Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005146

Physical Location & Seq

Genomic Coordinates Forward (+)

24050231 .. 24051322

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGCAGGCAACCTTGTTGTGACAAGCTTGGAGTGAAGAAAGGGCCATGGACTGCCGAGGAGGATAAGAAACTGGTGAATTTTCTCCTCACACATGGTCAATGTTGTTGGCGGGCTGTCCCCAAGCTCGCTGGCCTCCGTCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGACTAATTACCTCCGCCCCGACTTGAAAAGAGGCCTCCTTAATGATGCTGAAGAACAACTTGTTATTGACCTCCATGCCCGCCTTGGCAACAGGTGGTCTAAAATTGCAGCAAGATTGCCTGGAAGAACTGACAATGAGATCAAGAACCATTGGAATACACACATCAAGAAAAAGCTTATCAAGATGGGGATTGATCCAATTACTCATGAGCCTCTCCACAAACAGGTCATCACCCCAGAAGAAATGCCTTGTGAAGCAAGCGATCAACCTGCAGGCTCAGACGTGAATATTCCGCAGAATATGGATATCCCAGAACATGAAGTCTATAGCAACAGTGAAGCAAGCAATCAACCTGCAGGCTTAGACATGAATATTCCGAGGAATATGAATATCCCAGAACATGAAATCTCTAGCAACAGTGATGGTGGTGGCTCTGCAAGTGAAAATTCCCCAAGCAATGAGTCTCAGTCAGCTGAGCCAAACCCTAATTACATTGAGGAAGGTGACCCATTGGTGAGTTTCATATTATCCGATACATTTCTCGAGGATTTAACATGGGACTTTTCGACCTCGTCAGAAGACGGCTCAGCTGATAATCCAACGGAGGAGAATAGCTTAGCATGGTTCATGGACTGTAAGGATTTTGGAGTTCAAGATTTTGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

280

Amino Acids

31.28

Weight (kDa)

