Rw7G017060
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005146
Physical Location & Seq
Reverse (-)
17686957 .. 17688435
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017060.1

Sequence Viewer

Length: 837 bp
ATGGGAAGGCAGCCTTGCTGTGACAAACTTGGGGTTAAGAAAGGGCCATGGACAGCCGAGGAGGATAAGAAGCTCATCAACTTCATTCTCACAAATGGCCAGTGTTGCTGGAGAGCCGTCCCCAAGCTCGCTGGGCTTCGCCGCTGTGGCAAGAGTTGCAGACTCCGTTGGACCAACTATCTCCGTCCCGACTTGAAGAGAGGCCTCCTTACAGAATCTGAAGAACAGTTGGTCATTGATCTCCATGCTCGTCTCGGAAATAGGTGGTCCAAGATTGCAGCCAGATTGCCAGGGAGGACTGATAATGAAATCAAGAATCACTGGAACACCCACATCAAGAAAAAGCTGCTTAGAATGGGAATTGATCCCGTCACGCATGAACCCCTCCACAAAGATCAAGATGACTTGATCAACAAGGAAACTATTATTTCATCCCATACTAATCAAGCTAACAATAACTTGCCTCAATCTACAACTGAAAATTCATCTTCAAACTCATCACCAGCTGAGAATTCATCATCAAGCTCATCACCAAATGAAAATTCTTCTGGAGACGACCAATCGACTTTAATTGATAGCATTTGCAACGTTGACGAGTCGTTGATGAACAGTCTTTGGGTGGATGAAACTCCGCTAATCGATGCATTGTGGAACAGTGATCAAGTACCAGATGGAGGAAATTACATCGAAAATGGCATGGGAGTGCAATCTAATTGGGAGGAGAATTGCTCATGGCTTTTGGACTGCCAAGACTTTGGCGTTCATGATTTCGGTATGGATTGCTTCATCGAAACCGAATTAAATGCCCTCGACACATTAGGGATGGAGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

278

Amino Acids

31.26

Weight (kDa)

