AT4G22680
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005146
Physical Location & Seq
Reverse (-)
11922340 .. 11924230
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22680.1

Sequence Viewer

Length: 801 bp
ATGGGGAGACAGCCATGCTGTGACAAGCTAGGGGTGAAGAAAGGGCCGTGGACGGTGGAGGAAGATAAGAAGCTTATAAACTTCATACTAACCAATGGCCATTGTTGCTGGCGTGCTTTGCCGAAGCTGGCCGGTCTCCGTCGCTGTGGAAAGAGCTGCCGCCTCCGGTGGACTAACTATCTCCGGCCTGACTTAAAACGAGGCCTTCTCTCGCATGATGAAGAACAACTTGTCATAGATCTTCATGCTAATCTCGGCAATAAGTGGTCTAAGATAGCTTCAAGATTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGAATACTCATATCAAGAAGAAACTTCTTAAGATGGGAATCGATCCTATGACCCATCAACCCCTAAATCAAGAACCTTCTAATATCGATAATTCCAAAACCATTCCGTCCAATCCAGACGATGTCTCAGTGGAACCAAAGACAACTAACACGAAATACGTGGAGATAAGTGTCACGACAACAGAAGAAGAAAGTAGTAGCACGGTTACTGATCAAAACAGTTCGATGGATAATGAAAATCATCTAATTGACAACATTTATGATGATGATGAATTGTTTAGTTACTTATGGTCCGACGAAACTACTAAAGATGAGGCCTCTTGGAGTGATAGTAACTTTGGTGTTGGTGGAACATTATATGACCACAATATCTCCGGCGCCGATGCAGATTTTCCGATATGGTCACCGGAAAGAATCAATGACGAGAAGATGTTTTTGGATTATTGTCAAGACTTTGGTGTTCATGATTTTGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

266

Amino Acids

30.41

Weight (kDa)

