Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005146

Physical Location & Seq

Genomic Coordinates Forward (+)

9126002 .. 9128031

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGACGGCAACCTTGTTGTGACAAACTTGGGGTAAAGAAAGGGCCATGGACAGCTGAGGAGGACAAGAAGCTCATCAACTTTATTCTCACTAATGGCCAGTGTTGCTGGAGAGCTGTGCCTAAGCTCGCCGGGCTTCGCCGGTGCGGCAAGAGTTGCAGACTCCGTTGGACCAACTATCTCCGGCCCGACTTGAAGAGAGGCCTCCTTACTGAAGCTGAAGAACAGTTGGTTATTGATCTCCATGCTCGTCTTGGAAATAGGTGGTCCAAGATTGCAGCCAGATTGCCAGGGAGGACTGATAATGAGATCAAGAATCATTGGAACACCCATATCAAGAAAAAGCTGCTTAGGATGGGAATTGATCCTGTCACGCATGAACCACTCCACAAAGAAGATCAGTTGGGGTGCAGCAAGGAAACCAACTCATCATCATCATCCCATGATCATAAAAATAACTTGCCAGATCATCAATCTACAAATGATCATAGCATGGTAGTCAACTCAGCCGGATCGGAGGACATGAACTCATCAAGCTCACCACCAGAAAACTCTTCCTCCGGCGACGAATCAACGCTGCTAGATAGCATTTGCAACGACGAGTCATTGATGAAGAACCTGTGGGTGGATGAAACTCCTCTGATTGATGCATTGTGGAGCAACAATGGTCAAGTAGTAGCAGATCACGGAGGCAACGAGATTAATATTGAGAATGGCATGGGGTTGCAATCTTGGGAGGACAATTGTGCATGGCTTTTGGATTGCCAGGACTTTGGTGTTCATGATTTTGGCATGGATTATTGCTTCAACGACGTCGAATTAAACGGTCTCAGCACATTAGAGATGGGGGATAAATTAAGCACTACTATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

292

Amino Acids

32.59

Weight (kDa)

