Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004947.1

Orthogroup ID

OG0005146

Physical Location & Seq

Genomic Coordinates Forward (+)

123518 .. 124387

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004947.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgggcaggcaaccttgttgtgacaagcttggcgtcaagaaaggtccatggacagccgaggaagacaagaaactagtgaacttcatcctcactcatggccaatgctgctggcgcgccgtccccaagctcgcgggtctgcgccgctgcggcaagagctgccgcctccgctggactaactatctccggccggacttgaagcgagggctactcaatgaagctgaggagcagcttgttattgacctccatgctagtcttggcaataggtggtctaaaattgcagcaagactgcctggaagaacagacaatgagatcaagaatcactggaatacacacattaagaaaaaacttatcaagatggggattgatccaattactcatgcgcctctccaaaaacaagtcactacaaccccacaagaaacgccttgtgaagccaatattcaacaaagtgtgaacatcccggagcatggagtctccagcaacgaaaatggcagctctgcaactgagaattcctcaagcaatgaagctcagtcactaattgaggtcaatgccaatggtgacgatgaccctttggtgaattacatattatccgatacatttctccaggattggtcatggaattttccggctgtggaagacaattacagtgatcttggcttgtcttcaacttcatcagaggatagctcagcttggtttatggactgcaaggattttggggttgaggatttcgagcttggaaattgtatcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

249

Amino Acids

27.89

Weight (kDa)

