AT4G25570

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007411
Physical Location & Seq
Reverse (-)
13053661 .. 13055800
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25570.1

Sequence Viewer

Length: 720 bp
ATGGCTGTCCGGATAAACGCGATGGCGGTGACGTTTGTGGCGCACGCGCTGGCGGTAATAGCGGCGATTATGGTACTGGTTTGGAGTATCAGTTACAGAGGTGGATTGGCCTGGGAAGCTACTAACAAGAATCTCATCTTCAATCTGCATCCTGTTCTGATGCTCATCGGATTTATAATCTTGGGAGGAGAAGCCATCATAAGTTACAAATCGCTTCCGCTGGAGAAACCAGTGAAGAAGTTGATCCACCTTATACTCCATGCCATTGCTCTGGCTCTTGGGATATTTGGCATCTGTGCAGCCTTTAAGAACCACAATGAAAGCCATATCCCTAATCTCTACAGTCTCCATTCCTGGATTGGTATTGGAGTCATTTCTCTTTATGGCTTCCAGTGGGTGTACAGCTTCATAGTGTTCTTCTTCCCAGGAGGATCAACAAATTTGAAAAGCGGATTGCTTCCGTGGCACGCAATGCTTGGCCTGTTTGTTTACATACTTGCTGTCGGGAATGCAGCTTTAGGGTTTCTGGAAAAGCTGACTTTCTTGGAGAATGGAGGGCTTGACAAGTATGGATCCGAAGCATTTCTTATCAACTTCACGGCCATTATCACTATTCTCTTTGGTGCCTTTGTGGTACTCACTGCTTCTGCTGAGTCTCCTTCTCCTTCTCCTTCCGTCTCCAATGATGATAGTGTTGACTTCAGTTATTCTGCTATATAA

Protein Analysis

239

Amino Acids

25.86

Weight (kDa)

