Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Forward (+)

3697458 .. 3700733

Gene Structure 3276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCGGCCATAGGAGTATCATCGACTCCATTGACGTTTGTAGTGCACGCGCTTGGAGTCGCGGCTTTGGTCCTGGTTCTGGTTTGGTCCATATACTTCAGGGGCGGTTTCGCGTGCATGGGAAGCCACCGACAAGAGCCTCATCTTCAACCCATTATCAGTTATAGATACCTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTCGGTATAATTGGCATTTATACTGCATTCAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTCTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTCTTCTACCCAAAAGGAAGTCCAGGGCTGAGAAGTGACTCAGTTCCATGGAATGTGCTTTTTGGGCTTCTCGTGTACATTTTGGTTGTCGGCAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGCTCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCTTTTGTGATATTCTCGGTCATTTCTCAGGGTCCTGTAGAAGAAGACCACAGCTACTTAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

216

Amino Acids

23.75

Weight (kDa)

7.09

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B561	PF03188	52 - 167	1.7e-36	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	50, 62, 113
AciI	CCGC	2 cut(s)	62, 105
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	11, 79
AgsI	TTSAA	2 cut(s)	149, 265
AjnI	CCWGG	4 cut(s)	72, 207, 311, 394
AluBI	AGCT	3 cut(s)	493, 510, 636
AluI	AGCT	3 cut(s)	493, 510, 636
Alw21I	GWGCWC	3 cut(s)	48, 207, 512
Alw26I	GTCTC	1 cut(s)	272
Alw44I	GTGCAC	2 cut(s)	44, 203
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	2 cut(s)	44, 203
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	70, 87, 614
AvaII	GGWCC	3 cut(s)	70, 87, 614
BaeGI	GKGCMC	2 cut(s)	48, 207
BanII	GRGCYC	1 cut(s)	512
BauI	CACGAG	2 cut(s)	443, 572
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	3 cut(s)	48, 207, 512
BciT130I	CCWGG	4 cut(s)	74, 209, 313, 396
BcoDI	GTCTC	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	298, 618
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	74, 209, 313, 396
Bme18I	GGWCC	3 cut(s)	70, 87, 614
BmgT120I	GGNCC	3 cut(s)	70, 87, 614
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	4 cut(s)	74, 209, 313, 396
BmrI	ACTGGG	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	524
BsaJI	CCNNGG	3 cut(s)	395, 419, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 79
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	4 cut(s)	74, 209, 313, 396
BseDI	CCNNGG	3 cut(s)	395, 419, 474
BseLI	CCNNNNNNNGG	2 cut(s)	11, 79
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	4 cut(s)	392, 426, 525, 623
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	2 cut(s)	48, 207
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	3 cut(s)	50, 62, 113
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	3 cut(s)	48, 207, 512
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	11, 79
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	48, 207, 512
Bsp1407I	TGTACA	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	2 cut(s)	62, 105
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	4 cut(s)	393, 425, 524, 622
BspFNI	CGCG	3 cut(s)	50, 62, 113
BspLI	GGNNCC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	395, 419, 474
BssSI	CACGAG	2 cut(s)	443, 572
BssT1I	CCWWGG	2 cut(s)	419, 474
Bst2BI	CACGAG	2 cut(s)	443, 572
Bst2UI	CCWGG	4 cut(s)	74, 209, 313, 396
Bst4CI	ACNGT	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	447
BstC8I	GCNNGC	3 cut(s)	6, 48, 115
BstDEI	CTNAG	5 cut(s)	401, 412, 511, 609, 640
BstDSI	CCRYGG	1 cut(s)	419
BstFNI	CGCG	3 cut(s)	50, 62, 113
BstHHI	GCGC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 436
BstNI	CCWGG	4 cut(s)	74, 209, 313, 396
BstSCI	CCNGG	4 cut(s)	72, 207, 311, 394
BstSFI	CTRYAG	2 cut(s)	298, 618
BstSLI	GKGCMC	2 cut(s)	48, 207