5.06

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.1e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 632
AclI AACGTT 1 cut(s) 588
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 4 cut(s) 481, 511, 541, 831
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 666
AfiI CCNNNNNNNGG 1 cut(s) 674
AgsI TTSAA 2 cut(s) 196, 492
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AluBI AGCT 6 cut(s) 73, 127, 346, 449, 506, 525
AluI AGCT 6 cut(s) 73, 127, 346, 449, 506, 525
Alw26I GTCTC 2 cut(s) 257, 546
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 3 cut(s) 44, 97, 202
ApeKI GCWGC 3 cut(s) 10, 278, 346
ApoI RAATTY 4 cut(s) 481, 511, 541, 831
AspS9I GGNCC 3 cut(s) 44, 171, 267
AsuHPI GGTGA 2 cut(s) 492, 522
AvaII GGWCC 2 cut(s) 171, 267
BalI TGGCCA 1 cut(s) 99
BbvI GCAGC 3 cut(s) 22, 290, 333
BccI CCATC 2 cut(s) 665, 817
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 408, 658
BcoDI GTCTC 2 cut(s) 257, 546
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 4 cut(s) 11, 142, 279, 347
BlsI GCNGC 4 cut(s) 12, 143, 280, 348
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 171, 267
BmgT120I GGNCC 3 cut(s) 44, 171, 267
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 631
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 2 cut(s) 130, 570
Bsa29I ATCGAT 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 47, 57, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse1I ACTGG 2 cut(s) 100, 326
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 639
BseDI CCNNGG 3 cut(s) 47, 57, 290
BseGI GGATG 3 cut(s) 431, 628, 828
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 100, 326
BseRI GAGGAG 2 cut(s) 74, 734
BseXI GCAGC 3 cut(s) 22, 290, 333
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 3 cut(s) 46, 99, 204
BshVI ATCGAT 1 cut(s) 639
BslFI GGGAC 2 cut(s) 104, 171
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 2 cut(s) 257, 546
BsmBI CGTCTC 2 cut(s) 257, 546
BsmFI GGGAC 2 cut(s) 104, 171
BsnI GGCC 3 cut(s) 46, 99, 204
Bsp143I GATC 5 cut(s) 238, 364, 394, 408, 658
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 142, 632
BspANI GGCC 3 cut(s) 46, 99, 204
BspCNI CTCAG 1 cut(s) 499
BspDI ATCGAT 1 cut(s) 639
BspHI TCATGA 1 cut(s) 763
BspPI GGATC 1 cut(s) 359
BsrI ACTGG 2 cut(s) 100, 326
BssECI CCNNGG 3 cut(s) 47, 57, 290
BssMI GATC 5 cut(s) 238, 364, 394, 408, 658
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 228, 611, 656
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 350, 507
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 431, 628, 828
BstKTI GATC 5 cut(s) 241, 367, 397, 411, 661
BstMAI GTCTC 2 cut(s) 257, 546
BstMBI GATC 5 cut(s) 238, 364, 394, 408, 658
BstMWI GCNNNNNNNGC 4 cut(s) 105, 133, 147, 156
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 22, 290, 333
BstXI CCANNNNNNTGG 1 cut(s) 755
Bsu15I ATCGAT 1 cut(s) 639
BsuRI GGCC 3 cut(s) 46, 99, 204
BsuTUI ATCGAT 1 cut(s) 639
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 431, 628, 828
BtsIMutI CAGTG 3 cut(s) 107, 319, 661
Cac8I GCNNGC 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 763
Cfr13I GGNCC 3 cut(s) 44, 171, 267
ClaI ATCGAT 1 cut(s) 639
Csp6I GTAC 1 cut(s) 665
CviAII CATG 6 cut(s) 48, 245, 377, 697, 732, 764
CviQI GTAC 1 cut(s) 665
DdeI CTNAG 2 cut(s) 350, 507
DpnI GATC 5 cut(s) 240, 366, 396, 410, 660
DpnII GATC 5 cut(s) 238, 364, 394, 408, 658
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 171, 267
Eco57I CTGAAG 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 2 cut(s) 257, 546
FaeI CATG 6 cut(s) 51, 248, 380, 700, 735, 767
FaiI YATR 8 cut(s) 49, 246, 378, 438, 698, 733, 765, 776
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 2 cut(s) 104, 171
FatI CATG 6 cut(s) 47, 244, 376, 696, 731, 763
FbaI TGATCA 2 cut(s) 408, 658
Fnu4HI GCNGC 4 cut(s) 11, 142, 279, 347
FokI GGATG 2 cut(s) 418, 635
Fsp4HI GCNGC 4 cut(s) 11, 142, 279, 347
GluI GCNGC 4 cut(s) 11, 142, 279, 347
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 130, 570
HaeIII GGCC 3 cut(s) 46, 99, 204
Hin1II CATG 6 cut(s) 51, 248, 380, 700, 735, 767
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 4 cut(s) 162, 215, 316, 596
HphI GGTGA 2 cut(s) 492, 522
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 2 cut(s) 220, 257
Hpy188III TCNNGA 6 cut(s) 188, 313, 337, 398, 549, 764
Hpy8I GTNNAC 1 cut(s) 592
HpyCH4III ACNGT 3 cut(s) 228, 611, 656
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 5 cut(s) 159, 278, 585, 644, 706
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 133, 147, 156
HpyF3I CTNAG 2 cut(s) 350, 507
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 6 cut(s) 51, 248, 380, 700, 735, 767
Ksp22I TGATCA 2 cut(s) 408, 658
Kzo9I GATC 5 cut(s) 238, 364, 394, 408, 658
Lsp1109I GCAGC 3 cut(s) 22, 290, 333
LweI GCATC 1 cut(s) 631
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 20, 370
MalI GATC 5 cut(s) 240, 366, 396, 410, 660
MboI GATC 5 cut(s) 238, 364, 394, 408, 658
MboII GAAGA 4 cut(s) 208, 233, 480, 537
MlsI TGGCCA 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 2 cut(s) 156, 605
MmeI TCCRAC 1 cut(s) 149
Mox20I TGGCCA 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 646
MscI TGGCCA 1 cut(s) 99
MseI TTAA 4 cut(s) 36, 569, 800, 835
MslI CAYNNNNRTG 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 144, 506
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 105, 133, 147, 156
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 238, 364, 394, 408, 658
NlaIII CATG 6 cut(s) 51, 248, 380, 700, 735, 767
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 20, 370
NsiI ATGCAT 1 cut(s) 646
PagI TCATGA 1 cut(s) 763
PceI AGGCCT 1 cut(s) 204
PfeI GAWTC 2 cut(s) 215, 316
PkrI GCNGC 4 cut(s) 12, 143, 280, 348
PleI GAGTC 2 cut(s) 156, 604
PpsI GAGTC 2 cut(s) 156, 604
Psp1406I AACGTT 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 3 cut(s) 44, 171, 267
PstNI CAGNNNCTG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 1 cut(s) 666
RsaNI GTAC 1 cut(s) 665
RseI CAYNNNNRTG 1 cut(s) 701
SaqAI TTAA 4 cut(s) 36, 569, 800, 835
SatI GCNGC 4 cut(s) 11, 142, 279, 347
Sau3AI GATC 5 cut(s) 238, 364, 394, 408, 658
Sau96I GGNCC 3 cut(s) 44, 171, 267
SchI GAGTC 2 cut(s) 156, 605
ScrFI CCNGG 1 cut(s) 291
SetI ASST 8 cut(s) 75, 129, 266, 348, 451, 508, 527, 591
SfaNI GCATC 1 cut(s) 631
SinI GGWCC 2 cut(s) 171, 267
SmiMI CAYNNNNRTG 1 cut(s) 701
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 2 cut(s) 142, 632
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 228, 611, 656
TaiI ACGT 1 cut(s) 591
TaqI TCGA 5 cut(s) 563, 639, 687, 789, 810
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 215, 316
Tru1I TTAA 4 cut(s) 36, 569, 800, 835
Tru9I TTAA 4 cut(s) 36, 569, 800, 835
TscAI CASTG 3 cut(s) 107, 326, 661
TseFI GTSAC 2 cut(s) 20, 370
TseI GCWGC 3 cut(s) 10, 278, 346
Tsp45I GTSAC 2 cut(s) 20, 370
TspGWI ACGGA 2 cut(s) 155, 173
TspRI CASTG 3 cut(s) 107, 326, 661
VpaK11BI GGWCC 2 cut(s) 171, 267
XapI RAATTY 4 cut(s) 481, 511, 541, 831
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.