6.7

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 49 - 181 8.9e-48 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 623
AccII CGCG 2 cut(s) 20, 47
AccIII TCCGGA 1 cut(s) 9
AciI CCGC 5 cut(s) 26, 53, 62, 218, 450
AclWI GGATC 4 cut(s) 238, 439, 567, 580
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 685
AfaI GTAC 3 cut(s) 75, 401, 636
AgsI TTSAA 2 cut(s) 142, 445
AjnI CCWGG 3 cut(s) 110, 353, 424
AluBI AGCT 4 cut(s) 119, 405, 515, 535
AluI AGCT 4 cut(s) 119, 405, 515, 535
Alw26I GTCTC 3 cut(s) 350, 660, 682
AlwI GGATC 4 cut(s) 238, 439, 567, 580
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 3 cut(s) 108, 478, 600
ApeKI GCWGC 2 cut(s) 299, 512
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 2 cut(s) 43, 49
AsuHPI GGTGA 1 cut(s) 40
BamHI GGATCC 1 cut(s) 572
BanI GGYRCC 1 cut(s) 623
BbvI GCAGC 2 cut(s) 311, 524
BccI CCATC 2 cut(s) 16, 203
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 3 cut(s) 112, 355, 426
BcoDI GTCTC 3 cut(s) 350, 660, 682
BfmI CTRYAG 1 cut(s) 340
BisI GCNGC 3 cut(s) 63, 300, 513
BlsI GCNGC 3 cut(s) 64, 301, 514
Bme1390I CCNGG 3 cut(s) 112, 355, 426
BmiI GGNNCC 2 cut(s) 574, 625
BmrFI CCNGG 3 cut(s) 112, 355, 426
BmsI GCATC 3 cut(s) 150, 157, 300
BpmI CTGGAG 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 111, 424, 461
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bse1I ACTGG 3 cut(s) 81, 230, 391
Bse3DI GCAATG 2 cut(s) 264, 477
Bse8I GATNNNNATC 1 cut(s) 164
BseAI TCCGGA 1 cut(s) 9
BseBI CCWGG 3 cut(s) 112, 355, 426
BseDI CCNNGG 3 cut(s) 111, 424, 461
BseGI GGATG 1 cut(s) 148
BseJI GATNNNNATC 1 cut(s) 164
BseMI GCAATG 2 cut(s) 264, 477
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 3 cut(s) 81, 230, 391
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 311, 524
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 2 cut(s) 20, 47
BshFI GGCC 3 cut(s) 110, 480, 602
BshNI GGYRCC 1 cut(s) 623
BsiSI CCGG 1 cut(s) 10
BsmAI GTCTC 3 cut(s) 350, 660, 682
BsmBI CGTCTC 1 cut(s) 682
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 3 cut(s) 110, 480, 602
Bsp13I TCCGGA 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 3 cut(s) 243, 431, 572
BspACI CCGC 5 cut(s) 26, 53, 62, 218, 450
BspANI GGCC 3 cut(s) 110, 480, 602
BspCNI CTCAG 1 cut(s) 643
BspEI TCCGGA 1 cut(s) 9
BspFNI CGCG 2 cut(s) 20, 47
BspLI GGNNCC 2 cut(s) 574, 625
BspPI GGATC 4 cut(s) 238, 439, 567, 580
BspT107I GGYRCC 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 264, 477
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 3 cut(s) 81, 230, 391
BssECI CCNNGG 3 cut(s) 111, 424, 461
BssMI GATC 3 cut(s) 243, 431, 572
Bst2UI CCWGG 3 cut(s) 112, 355, 426
Bst4CI ACNGT 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 472
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 45, 51, 468
BstDEI CTNAG 1 cut(s) 651
BstDSI CCRYGG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 2 cut(s) 20, 47
BstHHI GCGC 2 cut(s) 43, 49
BstKTI GATC 3 cut(s) 246, 434, 575
BstMAI GTCTC 3 cut(s) 350, 660, 682
BstMBI GATC 3 cut(s) 243, 431, 572
BstMWI GCNNNNNNNGC 4 cut(s) 59, 116, 463, 472
BstNI CCWGG 3 cut(s) 112, 355, 426
BstSCI CCNGG 3 cut(s) 110, 353, 424
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 2 cut(s) 20, 47
BstV1I GCAGC 2 cut(s) 311, 524
BstX2I RGATCY 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 3 cut(s) 110, 480, 602
BtgI CCRYGG 1 cut(s) 461
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 3 cut(s) 237, 398, 639
Cac8I GCNNGC 3 cut(s) 45, 51, 468
CfoI GCGC 2 cut(s) 43, 49
Csp6I GTAC 3 cut(s) 74, 400, 635
CviAII CATG 1 cut(s) 260
CviQI GTAC 3 cut(s) 74, 400, 635
DdeI CTNAG 1 cut(s) 651
DpnI GATC 3 cut(s) 245, 433, 574
DpnII GATC 3 cut(s) 243, 431, 572
EaeI YGGCCR 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 110, 353, 424
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 1 cut(s) 263
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 63, 300, 513
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 63, 300, 513
GlaI GCGC 2 cut(s) 42, 48
GluI GCNGC 3 cut(s) 63, 300, 513
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 3 cut(s) 110, 480, 602
HapII CCGG 1 cut(s) 10
HhaI GCGC 2 cut(s) 43, 49
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 2 cut(s) 41, 47
HinP1I GCGC 2 cut(s) 41, 47
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 3 cut(s) 130, 369, 653
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 400, 490, 697
Hpy188I TCNGA 3 cut(s) 159, 170, 577
Hpy188III TCNNGA 3 cut(s) 10, 505, 527
Hpy8I GTNNAC 3 cut(s) 400, 490, 697
HpyAV CCTTC 3 cut(s) 669, 675, 681
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 148, 299, 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 116, 463, 472
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 2 cut(s) 41, 47
Kpn2I TCCGGA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 243, 431, 572
Lsp1109I GCAGC 2 cut(s) 311, 524
LweI GCATC 3 cut(s) 150, 157, 300
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 3 cut(s) 28, 92, 203
MalI GATC 3 cut(s) 245, 433, 574
MboI GATC 3 cut(s) 243, 431, 572
MboII GAAGA 4 cut(s) 130, 247, 409, 412
MflI RGATCY 1 cut(s) 572
MluCI AATT 1 cut(s) 439
MlyI GAGTC 2 cut(s) 378, 662
MnlI CCTC 4 cut(s) 92, 179, 422, 548
MroI TCCGGA 1 cut(s) 9
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 3 cut(s) 112, 355, 426
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 3 cut(s) 112, 355, 426
MvnI CGCG 2 cut(s) 20, 47
MwoI GCNNNNNNNGC 4 cut(s) 59, 116, 463, 472
NdeII GATC 3 cut(s) 243, 431, 572
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 574, 625
NmuCI GTSAC 1 cut(s) 28
PctI GAATGC 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 353
PkrI GCNGC 3 cut(s) 64, 301, 514
PleI GAGTC 2 cut(s) 377, 661
PpsI GAGTC 2 cut(s) 377, 661
PsiI TTATAA 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 110, 353, 424
PspGI CCWGG 3 cut(s) 110, 353, 424
PspN4I GGNNCC 2 cut(s) 574, 625
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 3 cut(s) 75, 401, 636
RsaNI GTAC 3 cut(s) 74, 400, 635
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 63, 300, 513
Sau3AI GATC 3 cut(s) 243, 431, 572
SchI GAGTC 2 cut(s) 378, 662
ScrFI CCNGG 3 cut(s) 112, 355, 426
SetI ASST 7 cut(s) 35, 103, 121, 252, 407, 517, 537
SfaNI GCATC 3 cut(s) 150, 157, 300
SfcI CTRYAG 1 cut(s) 340
Sse9I AATT 1 cut(s) 439
SsiI CCGC 5 cut(s) 26, 53, 62, 218, 450
StyD4I CCNGG 3 cut(s) 110, 353, 424
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 35
TasI AATT 1 cut(s) 439
TatI WGTACW 1 cut(s) 399
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 3 cut(s) 237, 398, 646
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 299, 512
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 333, 397
TspGWI ACGGA 2 cut(s) 450, 664
TspRI CASTG 3 cut(s) 237, 398, 646
XapI RAATTY 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.