pycom04g07290
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0005146
Physical Location & Seq
Reverse (-)
7701699 .. 7702205
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g07290.1

Sequence Viewer

Length: 507 bp
ATGGGAATTGATCCTGTCACACATGAACCCCTCCACAAAGAAGAAGAGTTGCCGTCCAGTATTAAAGAAACTAACTCATCATCATCATCGTCACATGATCATGATGATCATAACAATAATTTGCCAGCTGATCAGTCTACAAATGATCTTCACAATTCACAAGAAAATGATCAAAGCGTGGTGAATTCATCAGGATCGGAGGAAATAAACTCATCGACCGAAAACTCCTCCACAGGCGCTGAATCGGTGTTGTTAAACAACATTTGCAATGACGATTCGTTAATGAACAGCCTGTGGATGGATGAAACACCTCTGATTGATGCATTGTGGAACGACAACAATCAAGTAGAACTTGATCGATCCAAGGAGGGATCGATTACAATATCATTGAGAATAATGGAATGGGATTCCAATCTAATTGGGAGGACAATTGTGCATGGCTTTTGGACTGCCAAGACTTTGGTATTCATGATTTTGGTATGGATTGCTTCAATGATGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

169

Amino Acids

18.81

Weight (kDa)

4.32

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AclWI GGATC 4 cut(s) 5, 202, 354, 379
AcsI RAATTY 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 1 cut(s) 492
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 4 cut(s) 5, 202, 354, 379
AlwNI CAGNNNCTG 1 cut(s) 239
ApoI RAATTY 1 cut(s) 184
AspLEI GCGC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 193
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 37
BclI TGATCA 4 cut(s) 97, 106, 130, 169
BfoI RGCGCY 1 cut(s) 240
BmsI GCATC 1 cut(s) 310
Bsa29I ATCGAT 2 cut(s) 358, 374
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 411
BseCI ATCGAT 2 cut(s) 358, 374
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 2 cut(s) 303, 307
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 219
BshVI ATCGAT 2 cut(s) 358, 374
BsiEI CGRYCG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 298
BspDI ATCGAT 2 cut(s) 358, 374
BspHI TCATGA 2 cut(s) 100, 468
BspPI GGATC 4 cut(s) 5, 202, 354, 379
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 2 cut(s) 303, 307
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstMCI CGRYCG 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 460
Bsu15I ATCGAT 2 cut(s) 358, 374
BsuTUI ATCGAT 2 cut(s) 358, 374
BtsCI GGATG 2 cut(s) 303, 307
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 239
CciI TCATGA 2 cut(s) 100, 468
CfoI GCGC 1 cut(s) 239
ClaI ATCGAT 2 cut(s) 358, 374
CviAII CATG 5 cut(s) 23, 95, 101, 437, 469
CviJI RGCY 3 cut(s) 128, 291, 441
CviKI_1 RGCY 3 cut(s) 128, 291, 441
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 5 cut(s) 26, 98, 104, 440, 472
FaiI YATR 7 cut(s) 24, 96, 102, 111, 438, 470, 481
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 5 cut(s) 22, 94, 100, 436, 468
FbaI TGATCA 4 cut(s) 97, 106, 130, 169
FblI GTMKAC 1 cut(s) 137
FokI GGATG 2 cut(s) 310, 314
GlaI GCGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 240
HhaI GCGC 1 cut(s) 239
Hin1II CATG 5 cut(s) 26, 98, 104, 440, 472
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 3 cut(s) 242, 275, 407
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 199, 315
Hpy188III TCNNGA 3 cut(s) 101, 192, 469
Hpy8I GTNNAC 1 cut(s) 138
HpyCH4V TGCA 3 cut(s) 267, 323, 436
Hsp92II CATG 5 cut(s) 26, 98, 104, 440, 472
HspAI GCGC 1 cut(s) 237
Ksp22I TGATCA 4 cut(s) 97, 106, 130, 169
LpnPI CCDG 6 cut(s) 27, 70, 138, 177, 219, 305
LweI GCATC 1 cut(s) 310
MaeIII GTNAC 2 cut(s) 16, 90
MboII GAAGA 3 cut(s) 53, 56, 140
MfeI CAATTG 1 cut(s) 429
MluCI AATT 6 cut(s) 6, 118, 154, 184, 417, 429
MnlI CCTC 6 cut(s) 41, 193, 238, 321, 361, 417
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 3 cut(s) 63, 254, 281
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 128
MunI CAATTG 1 cut(s) 429
NlaIII CATG 5 cut(s) 26, 98, 104, 440, 472
NmuCI GTSAC 2 cut(s) 16, 90
NsiI ATGCAT 1 cut(s) 325
PagI TCATGA 2 cut(s) 100, 468
PfeI GAWTC 3 cut(s) 242, 275, 407
PstNI CAGNNNCTG 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 3 cut(s) 63, 254, 281
SetI ASST 2 cut(s) 130, 313
SfaNI GCATC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 6 cut(s) 6, 118, 154, 184, 417, 429
StyI CCWWGG 1 cut(s) 363
TaqI TCGA 3 cut(s) 215, 358, 374
TaqII GACCGA 1 cut(s) 233
TasI AATT 6 cut(s) 6, 118, 154, 184, 417, 429
TfiI GAWTC 3 cut(s) 242, 275, 407
Tru1I TTAA 3 cut(s) 63, 254, 281
Tru9I TTAA 3 cut(s) 63, 254, 281
TseFI GTSAC 2 cut(s) 16, 90
Tsp45I GTSAC 2 cut(s) 16, 90
TspDTI ATGAA 5 cut(s) 39, 177, 299, 318, 457
XapI RAATTY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.