Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005146

Physical Location & Seq

Genomic Coordinates Reverse (-)

16071410 .. 16073502

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG196200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGAAGGCAACCTTGCTGTGACAAACTTGGGGTTAAGAAAGGGCCATGGACAGCCGAGGAGGATAAGAAGCTCATCAACTTCATTCTCACAAATGGCCAGTGTTGCTGGAGAGCTGTCCCCAAGCTCGCTGGGCTTCGCCGCTGTGGCAAGAGTTGCAGACTCCGTTGGACCAACTATCTCCGTCCCGACTTGAAGAGAGGCCTCCTTACAGAATCTGAAGAACAGTTGGTCATTGATCTCCATGCTCGTCTCGGAAATAGGTATCTGTGTATATATAGGTGGTCCAAGATTGCAGCCAGATTGCCAGGGAGGACTGATAATGAAATCAAGAATCACTGGAACACCCACATCAAGAAAAAGCTGCTTAGAATGGGAATTGATCCCGTCACGCATGAACCCCTCCACAAAGATCAAGATGACTTGATCAACAAGGAAACTATTATTTCATCCCATACTAATCAAGCTAACAATAACTTGCCTCAATCTACAACTGAAAATTCATCTTCAAACTCATCACCAGCTGAGAATTCATCATCAAGCTCATCACCAAATGAAAATTCTTCTGGAGACGACCAATCGACTTTAATTGATAGCATTTGCAACGTTGACGAGTCGTTGATGAACAGTCTTTGGGTGGATGAAACTCCGCTAATCGATGCATTGTGGAACAGTGATCAATTACCAGATGGAGCAAATTACATCGAAAATGGCATGGGAGTGCAATCTAATTGGGAGGAGAATTGCTCATGGCTTTTGGACTGCCAAGACTTTGGCGTTCATGATTTCGGTATGGATTGCTTCATCGAAACCGAATTAAATGCCCTCGACACATTAGGGATGGAGAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

284

Amino Acids

32.1

Weight (kDa)

