Rh1BG360800
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005146
Physical Location & Seq
Forward (+)
49114097 .. 49115474
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG360800.1

Sequence Viewer

Length: 750 bp
ATGGGCAGGCAACCTTGTTGTGACAAGCTTGGCGTCAAGAAAGGTCCATGGACAGCCGAGGAAGACAAGAAACTAGTGAACTTCATCCTCACTCATGGCCAATGCTGCTGGCGCGCCGTCCCCAAGCTCGCGGGTCTGCGCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGACTAACTATCTCCGGCCCGACTTGAAGCGAGGGCTACTCAATGAAGCTGAGGAGCAGCTTGTTATTGACCTCCATGCTAGTCTTGGCAATAGGTGGTCTAAAATTGCAGCAAGACTGCCTGGAAGAACAGACAATGAGATCAAGAATCACTGGAATACACACATCAAGAAAAAACTTATCAAGATGGGGATTGATCCAATTACTCATGCGCCTCTCCAAAAACAAGTCACTACAACCCCACAAGAAACGCCTTGTGAAGCCAATATTCAACAAAGTGTGAACATACCGGAGCATGGAATCTCTGGCAACGAAAATGGCAGCTCTGCAACTGAGAATTCGTCAAGCAATGAAGCTCAGTCACTAATTGAGGTCAATGCCAATGGTGACGATGACCCTTTGGTGAGTTACATATTATCCGATACATTTCTCCAGGATTGGTCATGGAATTTTCCGGCTGTGGAAGACAATTACAGTGATCTTGGCTTGTCTTCAACTTCATCAGAGGATAGCTCAGCTTGGTTTATGGACTGCAAGGATTTTGGGGTTGAGGATTTCGAGCTTGGAAATTGTATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

249

Amino Acids

27.85

Weight (kDa)

