Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005146

Physical Location & Seq

Genomic Coordinates Forward (+)

27951152 .. 27952733

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G280100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGAAGGCAACCTTGTTGTGACAAGCTTGGTGTGAAGAAAGGGCCATGGACTGCTGAGGAGGACAAGAAATTGGTGAATTTTCTCCTCGCACATGGCCAATGCTGTTGGCGTGCAGTCCCCAAGCTCGCCGGCCTCAGGCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGACTAACTACCTCCGGCCTGACTTGAAAAGAGGCCTCCTTAATGAAGCTGAGGAGCAACTTGTCATTGACCTCCATTCCCGTCTTGGCAATAGGTGGTCTAAAATTGCAGCAGGATTGCCTGGAAGAACTGACAATGAGATCAAGAACCACTGGAACACACACATCAAGAAGAAGCTTATCAAGATGGGCATTGATCCAATCACCCATGAACCTCTATGCAAGCAAGCCACTCCACCAGAAATGCCTTGTAAACCAAACAATCCACCTGCAGATTTAGACATGAATCAGCAGAACGTGAATATCCCAGAACATGGAATCTCTTCTGCAGCTGAAAGTTCCTCAAGCAATGAATCCCAGCCATTGGAGCCTAACCTAAAGAGTGAAGATGACCCGTTGATGAGCTACATATTATCCGATACATTCCTGGAAGATTTGACATGGGATTTTTCAGCCTCATCAGAAGATAGCTCAGCAGCTGATAATCCGGCGGAGGATAATAGCTTAGCATGGTTCTTGGACTGCAAGGATTTTGGAGTTGAAGATTTCGAGCTCGGGTGTATCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

246

Amino Acids

27.46

Weight (kDa)

