 cut(s)	11, 23, 111, 131, 279, 320, 395, 404
CviQI	GTAC	1 cut(s)	444
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	109
EciI	GGCGGA	3 cut(s)	333, 397, 439
Eco130I	CCWWGG	2 cut(s)	18, 411
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	18, 411
ErhI	CCWWGG	2 cut(s)	18, 411
FaeI	CATG	2 cut(s)	40, 110
FaiI	YATR	4 cut(s)	38, 108, 291, 293
FatI	CATG	2 cut(s)	36, 106
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	277, 396, 399, 402, 457
Fsp4HI	GCNGC	5 cut(s)	277, 396, 399, 402, 457
FspBI	CTAG	3 cut(s)	392, 437, 478
GluI	GCNGC	5 cut(s)	277, 396, 399, 402, 457
HaeIII	GGCC	2 cut(s)	111, 279
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	40, 110
HincII	GTYRAC	3 cut(s)	65, 117, 148
HindII	GTYRAC	3 cut(s)	65, 117, 148
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	3 cut(s)	65, 117, 148
Hpy188III	TCNNGA	3 cut(s)	224, 245, 335
Hpy8I	GTNNAC	3 cut(s)	65, 117, 148
HpyAV	CCTTC	2 cut(s)	263, 341
HpyCH4III	ACNGT	2 cut(s)	160, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 401, 407
Hsp92II	CATG	2 cut(s)	40, 110
Kzo9I	GATC	1 cut(s)	312
LpnPI	CCDG	9 cut(s)	125, 209, 230, 245, 291, 318, 382, 438, 466
Lsp1109I	GCAGC	2 cut(s)	410, 413
MaeI	CTAG	3 cut(s)	392, 437, 478
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	1 cut(s)	255
MluCI	AATT	2 cut(s)	83, 216
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	81, 312, 415, 457
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	283, 456
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	317, 401, 407
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	2 cut(s)	40, 110
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	259
PkrI	GCNGC	5 cut(s)	278, 397, 400, 403, 458
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	278
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	5 cut(s)	277, 396, 399, 402, 457
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	83, 216
SspMI	CTAG	3 cut(s)	392, 437, 478
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	18, 411
TaaI	ACNGT	2 cut(s)	160, 419
TaqI	TCGA	2 cut(s)	59, 373
TasI	AATT	2 cut(s)	83, 216
TauI	GCSGC	3 cut(s)	279, 398, 459
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	2 cut(s)	398, 401
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	432
XspI	CTAG	3 cut(s)	392, 437, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.