RLG00000026711
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005146
Physical Location & Seq
Reverse (-)
5237811 .. 5238682
872 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026711

Sequence Viewer

Length: 753 bp
ATGGGCAGGCAACCTTGTTGTGACAAGCTTGGCGTCAAGAAAGGTCCATGGACAGCCGAGGAGGACAAGAAACTAGTGAACTTCATCCTCACTCATGGTCAATGCTGCTGGCGCGCCGTCCCCAAGCTCGCGGGTCTGCGCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGACTAACTATCTCCGGCCCGACTTGAAGCGAGGGCTACTCAATGAAGCTGAGGAGCAGCTTGTCATTGACCTCCATGCTAGTCTTGGCAACAGGTGGTCCAAAATTGCAGCAAGATTGCCTGGAAGAACAGACAATGAGATCAAGAATCACTGGAATACACACATCAAGAAAAAACTTATCAAGATGGGGATTGACCCAATTACTCATGCGCCTCTCCAAAAACAAGTGACTACAACCCCACAGGAAACGCCTTGTGAAGCAGATATTCAACAAAGTGTGAACATCCCGGAGCATGGAGTCTCCGGCAACGAAAATGGCAGCTCTGCAACTGAGAATTCCTCGAGCAATGAAGCCCAGTCACTAATTGATGAGGTCAATGCTAATGGTGACGATGACCCTTTGGTGAGTTACATATTATCCGATACGTTTCTTCAGGATTGGTCATGGAATTTTCCAGCTGTGGAAGACAATTACAGTGATCTTGGCTTGTCTTCAACTTCATCAGAGGATAGCTCAGCTTGGTTTATGGATTGCAAGGATTTTGGGGTTGAGGATTTCGAGCTTGGAAATTGTATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

251

Amino Acids

27.95

Weight (kDa)