5.32

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22680
fragaria_vesca	FvH4_5g00480 FvH4_7g27910
malus_domestica	MD00G1104700.v1.1 MD04G1080600.v1.1 MD07G1256200.v1.1
prunus_persica	Prupe.2G280100_v2.0.a1 Prupe.5G077500_v2.0.a1
pyrus_communis	pycom01g19580 pycom04g07290 pycom07g22910
rosa_chinensis	RchiOBHm_Chr1g0374861 RchiOBHm_Chr7g0202031
rosa_laevigata	RLG00000003632 RLG00000026711
rosa_multiflora	Rmu_sc0004947.1_g000027 Rmu_sc0006592.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254920 Rroxscaffold_4G00283220
rosa_rugosa	Rorug01G0385400 Rorug07G0067400
rosa_samantha	Rh1AG397000 Rh1BG360800 Rh1CG374500 Rh7AG194700 Rh7BG196200 Rh7CG206000 Rh7DG201400
rosa_wichuraiana	Rw1G035200 Rw7G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	2 cut(s)	482, 532
AciI	CCGC	3 cut(s)	147, 160, 659
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	138, 482, 532
AgsI	TTSAA	2 cut(s)	196, 710
AjnI	CCWGG	2 cut(s)	289, 594
Alw21I	GWGCWC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	2 cut(s)	144, 647
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	5 cut(s)	44, 97, 133, 185, 202
ApeKI	GCWGC	5 cut(s)	144, 156, 278, 497, 644
ApoI	RAATTY	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	88, 364
AvaI	CYCGRG	1 cut(s)	722
AxyI	CCTNAGG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	2 cut(s)	57, 219
BbvI	GCAGC	5 cut(s)	131, 143, 290, 509, 656
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	2 cut(s)	291, 596
BfmI	CTRYAG	2 cut(s)	438, 495
BfoI	RGCGCY	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	7 cut(s)	145, 148, 157, 160, 279, 498, 645
BlpI	GCTNAGC	2 cut(s)	640, 673
BlsI	GCNGC	7 cut(s)	146, 149, 158, 161, 280, 499, 646
Bme1390I	CCNGG	2 cut(s)	291, 596
BmeT110I	CYCGRG	1 cut(s)	722
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	2 cut(s)	291, 596
Bpu10I	CCTNAGC	2 cut(s)	57, 219
Bpu1102I	GCTNAGC	2 cut(s)	640, 673
BpuEI	CTTGAG	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 482, 532
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	291, 596
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	138, 482, 532
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	48, 151, 210, 654
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	74, 77, 236
BseXI	GCAGC	5 cut(s)	131, 143, 290, 509, 656
BseYI	CCCAGC	1 cut(s)	525
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	46, 99, 135, 187, 204
BsiHKAI	GWGCWC	1 cut(s)	723
BsiHKCI	CYCGRG	1 cut(s)	722
BsiSI	CCGG	4 cut(s)	132, 166, 184, 656
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	3 cut(s)	138, 482, 532
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	5 cut(s)	46, 99, 135, 187, 204
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	2 cut(s)	309, 364
Bsp1720I	GCTNAGC	2 cut(s)	640, 673
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	147, 160, 659
BspANI	GGCC	5 cut(s)	46, 99, 135, 187, 204
BspCNI	CTCAG	4 cut(s)	49, 150, 211, 653
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	2 cut(s)	442, 499
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	309, 364
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	291, 596
Bst6I	CTCTTC	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	5 cut(s)	114, 129, 133, 392, 396
BstDEI	CTNAG	5 cut(s)	57, 137, 219, 640, 673
BstDSI	CCRYGG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	312, 367
BstMBI	GATC	2 cut(s)	309, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 153, 156, 535
BstNI	CCWGG	2 cut(s)	291, 596
BstSCI	CCNGG	2 cut(s)	289, 594
BstSFI	CTRYAG	2 cut(s)	438, 495
BstV1I	GCAGC	5 cut(s)	131, 143, 290, 509, 656
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	5 cut(s)	46, 99, 135, 187, 204
BtgI	CCRYGG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	5 cut(s)	114, 129, 133, 392, 396
CaiI	CAGNNNCTG	2 cut(s)	144, 647
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	7 cut(s)	48, 95, 377, 451, 482, 609, 678
DdeI	CTNAG	5 cut(s)	57, 137, 219, 640, 673
DpnI	GATC	2 cut(s)	311, 366
DpnII	GATC	2 cut(s)	309, 364
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	674
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	723
Eco53kI	GAGCTC	1 cut(s)	721
Eco81I	CCTNAGG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	722
EcoICRI	GAGCTC	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	289, 594
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	7 cut(s)	51, 98, 380, 454, 485, 612, 681
FaiI	YATR	9 cut(s)	49, 96, 378, 388, 452, 483, 578, 610, 679
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	7 cut(s)	47, 94, 376, 450, 481, 608, 677
Fnu4HI	GCNGC	7 cut(s)	145, 148, 157, 160, 279, 498, 645
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	7 cut(s)	145, 148, 157, 160, 279, 498, 645
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	7 cut(s)	145, 148, 157, 160, 279, 498, 645
GsaI	CCCAGC	1 cut(s)	529
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	5 cut(s)	46, 99, 135, 187, 204
HapII	CCGG	4 cut(s)	132, 166, 184, 656
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	7 cut(s)	51, 98, 380, 454, 485, 612, 681
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	26, 344
HinfI	GANTC	3 cut(s)	454, 486, 521
HpaII	CCGG	4 cut(s)	132, 166, 184, 656
HphI	GGTGA	2 cut(s)	88, 364
Hpy166II	GTNNAC	2 cut(s)	171, 422
Hpy188I	TCNGA	2 cut(s)	586, 631
Hpy188III	TCNNGA	3 cut(s)	313, 337, 352
Hpy8I	GTNNAC	2 cut(s)	171, 422
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	6 cut(s)	116, 278, 390, 440, 497, 693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 153, 156, 535
HpyF3I	CTNAG	5 cut(s)	57, 137, 219, 640, 673
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	7 cut(s)	51, 98, 380, 454, 485, 612, 681
HspAI	GCGC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	309, 364
LmnI	GCTCC	2 cut(s)	223, 535
Lsp1109I	GCAGC	5 cut(s)	131, 143, 290, 509, 656
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	311, 366
MboI	GATC	2 cut(s)	309, 364
MboII	GAAGA	8 cut(s)	49, 306, 352, 483, 566, 611, 644, 722
MhlI	GDGCHC	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	4 cut(s)	71, 79, 273, 733
MluNI	TGGCCA	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	99
MroNI	GCCGGC	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	500, 647
MspI	CCGG	4 cut(s)	132, 166, 184, 656
MspR9I	CCNGG	2 cut(s)	291, 596
MvaI	CCWGG	2 cut(s)	291, 596
MwoI	GCNNNNNNNGC	4 cut(s)	141, 153, 156, 535
NaeI	GCCGGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	309, 364
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	7 cut(s)	51, 98, 380, 454, 485, 612, 681
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	20
PaqCI	CACCTGC	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	204
PdiI	GCCGGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	454, 486, 521
PflMI	CCANNNNNTGG	2 cut(s)	482, 532
PfoI	TCCNGGA	1 cut(s)	594
PkrI	GCNGC	7 cut(s)	146, 149, 158, 161, 280, 499, 646
Psp124BI	GAGCTC	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	289, 594
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	2 cut(s)	289, 594
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	2 cut(s)	442, 499
PstNI	CAGNNNCTG	2 cut(s)	144, 647
PvuII	CAGCTG	2 cut(s)	500, 647
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	7 cut(s)	145, 148, 157, 160, 279, 498, 645
Sau3AI	GATC	2 cut(s)	309, 364
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	291, 596
SduI	GDGCHC	1 cut(s)	723
SfcI	CTRYAG	2 cut(s)	438, 495
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	4 cut(s)	71, 79, 273, 733
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	3 cut(s)	147, 160, 659
SstI	GAGCTC	1 cut(s)	723
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	289, 594
StyI	CCWWGG	1 cut(s)	47
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	1 cut(s)	717
TasI	AATT	4 cut(s)	71, 79, 273, 733
TauI	GCSGC	2 cut(s)	150, 162
TfiI	GAWTC	3 cut(s)	454, 486, 521
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	5 cut(s)	144, 156, 278, 497, 644
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	228, 393, 467, 534
TspRI	CASTG	1 cut(s)	326
Van91I	CCANNNNNTGG	2 cut(s)	482, 532
XapI	RAATTY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.