FvH4_7g27910
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005146
Physical Location & Seq
Forward (+)
20764627 .. 20766066
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27910.t1

Sequence Viewer

Length: 753 bp
ATGGGCAGGCAACCTTGTTGTGACAAGCTTGGTGTCAAGAAAGGTCCATGGACCGCCGAGGAGGACAAGAAATTGGTGAATTTCATCCTCACTCACGGTCAATGCTGCTGGCGCGCAGTCCCCAAGCTCGCCGGCCTGCGTCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGACTAATTATCTGCGGCCTGACTTGAAGCGAGGGCTACTCAATGAAGCTGAGGAGCAGCTTGTTATTGACCTCCATGCTAGTCTTGGCAATAGGTGGTCAAAAATTGCAGCAAGATTGCCTGGCAGAACAGACAATGAGATCAAGAATCACTGGAATACACACATCAAGAAAAAACTTATTAAGATGGGGATTGATCCAATTACTCATGTGCCTCTCCAAAAACAAGTCACTACAACCCCACAAGAAACGCCTTGTGAAGCCAATATTCAACAAAGTGTGAACATACCGGAGCACGGAGTCTCCGGCAACGAAAATGGCAGCTCTGCAACTGAGAATTCCACGAGCAATGAAGCTCAATCACTAATTGAGGCCGATGCTAACGTTGAAGATGACCCTTTGGTGAGTTACATATTATCTGATACGTTTCTAGAGGATTGGTCATGGAGTTTTCCAGCTGTGGAAGACGGTTACAATGATCTTGGCTTGTCTTCAACTTCATCAGAGGATAGCTCGTCAGCTTGGTTTATGGATTGTAAGGATTTTGGGGTTGAAGATTTCGAGCTTGGAAATTGTATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

251

Amino Acids

27.93

Weight (kDa)