4.92

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22680
fragaria_vesca	FvH4_5g00480 FvH4_7g27910
malus_domestica	MD00G1104700.v1.1 MD04G1080600.v1.1 MD07G1256200.v1.1
prunus_persica	Prupe.2G280100_v2.0.a1 Prupe.5G077500_v2.0.a1
pyrus_communis	pycom01g19580 pycom04g07290 pycom07g22910
rosa_chinensis	RchiOBHm_Chr1g0374861 RchiOBHm_Chr7g0202031
rosa_laevigata	RLG00000003632 RLG00000026711
rosa_multiflora	Rmu_sc0004947.1_g000027 Rmu_sc0006592.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254920 Rroxscaffold_4G00283220
rosa_rugosa	Rorug01G0385400 Rorug07G0067400
rosa_samantha	Rh1AG397000 Rh1BG360800 Rh1CG374500 Rh7AG194700 Rh7BG196200 Rh7CG206000 Rh7DG201400
rosa_wichuraiana	Rw1G035200 Rw7G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	448, 532
AciI	CCGC	5 cut(s)	112, 160, 184, 250, 464
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	79, 616
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	2 cut(s)	196, 824
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	8 cut(s)	28, 127, 156, 346, 644, 761, 786, 835
AluI	AGCT	8 cut(s)	28, 127, 156, 346, 644, 761, 786, 835
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	713
AoxI	GGCC	3 cut(s)	44, 133, 202
ApeKI	GCWGC	2 cut(s)	156, 278
ApoI	RAATTY	2 cut(s)	79, 616
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	88, 394, 686, 697
AvaI	CYCGRG	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	756
BbvI	GCAGC	2 cut(s)	143, 290
BccI	CCATC	2 cut(s)	349, 587
BceAI	ACGGC	1 cut(s)	769
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	3 cut(s)	441, 496, 525
BfuAI	ACCTGC	2 cut(s)	448, 532
BisI	GCNGC	3 cut(s)	157, 160, 279
BlpI	GCTNAGC	3 cut(s)	645, 757, 787
BlsI	GCNGC	3 cut(s)	158, 161, 280
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	713
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	756
Bpu1102I	GCTNAGC	3 cut(s)	645, 757, 787
BsaJI	CCNNGG	4 cut(s)	47, 57, 253, 548
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	47, 57, 253, 548
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	4 cut(s)	462, 636, 650, 771
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	3 cut(s)	74, 77, 791
BseXI	GCAGC	2 cut(s)	143, 290
BshFI	GGCC	3 cut(s)	46, 135, 204
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	2 cut(s)	104, 743
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	639
BsmFI	GGGAC	2 cut(s)	104, 743
BsnI	GGCC	3 cut(s)	46, 135, 204
BsoBI	CYCGRG	1 cut(s)	713
Bsp143I	GATC	3 cut(s)	309, 364, 433
Bsp1720I	GCTNAGC	3 cut(s)	645, 757, 787
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	112, 160, 184, 250, 464
BspANI	GGCC	3 cut(s)	46, 135, 204
BspCNI	CTCAG	4 cut(s)	461, 637, 649, 770
BspHI	TCATGA	1 cut(s)	376
BspMAI	CTGCAG	2 cut(s)	445, 529
BspMI	ACCTGC	2 cut(s)	448, 532
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	4 cut(s)	47, 57, 253, 548
BssMI	GATC	3 cut(s)	309, 364, 433
BssT1I	CCWWGG	2 cut(s)	47, 253
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	506, 590, 806
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	9 cut(s)	8, 114, 129, 133, 250, 430, 445, 514, 529
BstDEI	CTNAG	6 cut(s)	448, 532, 636, 645, 757, 787
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	674
BstKTI	GATC	3 cut(s)	312, 367, 436
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	3 cut(s)	309, 364, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 156
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	3 cut(s)	441, 496, 525
BstV1I	GCAGC	2 cut(s)	143, 290
BstV2I	GAAGAC	1 cut(s)	756
BsuRI	GGCC	3 cut(s)	46, 135, 204
BtgI	CCRYGG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	511, 595
BveI	ACCTGC	2 cut(s)	448, 532
Cac8I	GCNNGC	9 cut(s)	8, 114, 129, 133, 250, 430, 445, 514, 529
CciI	TCATGA	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	44
DdeI	CTNAG	6 cut(s)	448, 532, 636, 645, 757, 787
DpnI	GATC	3 cut(s)	311, 366, 435
DpnII	GATC	3 cut(s)	309, 364, 433
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	47, 253
Eco147I	AGGCCT	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	713
Eco91I	GGTNACC	1 cut(s)	674
EcoO65I	GGTNACC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	47, 253
ErhI	CCWWGG	2 cut(s)	47, 253
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	2 cut(s)	104, 743
FauI	CCCGC	2 cut(s)	105, 257
Fnu4HI	GCNGC	3 cut(s)	157, 160, 279
Fsp4HI	GCNGC	3 cut(s)	157, 160, 279
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	3 cut(s)	157, 160, 279
HaeIII	GGCC	3 cut(s)	46, 135, 204
HapII	CCGG	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	26, 344
HinfI	GANTC	1 cut(s)	632
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	4 cut(s)	88, 394, 686, 697
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	4 cut(s)	451, 549, 703, 748
Hpy188III	TCNNGA	6 cut(s)	313, 337, 352, 377, 713, 824
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	3 cut(s)	506, 590, 806
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	278, 443, 527, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 156
HpyF3I	CTNAG	6 cut(s)	448, 532, 636, 645, 757, 787
HpySE526I	ACGT	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	309, 364, 433
Lsp1109I	GCAGC	2 cut(s)	143, 290
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	20, 674
MalI	GATC	3 cut(s)	311, 366, 435
MboI	GATC	3 cut(s)	309, 364, 433
MboII	GAAGA	5 cut(s)	49, 233, 306, 422, 761
MluCI	AATT	6 cut(s)	79, 175, 273, 369, 616, 658
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	794
MseI	TTAA	2 cut(s)	210, 722
MspA1I	CMGCKG	2 cut(s)	644, 761
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	141, 156
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	309, 364, 433
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	20, 674
PaeR7I	CTCGAG	1 cut(s)	713
PagI	TCATGA	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	204
PflFI	GACNNNGTC	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	158, 161, 280
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	2 cut(s)	445, 529
PsyI	GACNNNGTC	1 cut(s)	742
PvuII	CAGCTG	2 cut(s)	644, 761
SaqAI	TTAA	2 cut(s)	210, 722
SatI	GCNGC	3 cut(s)	157, 160, 279
Sau3AI	GATC	3 cut(s)	309, 364, 433
Sau96I	GGNCC	1 cut(s)	44
SbfI	CCTGCAGG	2 cut(s)	445, 529
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	291
SdaI	CCTGCAGG	2 cut(s)	445, 529
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	3 cut(s)	441, 496, 525
Sfr274I	CTCGAG	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse8387I	CCTGCAGG	2 cut(s)	445, 529
Sse9I	AATT	6 cut(s)	79, 175, 273, 369, 616, 658
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	5 cut(s)	112, 160, 184, 250, 464
SspI	AATATT	2 cut(s)	460, 544
SspMI	CTAG	1 cut(s)	582
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	47, 253
TaaI	ACNGT	3 cut(s)	506, 590, 806
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	714, 737
TasI	AATT	6 cut(s)	79, 175, 273, 369, 616, 658
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	210, 722
Tru9I	TTAA	2 cut(s)	210, 722
TscAI	CASTG	2 cut(s)	511, 595
TseFI	GTSAC	2 cut(s)	20, 674
TseI	GCWGC	2 cut(s)	156, 278
Tsp45I	GTSAC	2 cut(s)	20, 674
TspDTI	ATGAA	6 cut(s)	504, 554, 572, 588, 682, 787
TspGWI	ACGGA	2 cut(s)	128, 788
TspRI	CASTG	2 cut(s)	511, 595
Tth111I	GACNNNGTC	1 cut(s)	742
XapI	RAATTY	2 cut(s)	79, 616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	713
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.