5.42

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22680
fragaria_vesca	FvH4_5g00480 FvH4_7g27910
malus_domestica	MD00G1104700.v1.1 MD04G1080600.v1.1 MD07G1256200.v1.1
prunus_persica	Prupe.2G280100_v2.0.a1 Prupe.5G077500_v2.0.a1
pyrus_communis	pycom01g19580 pycom04g07290 pycom07g22910
rosa_chinensis	RchiOBHm_Chr1g0374861 RchiOBHm_Chr7g0202031
rosa_laevigata	RLG00000003632 RLG00000026711
rosa_multiflora	Rmu_sc0004947.1_g000027 Rmu_sc0006592.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254920 Rroxscaffold_4G00283220
rosa_rugosa	Rorug01G0385400 Rorug07G0067400
rosa_samantha	Rh1AG397000 Rh1BG360800 Rh1CG374500 Rh7AG194700 Rh7BG196200 Rh7CG206000 Rh7DG201400
rosa_wichuraiana	Rw1G035200 Rw7G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	114, 131
AciI	CCGC	5 cut(s)	131, 142, 147, 160, 166
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	2 cut(s)	97, 185
AcsI	RAATTY	2 cut(s)	505, 616
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	196, 440, 663
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	289, 600
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	2 cut(s)	97, 185
ApeKI	GCWGC	6 cut(s)	105, 144, 156, 226, 278, 489
ApoI	RAATTY	2 cut(s)	505, 616
AscI	GGCGCGCC	1 cut(s)	112
AspLEI	GCGC	4 cut(s)	114, 116, 141, 382
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	2 cut(s)	566, 583
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	99
BbsI	GAAGAC	3 cut(s)	69, 639, 651
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	291, 602
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	475
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	2 cut(s)	74, 249
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
BlpI	GCTNAGC	1 cut(s)	682
BlsI	GCNGC	9 cut(s)	107, 143, 146, 149, 158, 161, 228, 280, 491
Bme1390I	CCNGG	3 cut(s)	291, 458, 602
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	291, 458, 602
BpiI	GAAGAC	3 cut(s)	69, 639, 651
BplI	GAGNNNNNCTC	6 cut(s)	192, 224, 494, 526, 665, 697
BpmI	CTGGAG	2 cut(s)	457, 584
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	682
BpuEI	CTTGAG	1 cut(s)	496
BpuMI	CCSGG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	47, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	291, 602
BseDI	CCNNGG	2 cut(s)	47, 57
BseGI	GGATG	2 cut(s)	84, 453
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	210, 492, 539, 696
BseNI	ACTGG	1 cut(s)	326
BsePI	GCGCGC	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
Bsh1236I	CGCG	2 cut(s)	114, 131
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	99, 187
BsiEI	CGRYCG	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	184, 188, 458, 623
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	99, 187
Bsp143I	GATC	3 cut(s)	309, 364, 646
Bsp1720I	GCTNAGC	1 cut(s)	682
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	131, 142, 147, 160, 166
BspANI	GGCC	2 cut(s)	99, 187
BspCNI	CTCAG	4 cut(s)	211, 493, 538, 695
BspFNI	CGCG	2 cut(s)	114, 131
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	47, 57
BssHII	GCGCGC	1 cut(s)	112
BssMI	GATC	3 cut(s)	309, 364, 646
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	291, 602
Bst4CI	ACNGT	1 cut(s)	644
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	8, 110, 114, 129
BstDEI	CTNAG	4 cut(s)	219, 501, 525, 682
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	84, 453
BstFNI	CGCG	2 cut(s)	114, 131
BstHHI	GCGC	4 cut(s)	114, 116, 141, 382
BstKTI	GATC	3 cut(s)	312, 367, 649
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	3 cut(s)	309, 364, 646
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 111, 147, 153, 156, 165
BstNI	CCWGG	2 cut(s)	291, 602
BstSCI	CCNGG	3 cut(s)	289, 456, 600
BstUI	CGCG	2 cut(s)	114, 131
BstV1I	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
BstV2I	GAAGAC	3 cut(s)	69, 639, 651
BstZI	CGGCCG	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	99, 187
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	84, 453
BtsIMutI	CAGTG	2 cut(s)	319, 649
Cac8I	GCNNGC	4 cut(s)	8, 110, 114, 129
CfoI	GCGC	4 cut(s)	114, 116, 141, 382
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	22
CviAII	CATG	6 cut(s)	48, 95, 245, 377, 464, 612
DdeI	CTNAG	4 cut(s)	219, 501, 525, 682
DpnI	GATC	3 cut(s)	311, 366, 648
DpnII	GATC	3 cut(s)	309, 364, 646
EaeI	YGGCCR	2 cut(s)	97, 185
EagI	CGGCCG	1 cut(s)	185
EclXI	CGGCCG	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	289, 600
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	6 cut(s)	51, 98, 248, 380, 467, 615
FaiI	YATR	8 cut(s)	49, 96, 246, 378, 465, 581, 613, 695
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	47, 94, 244, 376, 463, 611
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
FokI	GGATG	2 cut(s)	71, 440
Fsp4HI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
FspBI	CTAG	2 cut(s)	74, 249
GlaI	GCGC	4 cut(s)	113, 115, 140, 381
GluI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
GsuI	CTGGAG	2 cut(s)	457, 584
HaeIII	GGCC	2 cut(s)	99, 187
HapII	CCGG	4 cut(s)	184, 188, 458, 623
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	4 cut(s)	114, 116, 141, 382
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	6 cut(s)	51, 98, 248, 380, 467, 615
Hin6I	GCGC	4 cut(s)	112, 114, 139, 380
HinP1I	GCGC	4 cut(s)	112, 114, 139, 380
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	316, 468
HpaII	CCGG	4 cut(s)	184, 188, 458, 623
HphI	GGTGA	2 cut(s)	566, 583
Hpy166II	GTNNAC	2 cut(s)	79, 451
Hpy188I	TCNGA	2 cut(s)	589, 673
Hpy188III	TCNNGA	3 cut(s)	37, 313, 352
Hpy8I	GTNNAC	2 cut(s)	79, 451
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4V	TGCA	3 cut(s)	278, 497, 702
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 111, 147, 153, 156, 165
HpyF3I	CTNAG	4 cut(s)	219, 501, 525, 682
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	6 cut(s)	51, 98, 248, 380, 467, 615
HspAI	GCGC	4 cut(s)	112, 114, 139, 380
Kzo9I	GATC	3 cut(s)	309, 364, 646
LmnI	GCTCC	2 cut(s)	223, 460
Lsp1109I	GCAGC	6 cut(s)	92, 131, 143, 238, 290, 501
MaeI	CTAG	2 cut(s)	74, 249
MaeIII	GTNAC	4 cut(s)	20, 397, 528, 554
MalI	GATC	3 cut(s)	311, 366, 648
MboI	GATC	3 cut(s)	309, 364, 646
MboII	GAAGA	4 cut(s)	74, 306, 644, 651
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	9 cut(s)	273, 369, 505, 534, 574, 616, 637, 736, 745
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	336, 748
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	144, 168
MspI	CCGG	4 cut(s)	184, 188, 458, 623
MspR9I	CCNGG	3 cut(s)	291, 458, 602
MvaI	CCWGG	2 cut(s)	291, 602
MvnI	CGCG	2 cut(s)	114, 131
MwoI	GCNNNNNNNGC	6 cut(s)	105, 111, 147, 153, 156, 165
NciI	CCSGG	1 cut(s)	458
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	309, 364, 646
NlaIII	CATG	6 cut(s)	51, 98, 248, 380, 467, 615
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	4 cut(s)	20, 397, 528, 554
PalAI	GGCGCGCC	1 cut(s)	112
PauI	GCGCGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	316
PfoI	TCCNGGA	2 cut(s)	456, 600
PkrI	GCNGC	9 cut(s)	107, 143, 146, 149, 158, 161, 228, 280, 491
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	289, 600
PspGI	CCWGG	2 cut(s)	289, 600
PspPI	GGNCC	1 cut(s)	44
PteI	GCGCGC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	336, 748
SatI	GCNGC	9 cut(s)	106, 142, 145, 148, 157, 160, 227, 279, 490
Sau3AI	GATC	3 cut(s)	309, 364, 646
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	3 cut(s)	291, 458, 602
SgsI	GGCGCGCC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	9 cut(s)	273, 369, 505, 534, 574, 616, 637, 736, 745
SsiI	CCGC	5 cut(s)	131, 142, 147, 160, 166
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	2 cut(s)	74, 249
StyD4I	CCNGG	3 cut(s)	289, 456, 600
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	644
TaqI	TCGA	1 cut(s)	726
TasI	AATT	9 cut(s)	273, 369, 505, 534, 574, 616, 637, 736, 745
TauI	GCSGC	3 cut(s)	144, 150, 162
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	2 cut(s)	336, 748
Tru9I	TTAA	2 cut(s)	336, 748
TscAI	CASTG	2 cut(s)	326, 649
TseFI	GTSAC	4 cut(s)	20, 397, 528, 554
TseI	GCWGC	6 cut(s)	105, 144, 156, 226, 278, 489
Tsp45I	GTSAC	4 cut(s)	20, 397, 528, 554
TspDTI	ATGAA	4 cut(s)	73, 228, 534, 657
TspRI	CASTG	2 cut(s)	326, 649
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	505, 616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	74, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.