5.42

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.3e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 72 - 111 2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 115 5.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 114, 131
AciI CCGC 5 cut(s) 131, 142, 147, 160, 166
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 505, 616
AcyI GRCGYC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 3 cut(s) 196, 440, 663
AhlI ACTAGT 1 cut(s) 73
AjnI CCWGG 2 cut(s) 289, 600
AlwI GGATC 1 cut(s) 359
AoxI GGCC 2 cut(s) 97, 185
ApeKI GCWGC 6 cut(s) 105, 144, 156, 226, 278, 489
ApoI RAATTY 2 cut(s) 505, 616
AscI GGCGCGCC 1 cut(s) 112
AspLEI GCGC 4 cut(s) 114, 116, 141, 382
AspS9I GGNCC 2 cut(s) 44, 186
AsuHPI GGTGA 2 cut(s) 566, 583
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 99
BbsI GAAGAC 3 cut(s) 69, 639, 651
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 291, 602
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 2 cut(s) 74, 249
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
BlpI GCTNAGC 1 cut(s) 682
BlsI GCNGC 9 cut(s) 107, 143, 146, 149, 158, 161, 228, 280, 491
Bme1390I CCNGG 2 cut(s) 291, 602
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 44, 186
BmrFI CCNGG 2 cut(s) 291, 602
BpiI GAAGAC 3 cut(s) 69, 639, 651
BplI GAGNNNNNCTC 4 cut(s) 192, 224, 665, 697
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 682
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 47, 57
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 2 cut(s) 291, 602
BseDI CCNNGG 2 cut(s) 47, 57
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 4 cut(s) 210, 492, 539, 696
BseNI ACTGG 1 cut(s) 326
BsePI GCGCGC 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
Bsh1236I CGCG 2 cut(s) 114, 131
BshFI GGCC 2 cut(s) 99, 187
BsiSI CCGG 3 cut(s) 184, 458, 623
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 2 cut(s) 99, 187
Bsp143I GATC 3 cut(s) 309, 364, 646
Bsp1720I GCTNAGC 1 cut(s) 682
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 131, 142, 147, 160, 166
BspANI GGCC 2 cut(s) 99, 187
BspCNI CTCAG 4 cut(s) 211, 493, 538, 695
BspFNI CGCG 2 cut(s) 114, 131
BspPI GGATC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 47, 57
BssHII GCGCGC 1 cut(s) 112
BssMI GATC 3 cut(s) 309, 364, 646
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 291, 602
Bst4CI ACNGT 1 cut(s) 644
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 8, 110, 114, 129
BstDEI CTNAG 4 cut(s) 219, 501, 525, 682
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 2 cut(s) 114, 131
BstHHI GCGC 4 cut(s) 114, 116, 141, 382
BstKTI GATC 3 cut(s) 312, 367, 649
BstMBI GATC 3 cut(s) 309, 364, 646
BstMWI GCNNNNNNNGC 6 cut(s) 105, 111, 147, 153, 156, 165
BstNI CCWGG 2 cut(s) 291, 602
BstSCI CCNGG 2 cut(s) 289, 600
BstUI CGCG 2 cut(s) 114, 131
BstV1I GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
BstV2I GAAGAC 3 cut(s) 69, 639, 651
BsuRI GGCC 2 cut(s) 99, 187
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 319, 649
Cac8I GCNNGC 4 cut(s) 8, 110, 114, 129
CfoI GCGC 4 cut(s) 114, 116, 141, 382
Cfr13I GGNCC 2 cut(s) 44, 186
CseI GACGC 1 cut(s) 22
CviAII CATG 6 cut(s) 48, 95, 245, 377, 464, 612
DdeI CTNAG 4 cut(s) 219, 501, 525, 682
DpnI GATC 3 cut(s) 311, 366, 648
DpnII GATC 3 cut(s) 309, 364, 646
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 289, 600
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 6 cut(s) 51, 98, 248, 380, 467, 615
FaiI YATR 9 cut(s) 49, 96, 246, 378, 455, 465, 581, 613, 695
FaqI GGGAC 1 cut(s) 104
FatI CATG 6 cut(s) 47, 94, 244, 376, 463, 611
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
FspBI CTAG 2 cut(s) 74, 249
GlaI GCGC 4 cut(s) 113, 115, 140, 381
GluI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 2 cut(s) 99, 187
HapII CCGG 3 cut(s) 184, 458, 623
HgaI GACGC 1 cut(s) 22
HhaI GCGC 4 cut(s) 114, 116, 141, 382
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 6 cut(s) 51, 98, 248, 380, 467, 615
Hin6I GCGC 4 cut(s) 112, 114, 139, 380
HinP1I GCGC 4 cut(s) 112, 114, 139, 380
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 316, 468
HpaII CCGG 3 cut(s) 184, 458, 623
HphI GGTGA 2 cut(s) 566, 583
Hpy166II GTNNAC 2 cut(s) 79, 451
Hpy188I TCNGA 2 cut(s) 589, 673
Hpy188III TCNNGA 4 cut(s) 37, 313, 337, 352
Hpy8I GTNNAC 2 cut(s) 79, 451
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4V TGCA 3 cut(s) 278, 497, 702
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 111, 147, 153, 156, 165
HpyF3I CTNAG 4 cut(s) 219, 501, 525, 682
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 6 cut(s) 51, 98, 248, 380, 467, 615
HspAI GCGC 4 cut(s) 112, 114, 139, 380
Kzo9I GATC 3 cut(s) 309, 364, 646
LmnI GCTCC 2 cut(s) 223, 460
Lsp1109I GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
MaeI CTAG 2 cut(s) 74, 249
MaeIII GTNAC 5 cut(s) 20, 397, 528, 554, 575
MalI GATC 3 cut(s) 311, 366, 648
MboI GATC 3 cut(s) 309, 364, 646
MboII GAAGA 4 cut(s) 74, 306, 644, 651
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 8 cut(s) 273, 369, 505, 534, 616, 637, 736, 745
MluNI TGGCCA 1 cut(s) 99
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 1 cut(s) 748
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 144, 168
MspI CCGG 3 cut(s) 184, 458, 623
MspR9I CCNGG 2 cut(s) 291, 602
MvaI CCWGG 2 cut(s) 291, 602
MvnI CGCG 2 cut(s) 114, 131
MwoI GCNNNNNNNGC 6 cut(s) 105, 111, 147, 153, 156, 165
NcoI CCATGG 1 cut(s) 47
NdeII GATC 3 cut(s) 309, 364, 646
NlaIII CATG 6 cut(s) 51, 98, 248, 380, 467, 615
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 4 cut(s) 20, 397, 528, 554
PalAI GGCGCGCC 1 cut(s) 112
PauI GCGCGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 316, 468
PfoI TCCNGGA 1 cut(s) 600
PkrI GCNGC 9 cut(s) 107, 143, 146, 149, 158, 161, 228, 280, 491
Psp6I CCWGG 2 cut(s) 289, 600
PspGI CCWGG 2 cut(s) 289, 600
PspPI GGNCC 2 cut(s) 44, 186
PteI GCGCGC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 748
SatI GCNGC 9 cut(s) 106, 142, 145, 148, 157, 160, 227, 279, 490
Sau3AI GATC 3 cut(s) 309, 364, 646
Sau96I GGNCC 2 cut(s) 44, 186
ScrFI CCNGG 2 cut(s) 291, 602
SgsI GGCGCGCC 1 cut(s) 112
SinI GGWCC 1 cut(s) 44
SpeI ACTAGT 1 cut(s) 73
Sse9I AATT 8 cut(s) 273, 369, 505, 534, 616, 637, 736, 745
SsiI CCGC 5 cut(s) 131, 142, 147, 160, 166
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 74, 249
StyD4I CCNGG 2 cut(s) 289, 600
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 644
TaqI TCGA 1 cut(s) 726
TasI AATT 8 cut(s) 273, 369, 505, 534, 616, 637, 736, 745
TauI GCSGC 3 cut(s) 144, 150, 162
TfiI GAWTC 2 cut(s) 316, 468
Tru1I TTAA 1 cut(s) 748
Tru9I TTAA 1 cut(s) 748
TscAI CASTG 2 cut(s) 326, 649
TseFI GTSAC 4 cut(s) 20, 397, 528, 554
TseI GCWGC 6 cut(s) 105, 144, 156, 226, 278, 489
Tsp45I GTSAC 4 cut(s) 20, 397, 528, 554
TspDTI ATGAA 4 cut(s) 73, 228, 534, 657
TspRI CASTG 2 cut(s) 326, 649
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 505, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XspI CTAG 2 cut(s) 74, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.