BstUI	CGCG	3 cut(s)	50, 62, 113
BstV2I	GAAGAC	1 cut(s)	633
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	419
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	356, 555
Cac8I	GCNNGC	3 cut(s)	6, 48, 115
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	3 cut(s)	70, 87, 614
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	3 cut(s)	118, 218, 420
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	5 cut(s)	401, 412, 511, 609, 640
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	419, 474
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	3 cut(s)	70, 87, 614
Eco53kI	GAGCTC	1 cut(s)	510
Eco57I	CTGAAG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRII	CCWGG	4 cut(s)	72, 207, 311, 394
EcoT14I	CCWWGG	2 cut(s)	419, 474
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	419, 474
FaeI	CATG	3 cut(s)	121, 221, 423
FatI	CATG	3 cut(s)	117, 217, 419
Fnu4HI	GCNGC	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	121, 221, 423
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	25, 57, 410, 516
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	4 cut(s)	46, 205, 448, 550
Hpy188III	TCNNGA	2 cut(s)	265, 513
Hpy8I	GTNNAC	4 cut(s)	46, 205, 448, 550
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	46, 117, 205, 260, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 436
HpyF3I	CTNAG	5 cut(s)	401, 412, 511, 609, 640
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	121, 221, 423
HspAI	GCGC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
MabI	ACCWGGT	1 cut(s)	207
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	407, 565
MboII	GAAGA	6 cut(s)	137, 205, 206, 367, 635, 638
MhlI	GDGCHC	3 cut(s)	48, 207, 512
MluCI	AATT	2 cut(s)	197, 243
MlyI	GAGTC	4 cut(s)	19, 66, 404, 525
MnlI	CCTC	4 cut(s)	150, 174, 347, 529
MroNI	GCCGGC	1 cut(s)	4
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	4 cut(s)	74, 209, 313, 396
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	4 cut(s)	74, 209, 313, 396
MvnI	CGCG	3 cut(s)	50, 62, 113
MwoI	GCNNNNNNNGC	2 cut(s)	123, 436
NaeI	GCCGGC	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	419
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	121, 221, 423
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	407
PctI	GAATGC	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	4 cut(s)	19, 65, 404, 524
PpsI	GAGTC	4 cut(s)	19, 65, 404, 524
PpuMI	RGGWCCY	1 cut(s)	614
Psp124BI	GAGCTC	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	4 cut(s)	72, 207, 311, 394
PspGI	CCWGG	4 cut(s)	72, 207, 311, 394
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	3 cut(s)	70, 87, 614
PspPPI	RGGWCCY	1 cut(s)	614
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacI	GAGCTC	1 cut(s)	512
SatI	GCNGC	1 cut(s)	63
Sau96I	GGNCC	3 cut(s)	70, 87, 614
SchI	GAGTC	4 cut(s)	19, 66, 404, 525
ScrFI	CCNGG	4 cut(s)	74, 209, 313, 396
SduI	GDGCHC	3 cut(s)	48, 207, 512
SetI	ASST	7 cut(s)	38, 174, 210, 476, 495, 512, 638
SexAI	ACCWGGT	1 cut(s)	207
SfcI	CTRYAG	2 cut(s)	298, 618
SinI	GGWCC	3 cut(s)	70, 87, 614
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	197, 243
SsiI	CCGC	2 cut(s)	62, 105
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	4 cut(s)	72, 207, 311, 394
StyI	CCWWGG	2 cut(s)	419, 474
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	23, 519
TaqII	GACCGA	1 cut(s)	589
TasI	AATT	2 cut(s)	197, 243
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	65
TscAI	CASTG	2 cut(s)	356, 562
TseFI	GTSAC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	356, 562
VneI	GTGCAC	2 cut(s)	44, 203
VpaK11BI	GGWCC	3 cut(s)	70, 87, 614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.