5.21

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 3.4e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 72 - 111 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 115 5.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 114
AciI CCGC 5 cut(s) 54, 147, 160, 166, 184
AclI AACGTT 1 cut(s) 552
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 2 cut(s) 79, 505
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 5 cut(s) 196, 440, 557, 663, 722
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 1 cut(s) 359
AoxI GGCC 3 cut(s) 133, 185, 540
ApeKI GCWGC 6 cut(s) 105, 144, 156, 226, 278, 489
ApoI RAATTY 2 cut(s) 79, 505
AspLEI GCGC 2 cut(s) 114, 116
AspS9I GGNCC 2 cut(s) 44, 51
AsuHPI GGTGA 2 cut(s) 88, 583
AvaII GGWCC 2 cut(s) 44, 51
BauI CACGAG 1 cut(s) 511
BbsI GAAGAC 2 cut(s) 639, 651
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
BccI CCATC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 2 cut(s) 249, 599
BisI GCNGC 9 cut(s) 106, 145, 148, 157, 160, 185, 227, 279, 490
BlsI GCNGC 9 cut(s) 107, 146, 149, 158, 161, 186, 228, 280, 491
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 44, 51
BmgT120I GGNCC 2 cut(s) 44, 51
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 535
BpiI GAAGAC 2 cut(s) 639, 651
BplI GAGNNNNNCTC 4 cut(s) 192, 224, 665, 697
Bpu10I CCTNAGC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 47, 57
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 47, 57
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 2 cut(s) 210, 492
BseNI ACTGG 1 cut(s) 326
BsePI GCGCGC 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 74, 236
BseXI GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 135, 187, 542
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 3 cut(s) 132, 458, 474
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 3 cut(s) 135, 187, 542
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 3 cut(s) 309, 364, 646
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 54, 147, 160, 166, 184
BspANI GGCC 3 cut(s) 135, 187, 542
BspCNI CTCAG 2 cut(s) 211, 493
BspFNI CGCG 1 cut(s) 114
BspPI GGATC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 47, 57
BssHII GCGCGC 1 cut(s) 112
BssMI GATC 3 cut(s) 309, 364, 646
BssSI CACGAG 1 cut(s) 511
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 98, 638
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 6 cut(s) 8, 110, 114, 129, 133, 137
BstDEI CTNAG 2 cut(s) 219, 501
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 2 cut(s) 114, 116
BstKTI GATC 3 cut(s) 312, 367, 649
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 3 cut(s) 309, 364, 646
BstMWI GCNNNNNNNGC 5 cut(s) 111, 141, 153, 156, 165
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
BstV2I GAAGAC 2 cut(s) 639, 651
BsuRI GGCC 3 cut(s) 135, 187, 542
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 6 cut(s) 8, 110, 114, 129, 133, 137
CfoI GCGC 2 cut(s) 114, 116
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 44, 51
CseI GACGC 1 cut(s) 128
CviAII CATG 4 cut(s) 48, 245, 377, 612
DdeI CTNAG 2 cut(s) 219, 501
DpnI GATC 3 cut(s) 311, 366, 648
DpnII GATC 3 cut(s) 309, 364, 646
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 44, 51
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 51, 248, 380, 615
FaiI YATR 7 cut(s) 49, 246, 378, 455, 581, 613, 698
FaqI GGGAC 1 cut(s) 104
FatI CATG 4 cut(s) 47, 244, 376, 611
Fnu4HI GCNGC 9 cut(s) 106, 145, 148, 157, 160, 185, 227, 279, 490
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 9 cut(s) 106, 145, 148, 157, 160, 185, 227, 279, 490
FspBI CTAG 2 cut(s) 249, 599
GlaI GCGC 2 cut(s) 113, 115
GluI GCNGC 9 cut(s) 106, 145, 148, 157, 160, 185, 227, 279, 490
HaeIII GGCC 3 cut(s) 135, 187, 542
HapII CCGG 3 cut(s) 132, 458, 474
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 114, 116
Hin1II CATG 4 cut(s) 51, 248, 380, 615
Hin6I GCGC 2 cut(s) 112, 114
HinP1I GCGC 2 cut(s) 112, 114
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 316, 468
HpaII CCGG 3 cut(s) 132, 458, 474
HphI GGTGA 2 cut(s) 88, 583
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 589, 673
Hpy188III TCNNGA 4 cut(s) 37, 313, 337, 599
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 98, 638
HpyCH4IV ACGT 2 cut(s) 552, 593
HpyCH4V TGCA 2 cut(s) 278, 497
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 141, 153, 156, 165
HpyF3I CTNAG 2 cut(s) 219, 501
HpySE526I ACGT 2 cut(s) 552, 593
Hsp92II CATG 4 cut(s) 51, 248, 380, 615
HspAI GCGC 2 cut(s) 112, 114
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 309, 364, 646
LmnI GCTCC 2 cut(s) 223, 460
Lsp1109I GCAGC 6 cut(s) 92, 131, 143, 238, 290, 501
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 249, 599
MaeII ACGT 2 cut(s) 552, 593
MaeIII GTNAC 4 cut(s) 20, 397, 575, 638
MalI GATC 3 cut(s) 311, 366, 648
MboI GATC 3 cut(s) 309, 364, 646
MboII GAAGA 4 cut(s) 569, 644, 651, 734
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 9 cut(s) 71, 79, 175, 273, 369, 505, 534, 739, 748
MlyI GAGTC 1 cut(s) 477
MroNI GCCGGC 1 cut(s) 131
MseI TTAA 2 cut(s) 351, 751
MspA1I CMGCKG 2 cut(s) 168, 626
MspI CCGG 3 cut(s) 132, 458, 474
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 5 cut(s) 111, 141, 153, 156, 165
NaeI GCCGGC 1 cut(s) 133
NcoI CCATGG 1 cut(s) 47
NdeII GATC 3 cut(s) 309, 364, 646
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 4 cut(s) 51, 248, 380, 615
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 20, 397
PauI GCGCGC 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 9 cut(s) 107, 146, 149, 158, 161, 186, 228, 280, 491
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 2 cut(s) 44, 51
PteI GCGCGC 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 626
SaqAI TTAA 2 cut(s) 351, 751
SatI GCNGC 9 cut(s) 106, 145, 148, 157, 160, 185, 227, 279, 490
Sau3AI GATC 3 cut(s) 309, 364, 646
Sau96I GGNCC 2 cut(s) 44, 51
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 1 cut(s) 535
SinI GGWCC 2 cut(s) 44, 51
Sse9I AATT 9 cut(s) 71, 79, 175, 273, 369, 505, 534, 739, 748
SsiI CCGC 5 cut(s) 54, 147, 160, 166, 184
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 249, 599
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 98, 638
TaiI ACGT 2 cut(s) 555, 596
TaqI TCGA 1 cut(s) 729
TasI AATT 9 cut(s) 71, 79, 175, 273, 369, 505, 534, 739, 748
TauI GCSGC 3 cut(s) 150, 162, 187
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 351, 751
Tru9I TTAA 2 cut(s) 351, 751
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 2 cut(s) 20, 397
TseI GCWGC 6 cut(s) 105, 144, 156, 226, 278, 489
Tsp45I GTSAC 2 cut(s) 20, 397
TspDTI ATGAA 4 cut(s) 73, 228, 534, 657
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 44, 51
XapI RAATTY 2 cut(s) 79, 505
XbaI TCTAGA 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XspI CTAG 2 cut(s) 249, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.