FvH4_5g00480
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005146
Physical Location & Seq
Forward (+)
309003 .. 311346
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00480.t1

Sequence Viewer

Length: 840 bp
ATGGGAAGGCAACCTTGCTGCGACAAACTTGGGGTTAAGAAAGGGCCATGGACAGCCGAGGAGGATAAGAAGCTCATCAACTTCATCCTCACAAATGGCCAGTGTTGCTGGAGAGCTGTCCCGAAGCTGGCCGGCCTTCGCCGCTGTGGCAAGAGTTGCAGGCTCCGTTGGACCAACTATCTCCGTCCCGACTTGAAGAGAGGCCTCCTTACAGAATCTGAAGAACAGTTGGTCATTGATCTCCATGCTCGTCTTGGAAATAGGTGGTCCAAGATTGCAGCCAGATTGCCAGGGAGGACTGATAATGAAATCAAGAATCACTGGAACACCCACATCAAGAAAAAGTTGCTTAGGATGGGAATCGATCCTGTAACTCATGAACTCCTGCATAAAGATCAAGATGACTTGGCTAACAAGGAAACTACTATTTCATCCCATACTGATCCAGCTAACAGCAACTTGCCACAATCAACAGCCGAAAATTCTTCTTCAAACTCATCACCAGCTGAGAATTCATCTTCAATCTCATCCCCGAATGAAAATCCTAGCACTGGAGATGACCAATCAACTTTAATTGATAGCATTTGCAACATTGACGAGTCGTTGATGAACAGTCTTTGGGTGGATGAAACTCCGCTAATCGATGCGTTGTGGAACAATGATCAAGTAGCAGATGGAGGAAATTACATCGAGAATGGCATGGGAATGGTATCTAATTGGGAGGAGAATTGCTCATGGCTTTTGGACTGTCAAGACTTTGGCGTTCATGATTTTGGTATGGATTGTTTCATCGATACCGAACTAAATGCTCTCGACACATTAGGGATTGAGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

280

Amino Acids

31.25

Weight (kDa)