5.37

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22680
fragaria_vesca	FvH4_5g00480 FvH4_7g27910
malus_domestica	MD00G1104700.v1.1 MD04G1080600.v1.1 MD07G1256200.v1.1
prunus_persica	Prupe.2G280100_v2.0.a1 Prupe.5G077500_v2.0.a1
pyrus_communis	pycom01g19580 pycom04g07290 pycom07g22910
rosa_chinensis	RchiOBHm_Chr1g0374861 RchiOBHm_Chr7g0202031
rosa_laevigata	RLG00000003632 RLG00000026711
rosa_multiflora	Rmu_sc0004947.1_g000027 Rmu_sc0006592.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254920 Rroxscaffold_4G00283220
rosa_rugosa	Rorug01G0385400 Rorug07G0067400
rosa_samantha	Rh1AG397000 Rh1BG360800 Rh1CG374500 Rh7AG194700 Rh7BG196200 Rh7CG206000 Rh7DG201400
rosa_wichuraiana	Rw1G035200 Rw7G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	816
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	359, 520
AcoI	YGGCCR	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	234, 240
AcyI	GRCGYC	1 cut(s)	813
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgsI	TTSAA	2 cut(s)	196, 808
AjnI	CCWGG	2 cut(s)	289, 765
AluBI	AGCT	7 cut(s)	56, 73, 116, 127, 218, 346, 537
AluI	AGCT	7 cut(s)	56, 73, 116, 127, 218, 346, 537
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	2 cut(s)	359, 520
AoxI	GGCC	4 cut(s)	44, 97, 185, 202
ApeKI	GCWGC	4 cut(s)	278, 346, 411, 577
AseI	ATTAAT	1 cut(s)	702
AspS9I	GGNCC	4 cut(s)	44, 171, 186, 267
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	531
AvaII	GGWCC	2 cut(s)	171, 267
BalI	TGGCCA	1 cut(s)	99
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	4 cut(s)	290, 333, 423, 564
BccI	CCATC	2 cut(s)	349, 838
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	291, 767
BclI	TGATCA	2 cut(s)	445, 484
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	833
BfaI	CTAG	1 cut(s)	581
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	5 cut(s)	148, 279, 347, 412, 578
BlsI	GCNGC	5 cut(s)	149, 280, 348, 413, 579
Bme1390I	CCNGG	3 cut(s)	133, 291, 767
Bme18I	GGWCC	2 cut(s)	171, 267
BmgT120I	GGNCC	4 cut(s)	44, 171, 186, 267
BmrFI	CCNGG	3 cut(s)	133, 291, 767
BmsI	GCATC	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	3 cut(s)	57, 123, 350
BpuMI	CCSGG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	47, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	291, 767
BseDI	CCNNGG	2 cut(s)	47, 290
BseGI	GGATG	3 cut(s)	360, 437, 634
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMII	CTCAG	3 cut(s)	48, 519, 844
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	74, 627
BseXI	GCAGC	4 cut(s)	290, 333, 423, 564
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	4 cut(s)	46, 99, 187, 204
BsiSI	CCGG	5 cut(s)	132, 142, 184, 510, 561
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	46, 99, 187, 204
Bso31I	GGTCTC	1 cut(s)	833
Bsp143I	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	4 cut(s)	46, 99, 187, 204
BspCNI	CTCAG	3 cut(s)	49, 518, 843
BspHI	TCATGA	1 cut(s)	781
BspPI	GGATC	2 cut(s)	359, 520
BspTNI	GGTCTC	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	47, 290
BssMI	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
BssNI	GRCGYC	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	291, 767
Bst4CI	ACNGT	2 cut(s)	228, 827
Bst6I	CTCTTC	2 cut(s)	191, 559
BstACI	GRCGYC	1 cut(s)	813
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	5 cut(s)	57, 123, 350, 505, 830
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	360, 437, 634
BstKTI	GATC	9 cut(s)	241, 312, 367, 400, 448, 469, 487, 515, 685
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 133, 147, 156
BstNI	CCWGG	2 cut(s)	291, 767
BstSCI	CCNGG	3 cut(s)	131, 289, 765
BstV1I	GCAGC	4 cut(s)	290, 333, 423, 564
BstXI	CCANNNNNNTGG	1 cut(s)	773
BsuRI	GGCC	4 cut(s)	46, 99, 187, 204
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	360, 437, 634
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	1 cut(s)	781
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	4 cut(s)	44, 171, 186, 267
DdeI	CTNAG	5 cut(s)	57, 123, 350, 505, 830
DpnI	GATC	9 cut(s)	240, 311, 366, 399, 447, 468, 486, 514, 684
DpnII	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	191, 559
EarI	CTCTTC	2 cut(s)	191, 559
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	833
Eco47I	GGWCC	2 cut(s)	171, 267
Eco57I	CTGAAG	2 cut(s)	234, 240
EcoRII	CCWGG	2 cut(s)	289, 765
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	47
FaqI	GGGAC	1 cut(s)	18
FbaI	TGATCA	2 cut(s)	445, 484
Fnu4HI	GCNGC	5 cut(s)	148, 279, 347, 412, 578
FokI	GGATG	3 cut(s)	367, 424, 641
Fsp4HI	GCNGC	5 cut(s)	148, 279, 347, 412, 578
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	5 cut(s)	148, 279, 347, 412, 578
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	4 cut(s)	46, 99, 187, 204
HapII	CCGG	5 cut(s)	132, 142, 184, 510, 561
Hin1I	GRCGYC	1 cut(s)	813
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	4 cut(s)	162, 316, 569, 602
HpaII	CCGG	5 cut(s)	132, 142, 184, 510, 561
HphI	GGTGA	1 cut(s)	531
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	517, 642
Hpy188III	TCNNGA	3 cut(s)	313, 337, 782
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	4 cut(s)	569, 602, 815, 818
HpyCH4III	ACNGT	2 cut(s)	228, 827
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	7 cut(s)	159, 278, 411, 594, 650, 727, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 133, 147, 156
HpyF3I	CTNAG	5 cut(s)	57, 123, 350, 505, 830
HpySE526I	ACGT	1 cut(s)	813
Hsp92I	GRCGYC	1 cut(s)	813
Ksp22I	TGATCA	2 cut(s)	445, 484
Kzo9I	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
LmnI	GCTCC	1 cut(s)	657
Lsp1109I	GCAGC	4 cut(s)	290, 333, 423, 564
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	2 cut(s)	20, 370
MalI	GATC	9 cut(s)	240, 311, 366, 399, 447, 468, 486, 514, 684
MboI	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
MboII	GAAGA	5 cut(s)	208, 233, 407, 546, 625
MfeI	CAATTG	1 cut(s)	742
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	5 cut(s)	360, 742, 818, 854, 871
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	156, 611
MmeI	TCCRAC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	652
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	702, 821, 857, 874
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	5 cut(s)	132, 142, 184, 510, 561
MspR9I	CCNGG	3 cut(s)	133, 291, 767
MunI	CAATTG	1 cut(s)	742
MvaI	CCWGG	2 cut(s)	291, 767
MwoI	GCNNNNNNNGC	4 cut(s)	105, 133, 147, 156
NciI	CCSGG	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
NmuCI	GTSAC	2 cut(s)	20, 370
NsiI	ATGCAT	1 cut(s)	652
PagI	TCATGA	1 cut(s)	781
PceI	AGGCCT	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	316, 569
PkrI	GCNGC	5 cut(s)	149, 280, 348, 413, 579
PleI	GAGTC	2 cut(s)	156, 610
PpsI	GAGTC	2 cut(s)	156, 610
PshBI	ATTAAT	1 cut(s)	702
Psp6I	CCWGG	2 cut(s)	289, 765
PspGI	CCWGG	2 cut(s)	289, 765
PspPI	GGNCC	4 cut(s)	44, 171, 186, 267
PvuII	CAGCTG	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	702, 821, 857, 874
SatI	GCNGC	5 cut(s)	148, 279, 347, 412, 578
Sau3AI	GATC	9 cut(s)	238, 309, 364, 397, 445, 466, 484, 512, 682
Sau96I	GGNCC	4 cut(s)	44, 171, 186, 267
SchI	GAGTC	2 cut(s)	156, 611
ScrFI	CCNGG	3 cut(s)	133, 291, 767
SfaNI	GCATC	1 cut(s)	637
SgrAI	CRCCGGYG	1 cut(s)	141
SinI	GGWCC	2 cut(s)	171, 267
Sse9I	AATT	5 cut(s)	360, 742, 818, 854, 871
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	1 cut(s)	581
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	131, 289, 765
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	228, 827
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	1 cut(s)	816
TasI	AATT	5 cut(s)	360, 742, 818, 854, 871
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	316, 569
Tru1I	TTAA	4 cut(s)	702, 821, 857, 874
Tru9I	TTAA	4 cut(s)	702, 821, 857, 874
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	2 cut(s)	20, 370
TseI	GCWGC	4 cut(s)	278, 346, 411, 577
Tsp45I	GTSAC	2 cut(s)	20, 370
TspDTI	ATGAA	5 cut(s)	393, 539, 626, 645, 770
TspGWI	ACGGA	2 cut(s)	155, 702
TspRI	CASTG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	171, 267
VspI	ATTAAT	1 cut(s)	702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	581
ZraI	GACGTC	1 cut(s)	814
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.