5.14

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.2e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 117	2e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22680
fragaria_vesca	FvH4_5g00480 FvH4_7g27910
malus_domestica	MD00G1104700.v1.1 MD04G1080600.v1.1 MD07G1256200.v1.1
prunus_persica	Prupe.2G280100_v2.0.a1 Prupe.5G077500_v2.0.a1
pyrus_communis	pycom01g19580 pycom04g07290 pycom07g22910
rosa_chinensis	RchiOBHm_Chr1g0374861 RchiOBHm_Chr7g0202031
rosa_laevigata	RLG00000003632 RLG00000026711
rosa_multiflora	Rmu_sc0004947.1_g000027 Rmu_sc0006592.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254920 Rroxscaffold_4G00283220
rosa_rugosa	Rorug01G0385400 Rorug07G0067400
rosa_samantha	Rh1AG397000 Rh1BG360800 Rh1CG374500 Rh7AG194700 Rh7BG196200 Rh7CG206000 Rh7DG201400
rosa_wichuraiana	Rw1G035200 Rw7G017060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	142, 650
AclI	AACGTT	1 cut(s)	606
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	499, 529, 559, 849
AcuI	CTGAAG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	196, 510
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	544, 576
AluBI	AGCT	7 cut(s)	73, 116, 127, 364, 467, 524, 543
AluI	AGCT	7 cut(s)	73, 116, 127, 364, 467, 524, 543
Alw26I	GTCTC	2 cut(s)	257, 564
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	3 cut(s)	44, 97, 202
ApeKI	GCWGC	2 cut(s)	296, 364
ApoI	RAATTY	4 cut(s)	499, 529, 559, 849
AspS9I	GGNCC	3 cut(s)	44, 171, 285
AsuHPI	GGTGA	2 cut(s)	510, 540
AvaII	GGWCC	2 cut(s)	171, 285
BalI	TGGCCA	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	308, 351
BccI	CCATC	2 cut(s)	683, 835
BcgI	CGANNNNNNTGC	2 cut(s)	803, 837
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	2 cut(s)	426, 676
BcoDI	GTCTC	2 cut(s)	257, 564
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	3 cut(s)	142, 297, 365
BlsI	GCNGC	3 cut(s)	143, 298, 366
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	171, 285
BmgT120I	GGNCC	3 cut(s)	44, 171, 285
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	649
BplI	GAGNNNNNCTC	2 cut(s)	731, 763
BpmI	CTGGAG	2 cut(s)	130, 588
Bsa29I	ATCGAT	1 cut(s)	657
BsaJI	CCNNGG	3 cut(s)	47, 57, 308
Bse1I	ACTGG	2 cut(s)	100, 344
BseBI	CCWGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	47, 57, 308
BseGI	GGATG	3 cut(s)	449, 646, 846
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	100, 344
BseRI	GAGGAG	2 cut(s)	74, 752
BseXI	GCAGC	2 cut(s)	308, 351
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	46, 99, 204
BshVI	ATCGAT	1 cut(s)	657
BslFI	GGGAC	2 cut(s)	104, 171
BsmAI	GTCTC	2 cut(s)	257, 564
BsmBI	CGTCTC	2 cut(s)	257, 564
BsmFI	GGGAC	2 cut(s)	104, 171
BsnI	GGCC	3 cut(s)	46, 99, 204
Bsp143I	GATC	5 cut(s)	238, 382, 412, 426, 676
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	142, 650
BspANI	GGCC	3 cut(s)	46, 99, 204
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	657
BspHI	TCATGA	1 cut(s)	781
BspPI	GGATC	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	100, 344
BssECI	CCNNGG	3 cut(s)	47, 57, 308
BssMI	GATC	5 cut(s)	238, 382, 412, 426, 676
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	228, 629, 674
Bst6I	CTCTTC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	368, 525
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	449, 646, 846
BstKTI	GATC	5 cut(s)	241, 385, 415, 429, 679
BstMAI	GTCTC	2 cut(s)	257, 564
BstMBI	GATC	5 cut(s)	238, 382, 412, 426, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 133, 147, 156
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	308, 351
BstXI	CCANNNNNNTGG	1 cut(s)	773
Bsu15I	ATCGAT	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	46, 99, 204
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	449, 646, 846
BtsIMutI	CAGTG	3 cut(s)	107, 337, 679
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	781
Cfr13I	GGNCC	3 cut(s)	44, 171, 285
ClaI	ATCGAT	1 cut(s)	657
CviAII	CATG	6 cut(s)	48, 245, 395, 715, 750, 782
DdeI	CTNAG	2 cut(s)	368, 525
DpnI	GATC	5 cut(s)	240, 384, 414, 428, 678
DpnII	GATC	5 cut(s)	238, 382, 412, 426, 676
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	171, 285
Eco57I	CTGAAG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	2 cut(s)	257, 564
FaeI	CATG	6 cut(s)	51, 248, 398, 718, 753, 785
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	104, 171
FatI	CATG	6 cut(s)	47, 244, 394, 714, 749, 781
FbaI	TGATCA	2 cut(s)	426, 676
Fnu4HI	GCNGC	3 cut(s)	142, 297, 365
FokI	GGATG	2 cut(s)	436, 653
Fsp4HI	GCNGC	3 cut(s)	142, 297, 365
GluI	GCNGC	3 cut(s)	142, 297, 365
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	130, 588
HaeIII	GGCC	3 cut(s)	46, 99, 204
Hin1II	CATG	6 cut(s)	51, 248, 398, 718, 753, 785
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	162, 215, 334, 614
HphI	GGTGA	2 cut(s)	510, 540
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	220, 257
Hpy188III	TCNNGA	6 cut(s)	188, 331, 355, 416, 567, 782
Hpy8I	GTNNAC	1 cut(s)	610
HpyCH4III	ACNGT	3 cut(s)	228, 629, 674
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	5 cut(s)	159, 296, 603, 662, 724
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 133, 147, 156
HpyF3I	CTNAG	2 cut(s)	368, 525
HpySE526I	ACGT	1 cut(s)	606
Hsp92II	CATG	6 cut(s)	51, 248, 398, 718, 753, 785
Ksp22I	TGATCA	2 cut(s)	426, 676
Kzo9I	GATC	5 cut(s)	238, 382, 412, 426, 676
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	2 cut(s)	308, 351
LweI	GCATC	1 cut(s)	649
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	2 cut(s)	20, 388
MalI	GATC	5 cut(s)	240, 384, 414, 428, 678
MboI	GATC	5 cut(s)	238, 382, 412, 426, 676
MboII	GAAGA	4 cut(s)	208, 233, 498, 555
MlsI	TGGCCA	1 cut(s)	99
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	156, 623
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	52, 55, 194, 215, 306, 413, 492, 730, 836
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	36, 587, 818, 853
MslI	CAYNNNNRTG	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	144, 524
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	4 cut(s)	105, 133, 147, 156
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	5 cut(s)	238, 382, 412, 426, 676
NlaIII	CATG	6 cut(s)	51, 248, 398, 718, 753, 785
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	20, 388
NsiI	ATGCAT	1 cut(s)	664
PagI	TCATGA	1 cut(s)	781
PceI	AGGCCT	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	215, 334
PkrI	GCNGC	3 cut(s)	143, 298, 366
PleI	GAGTC	2 cut(s)	156, 622
PpsI	GAGTC	2 cut(s)	156, 622
Psp1406I	AACGTT	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	307
PspPI	GGNCC	3 cut(s)	44, 171, 285
PstNI	CAGNNNCTG	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	719
SaqAI	TTAA	4 cut(s)	36, 587, 818, 853
SatI	GCNGC	3 cut(s)	142, 297, 365
Sau3AI	GATC	5 cut(s)	238, 382, 412, 426, 676
Sau96I	GGNCC	3 cut(s)	44, 171, 285
SchI	GAGTC	2 cut(s)	156, 623
ScrFI	CCNGG	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	2 cut(s)	171, 285
SmiMI	CAYNNNNRTG	1 cut(s)	719
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	2 cut(s)	142, 650
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	3 cut(s)	228, 629, 674
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	5 cut(s)	581, 657, 705, 807, 828
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	215, 334
Tru1I	TTAA	4 cut(s)	36, 587, 818, 853
Tru9I	TTAA	4 cut(s)	36, 587, 818, 853
TscAI	CASTG	3 cut(s)	107, 344, 679
TseFI	GTSAC	2 cut(s)	20, 388
TseI	GCWGC	2 cut(s)	296, 364
Tsp45I	GTSAC	2 cut(s)	20, 388
TspGWI	ACGGA	2 cut(s)	155, 173
TspRI	CASTG	3 cut(s)	107, 344, 679
VpaK11BI	GGWCC	2 cut(s)	171, 285
XapI	RAATTY	4 cut(s)	499, 529, 559, 849
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.