4.98

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.9e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.1e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 111 1.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 635
AclWI GGATC 2 cut(s) 359, 437
AcoI YGGCCR 2 cut(s) 97, 129
AcsI RAATTY 3 cut(s) 481, 511, 834
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 127, 551
AgsI TTSAA 3 cut(s) 196, 492, 522
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 73, 116, 127, 449, 506
AluI AGCT 5 cut(s) 73, 116, 127, 449, 506
AlwI GGATC 2 cut(s) 359, 437
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 5 cut(s) 44, 97, 129, 133, 202
ApeKI GCWGC 2 cut(s) 18, 278
ApoI RAATTY 3 cut(s) 481, 511, 834
AspS9I GGNCC 3 cut(s) 44, 171, 267
AsuHPI GGTGA 1 cut(s) 492
AvaII GGWCC 2 cut(s) 171, 267
BalI TGGCCA 1 cut(s) 99
BbvI GCAGC 2 cut(s) 5, 290
BccI CCATC 2 cut(s) 349, 668
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 661
BfaI CTAG 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 3 cut(s) 19, 142, 279
BlsI GCNGC 3 cut(s) 20, 143, 280
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 171, 267
BmgT120I GGNCC 3 cut(s) 44, 171, 267
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 634
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpmI CTGGAG 2 cut(s) 130, 573
Bpu10I CCTNAGC 1 cut(s) 350
Bsa29I ATCGAT 3 cut(s) 363, 642, 792
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 47, 57, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 551
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 100, 326, 556
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 3 cut(s) 363, 642, 792
BseDI CCNNGG 3 cut(s) 47, 57, 290
BseGI GGATG 5 cut(s) 84, 360, 431, 527, 631
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 127, 551
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 3 cut(s) 100, 326, 556
BseRI GAGGAG 2 cut(s) 74, 737
BseXI GCAGC 2 cut(s) 5, 290
BshFI GGCC 5 cut(s) 46, 99, 131, 135, 204
BshVI ATCGAT 3 cut(s) 363, 642, 792
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 2 cut(s) 104, 171
BslI CCNNNNNNNGG 2 cut(s) 127, 551
BsmFI GGGAC 2 cut(s) 104, 171
BsnI GGCC 5 cut(s) 46, 99, 131, 135, 204
Bsp143I GATC 5 cut(s) 238, 364, 394, 442, 661
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 142, 635
BspANI GGCC 5 cut(s) 46, 99, 131, 135, 204
BspCNI CTCAG 1 cut(s) 499
BspDI ATCGAT 3 cut(s) 363, 642, 792
BspHI TCATGA 2 cut(s) 376, 766
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 2 cut(s) 359, 437
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 3 cut(s) 100, 326, 556
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 47, 57, 290
BssMI GATC 5 cut(s) 238, 364, 394, 442, 661
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 228, 614, 749
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 129, 133, 161
BstDEI CTNAG 2 cut(s) 350, 507
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 84, 360, 431, 527, 631
BstKTI GATC 5 cut(s) 241, 367, 397, 445, 664
BstMBI GATC 5 cut(s) 238, 364, 394, 442, 661
BstMWI GCNNNNNNNGC 4 cut(s) 105, 141, 147, 156
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 5, 290
Bsu15I ATCGAT 3 cut(s) 363, 642, 792
BsuRI GGCC 5 cut(s) 46, 99, 131, 135, 204
BsuTUI ATCGAT 3 cut(s) 363, 642, 792
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 84, 360, 431, 527, 631
BtsIMutI CAGTG 3 cut(s) 107, 319, 549
Cac8I GCNNGC 3 cut(s) 129, 133, 161
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 2 cut(s) 376, 766
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 44, 171, 267
ClaI ATCGAT 3 cut(s) 363, 642, 792
CviAII CATG 6 cut(s) 48, 245, 377, 700, 735, 767
DdeI CTNAG 2 cut(s) 350, 507
DpnI GATC 5 cut(s) 240, 366, 396, 444, 663
DpnII GATC 5 cut(s) 238, 364, 394, 442, 661
EaeI YGGCCR 2 cut(s) 97, 129
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 171, 267
Eco57I CTGAAG 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 51, 248, 380, 703, 738, 770
FaiI YATR 9 cut(s) 49, 246, 378, 390, 438, 701, 736, 768, 779
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 2 cut(s) 104, 171
FatI CATG 6 cut(s) 47, 244, 376, 699, 734, 766
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 3 cut(s) 19, 142, 279
FokI GGATG 5 cut(s) 71, 367, 418, 514, 638
FseI GGCCGGCC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 19, 142, 279
FspBI CTAG 1 cut(s) 546
GluI GCNGC 3 cut(s) 19, 142, 279
GsuI CTGGAG 2 cut(s) 130, 573
HaeIII GGCC 5 cut(s) 46, 99, 131, 135, 204
HapII CCGG 1 cut(s) 132
Hin1II CATG 6 cut(s) 51, 248, 380, 703, 738, 770
HinfI GANTC 4 cut(s) 215, 316, 360, 599
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 492
Hpy188I TCNGA 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 3 cut(s) 228, 614, 749
HpyCH4V TGCA 4 cut(s) 159, 278, 388, 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 141, 147, 156
HpyF3I CTNAG 2 cut(s) 350, 507
Hsp92II CATG 6 cut(s) 51, 248, 380, 703, 738, 770
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 5 cut(s) 238, 364, 394, 442, 661
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 2 cut(s) 5, 290
LweI GCATC 1 cut(s) 634
MaeI CTAG 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 370
MalI GATC 5 cut(s) 240, 366, 396, 444, 663
MboI GATC 5 cut(s) 238, 364, 394, 442, 661
MboII GAAGA 5 cut(s) 208, 233, 477, 480, 510
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 481, 511, 573, 682, 715, 727, 834
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 8 cut(s) 52, 55, 98, 194, 215, 288, 671, 715
Mox20I TGGCCA 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 131
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 36, 572, 838
MslI CAYNNNNRTG 1 cut(s) 704
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 144, 506
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 105, 141, 147, 156
NaeI GCCGGC 1 cut(s) 133
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 238, 364, 394, 442, 661
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 6 cut(s) 51, 248, 380, 703, 738, 770
NlaIV GGNNCC 1 cut(s) 164
NmeAIII GCCGAG 1 cut(s) 82
PagI TCATGA 2 cut(s) 376, 766
PceI AGGCCT 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 3 cut(s) 215, 316, 360
PkrI GCNGC 3 cut(s) 20, 143, 280
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 44, 171, 267
PstNI CAGNNNCTG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 506
RigI GGCCGGCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 3 cut(s) 36, 572, 838
SatI GCNGC 3 cut(s) 19, 142, 279
Sau3AI GATC 5 cut(s) 238, 364, 394, 442, 661
Sau96I GGNCC 3 cut(s) 44, 171, 267
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 291
SetI ASST 7 cut(s) 16, 75, 118, 129, 266, 451, 508
SfaNI GCATC 1 cut(s) 634
SinI GGWCC 2 cut(s) 171, 267
SmiMI CAYNNNNRTG 1 cut(s) 704
Sse9I AATT 7 cut(s) 481, 511, 573, 682, 715, 727, 834
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 2 cut(s) 142, 635
SspMI CTAG 1 cut(s) 546
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 228, 614, 749
TaqI TCGA 5 cut(s) 363, 642, 690, 792, 813
TasI AATT 7 cut(s) 481, 511, 573, 682, 715, 727, 834
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 3 cut(s) 215, 316, 360
Tru1I TTAA 3 cut(s) 36, 572, 838
Tru9I TTAA 3 cut(s) 36, 572, 838
TscAI CASTG 3 cut(s) 107, 326, 556
TseI GCWGC 2 cut(s) 18, 278
TspGWI ACGGA 2 cut(s) 155, 173
TspRI CASTG 3 cut(s) 107, 326, 556
VpaK11BI GGWCC 2 cut(s) 171, 267
XapI RAATTY 3 cut(s) 481, 511, 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.