5.2

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.4e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 72 - 111 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 115 5.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 114, 131
AciI CCGC 5 cut(s) 131, 142, 147, 160, 166
AcsI RAATTY 2 cut(s) 505, 619
AcuI CTGAAG 1 cut(s) 587
AcyI GRCGYC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 3 cut(s) 196, 440, 666
AhlI ACTAGT 1 cut(s) 73
AjnI CCWGG 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 6 cut(s) 105, 144, 156, 226, 278, 489
ApoI RAATTY 2 cut(s) 505, 619
AscI GGCGCGCC 1 cut(s) 112
AspLEI GCGC 4 cut(s) 114, 116, 141, 382
AspS9I GGNCC 3 cut(s) 44, 186, 267
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 569, 586
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 2 cut(s) 44, 267
BbsI GAAGAC 2 cut(s) 642, 654
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 1 cut(s) 475
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 2 cut(s) 74, 249
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
BlpI GCTNAGC 1 cut(s) 685
BlsI GCNGC 9 cut(s) 107, 143, 146, 149, 158, 161, 228, 280, 491
Bme1390I CCNGG 2 cut(s) 291, 458
Bme18I GGWCC 2 cut(s) 44, 267
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 3 cut(s) 44, 186, 267
BmrFI CCNGG 2 cut(s) 291, 458
BmrI ACTGGG 1 cut(s) 520
BmuI ACTGGG 1 cut(s) 520
BpiI GAAGAC 2 cut(s) 642, 654
BplI GAGNNNNNCTC 6 cut(s) 192, 224, 494, 526, 668, 700
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 685
BpuMI CCSGG 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 47, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 326, 526
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 47, 57
BseGI GGATG 2 cut(s) 84, 453
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 3 cut(s) 210, 492, 699
BseNI ACTGG 2 cut(s) 326, 526
BsePI GCGCGC 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 74, 236
BseXI GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
Bsh1236I CGCG 2 cut(s) 114, 131
BshFI GGCC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 3 cut(s) 184, 458, 474
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 511
Bsp143I GATC 2 cut(s) 309, 649
Bsp1720I GCTNAGC 1 cut(s) 685
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 131, 142, 147, 160, 166
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 3 cut(s) 211, 493, 698
BspFNI CGCG 2 cut(s) 114, 131
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 2 cut(s) 326, 526
BssECI CCNNGG 2 cut(s) 47, 57
BssHII GCGCGC 1 cut(s) 112
BssMI GATC 2 cut(s) 309, 649
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 647
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 8, 110, 114, 129
BstDEI CTNAG 3 cut(s) 219, 501, 685
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 84, 453
BstFNI CGCG 2 cut(s) 114, 131
BstHHI GCGC 4 cut(s) 114, 116, 141, 382
BstKTI GATC 2 cut(s) 312, 652
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 2 cut(s) 309, 649
BstMWI GCNNNNNNNGC 5 cut(s) 111, 147, 153, 156, 165
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 289, 456
BstUI CGCG 2 cut(s) 114, 131
BstV1I GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
BstV2I GAAGAC 2 cut(s) 642, 654
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 84, 453
BtsIMutI CAGTG 2 cut(s) 319, 652
Cac8I GCNNGC 4 cut(s) 8, 110, 114, 129
CfoI GCGC 4 cut(s) 114, 116, 141, 382
Cfr13I GGNCC 3 cut(s) 44, 186, 267
CseI GACGC 1 cut(s) 22
CviAII CATG 6 cut(s) 48, 95, 245, 377, 464, 615
DdeI CTNAG 3 cut(s) 219, 501, 685
DpnI GATC 2 cut(s) 311, 651
DpnII GATC 2 cut(s) 309, 649
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 44, 267
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 51, 98, 248, 380, 467, 618
FaiI YATR 8 cut(s) 49, 96, 246, 378, 465, 584, 616, 698
FaqI GGGAC 1 cut(s) 104
FatI CATG 6 cut(s) 47, 94, 244, 376, 463, 614
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
FokI GGATG 2 cut(s) 71, 440
Fsp4HI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
FspBI CTAG 2 cut(s) 74, 249
GlaI GCGC 4 cut(s) 113, 115, 140, 381
GluI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
HaeIII GGCC 1 cut(s) 187
HapII CCGG 3 cut(s) 184, 458, 474
HgaI GACGC 1 cut(s) 22
HhaI GCGC 4 cut(s) 114, 116, 141, 382
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 6 cut(s) 51, 98, 248, 380, 467, 618
Hin6I GCGC 4 cut(s) 112, 114, 139, 380
HinP1I GCGC 4 cut(s) 112, 114, 139, 380
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 316, 468
HpaII CCGG 3 cut(s) 184, 458, 474
HphI GGTGA 2 cut(s) 569, 586
Hpy166II GTNNAC 2 cut(s) 79, 451
Hpy188I TCNGA 2 cut(s) 592, 676
Hpy188III TCNNGA 5 cut(s) 37, 313, 337, 352, 605
Hpy8I GTNNAC 2 cut(s) 79, 451
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 3 cut(s) 278, 497, 705
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 147, 153, 156, 165
HpyF3I CTNAG 3 cut(s) 219, 501, 685
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 6 cut(s) 51, 98, 248, 380, 467, 618
HspAI GCGC 4 cut(s) 112, 114, 139, 380
Kzo9I GATC 2 cut(s) 309, 649
LmnI GCTCC 2 cut(s) 223, 460
Lsp1109I GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
MaeI CTAG 2 cut(s) 74, 249
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 5 cut(s) 20, 397, 528, 557, 578
MalI GATC 2 cut(s) 311, 651
MboI GATC 2 cut(s) 309, 649
MboII GAAGA 4 cut(s) 306, 593, 647, 654
MluCI AATT 8 cut(s) 273, 369, 505, 534, 619, 640, 739, 748
MlyI GAGTC 1 cut(s) 477
MseI TTAA 1 cut(s) 751
MspA1I CMGCKG 3 cut(s) 144, 168, 629
MspI CCGG 3 cut(s) 184, 458, 474
MspR9I CCNGG 2 cut(s) 291, 458
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 2 cut(s) 114, 131
MwoI GCNNNNNNNGC 5 cut(s) 111, 147, 153, 156, 165
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 1 cut(s) 47
NdeII GATC 2 cut(s) 309, 649
NlaIII CATG 6 cut(s) 51, 98, 248, 380, 467, 618
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 4 cut(s) 20, 397, 528, 557
PaeR7I CTCGAG 1 cut(s) 511
PalAI GGCGCGCC 1 cut(s) 112
PauI GCGCGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 316
PfoI TCCNGGA 1 cut(s) 456
PkrI GCNGC 9 cut(s) 107, 143, 146, 149, 158, 161, 228, 280, 491
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 3 cut(s) 44, 186, 267
PspXI VCTCGAGB 1 cut(s) 511
PteI GCGCGC 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 629
SaqAI TTAA 1 cut(s) 751
SatI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
Sau3AI GATC 2 cut(s) 309, 649
Sau96I GGNCC 3 cut(s) 44, 186, 267
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 291, 458
Sfr274I CTCGAG 1 cut(s) 511
SgsI GGCGCGCC 1 cut(s) 112
SinI GGWCC 2 cut(s) 44, 267
SlaI CTCGAG 1 cut(s) 511
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SpeI ACTAGT 1 cut(s) 73
Sse9I AATT 8 cut(s) 273, 369, 505, 534, 619, 640, 739, 748
SsiI CCGC 5 cut(s) 131, 142, 147, 160, 166
SspMI CTAG 2 cut(s) 74, 249
StyD4I CCNGG 2 cut(s) 289, 456
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 647
TaiI ACGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 512, 729
TasI AATT 8 cut(s) 273, 369, 505, 534, 619, 640, 739, 748
TauI GCSGC 3 cut(s) 144, 150, 162
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 751
Tru9I TTAA 1 cut(s) 751
TscAI CASTG 2 cut(s) 326, 652
TseFI GTSAC 4 cut(s) 20, 397, 528, 557
TseI GCWGC 6 cut(s) 105, 144, 156, 226, 278, 489
Tsp45I GTSAC 4 cut(s) 20, 397, 528, 557
TspDTI ATGAA 4 cut(s) 73, 228, 534, 660
TspRI CASTG 2 cut(s) 326, 652
VpaK11BI GGWCC 2 cut(s) 44, 267
XapI RAATTY 2 cut(s) 505, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 511
XspI CTAG 2 cut(s) 74, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.