5.2

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 68 5.3e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 2.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 698
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 2 cut(s) 97, 129
AcyI GRCGYC 1 cut(s) 699
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 282
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 5 cut(s) 28, 73, 127, 156, 278
AluI AGCT 5 cut(s) 28, 73, 127, 156, 278
Alw26I GTCTC 2 cut(s) 140, 451
AlwI GGATC 1 cut(s) 359
AoxI GGCC 6 cut(s) 44, 97, 129, 185, 202, 636
ApeKI GCWGC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 2 cut(s) 44, 612
AsuHPI GGTGA 2 cut(s) 46, 717
AvaII GGWCC 1 cut(s) 612
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 698
BbvI GCAGC 1 cut(s) 143
BccI CCATC 3 cut(s) 349, 384, 541
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 532
BcoDI GTCTC 2 cut(s) 140, 451
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 702
BfrI CTTAAG 1 cut(s) 350
BglII AGATCT 1 cut(s) 238
BisI GCNGC 2 cut(s) 157, 160
BlsI GCNGC 2 cut(s) 158, 161
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 2 cut(s) 44, 612
BmiI GGNNCC 2 cut(s) 456, 700
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 192, 224
Bsa29I ATCGAT 2 cut(s) 363, 408
BsaAI YACGTR 1 cut(s) 481
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 2 cut(s) 165, 727
BsaXI ACNNNNNCTCC 4 cut(s) 637, 667, 677, 707
Bse118I RCCGGY 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 2 cut(s) 363, 408
BseDI CCNNGG 1 cut(s) 47
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 6 cut(s) 46, 99, 131, 187, 204, 638
BshNI GGYRCC 1 cut(s) 698
BshVI ATCGAT 2 cut(s) 363, 408
BsiSI CCGG 5 cut(s) 132, 166, 184, 696, 728
BsmAI GTCTC 2 cut(s) 140, 451
BsnI GGCC 6 cut(s) 46, 99, 131, 187, 204, 638
Bso31I GGTCTC 1 cut(s) 140
Bsp143I GATC 3 cut(s) 238, 364, 532
BspACI CCGC 1 cut(s) 160
BspANI GGCC 6 cut(s) 46, 99, 131, 187, 204, 638
BspCNI CTCAG 1 cut(s) 461
BspDI ATCGAT 2 cut(s) 363, 408
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 456, 700
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 698
BspTI CTTAAG 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 3 cut(s) 238, 364, 532
BssNI GRCGYC 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 55, 526, 542
BstACI GRCGYC 1 cut(s) 699
BstAFI CTTAAG 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 3 cut(s) 110, 114, 129
BstDEI CTNAG 2 cut(s) 270, 448
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 723
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 3 cut(s) 241, 367, 535
BstMAI GTCTC 2 cut(s) 140, 451
BstMBI GATC 3 cut(s) 238, 364, 532
BstMWI GCNNNNNNNGC 2 cut(s) 105, 118
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 723
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
Bsu15I ATCGAT 2 cut(s) 363, 408
BsuRI GGCC 6 cut(s) 46, 99, 131, 187, 204, 638
BsuTUI ATCGAT 2 cut(s) 363, 408
BtgI CCRYGG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 3 cut(s) 110, 114, 129
CciI TCATGA 1 cut(s) 784
CfoI GCGC 1 cut(s) 701
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 44, 612
ClaI ATCGAT 2 cut(s) 363, 408
CviAII CATG 4 cut(s) 15, 215, 245, 785
DdeI CTNAG 2 cut(s) 270, 448
DinI GGCGCC 1 cut(s) 700
DpnI GATC 3 cut(s) 240, 366, 534
DpnII GATC 3 cut(s) 238, 364, 532
EaeI YGGCCR 2 cut(s) 97, 129
Eco147I AGGCCT 2 cut(s) 204, 638
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 612
Eco91I GGTNACC 1 cut(s) 723
EcoO65I GGTNACC 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 289
EgeI GGCGCC 1 cut(s) 700
EheI GGCGCC 1 cut(s) 700
FaeI CATG 4 cut(s) 18, 218, 248, 788
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 4 cut(s) 14, 214, 244, 784
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 157, 160
Fsp4HI GCNGC 2 cut(s) 157, 160
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 700
GluI GCNGC 2 cut(s) 157, 160
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 6 cut(s) 46, 99, 131, 187, 204, 638
HapII CCGG 5 cut(s) 132, 166, 184, 696, 728
HhaI GCGC 1 cut(s) 701
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 4 cut(s) 18, 218, 248, 788
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 360, 735
HpaII CCGG 5 cut(s) 132, 166, 184, 696, 728
HphI GGTGA 2 cut(s) 46, 717
Hpy166II GTNNAC 2 cut(s) 51, 171
Hpy188I TCNGA 2 cut(s) 616, 717
Hpy188III TCNNGA 7 cut(s) 282, 337, 392, 437, 496, 770, 785
Hpy8I GTNNAC 2 cut(s) 51, 171
Hpy99I CGWCG 2 cut(s) 144, 620
HpyAV CCTTC 2 cut(s) 215, 408
HpyCH4III ACNGT 3 cut(s) 55, 526, 542
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 118
HpyF3I CTNAG 2 cut(s) 270, 448
HpySE526I ACGT 1 cut(s) 480
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 4 cut(s) 18, 218, 248, 788
HspAI GCGC 1 cut(s) 699
KasI GGCGCC 1 cut(s) 698
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 3 cut(s) 238, 364, 532
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 694
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 6 cut(s) 20, 493, 526, 602, 653, 723
MalI GATC 3 cut(s) 240, 366, 534
MboI GATC 3 cut(s) 238, 364, 532
MboII GAAGA 9 cut(s) 49, 74, 233, 233, 306, 352, 518, 521, 760
MflI RGATCY 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 412, 567, 593
MluNI TGGCCA 1 cut(s) 99
Mly113I GGCGCC 1 cut(s) 699
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 5 cut(s) 52, 173, 194, 628, 649
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 194, 351
Msp20I TGGCCA 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 5 cut(s) 132, 166, 184, 696, 728
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 105, 118
NarI GGCGCC 1 cut(s) 699
NdeII GATC 3 cut(s) 238, 364, 532
NlaIII CATG 4 cut(s) 18, 218, 248, 788
NlaIV GGNNCC 2 cut(s) 456, 700
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 3 cut(s) 20, 493, 723
PagI TCATGA 1 cut(s) 784
PceI AGGCCT 2 cut(s) 204, 638
PfeI GAWTC 2 cut(s) 360, 735
PflFI GACNNNGTC 1 cut(s) 443
PkrI GCNGC 2 cut(s) 158, 161
PluTI GGCGCC 1 cut(s) 702
Ppu21I YACGTR 1 cut(s) 481
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 723
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 456, 700
PspPI GGNCC 2 cut(s) 44, 612
PsuI RGATCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 194, 351
SatI GCNGC 2 cut(s) 157, 160
Sau3AI GATC 3 cut(s) 238, 364, 532
Sau96I GGNCC 2 cut(s) 44, 612
ScrFI CCNGG 1 cut(s) 291
SetI ASST 8 cut(s) 30, 75, 129, 158, 280, 292, 400, 483
SfaNI GCATC 1 cut(s) 694
SfoI GGCGCC 1 cut(s) 700
SinI GGWCC 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 3 cut(s) 412, 567, 593
SseBI AGGCCT 2 cut(s) 204, 638
SsiI CCGC 1 cut(s) 160
SspDI GGCGCC 1 cut(s) 698
SspMI CTAG 1 cut(s) 29
StuI AGGCCT 2 cut(s) 204, 638
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 55, 526, 542
TaiI ACGT 1 cut(s) 483
TaqI TCGA 3 cut(s) 363, 408, 545
TasI AATT 3 cut(s) 412, 567, 593
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 2 cut(s) 360, 735
Tru1I TTAA 2 cut(s) 194, 351
Tru9I TTAA 2 cut(s) 194, 351
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 3 cut(s) 20, 493, 723
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 3 cut(s) 20, 493, 723
TspDTI ATGAA 6 cut(s) 73, 233, 234, 570, 606, 773
TspGWI ACGGA 2 cut(s) 128, 417
TspRI CASTG 1 cut(s) 456
Tth111I GACNNNGTC 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 612
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.