Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Reverse (-)

25242417 .. 25245688

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGGAGGCCCACGTGTCATCTATACACGAAGTTTGTGATCCCAATCCGACGGTCCAATTGACTTGCCATAATCAGGTGGAAAAGTTAAGGAGGGAGGAGGAGGAGAGAGAGAGAGAGAGAGAGAAAGAGATGGCGCTAAAGGTACCGGCGCTTCCGTTCACGTTTGTGGTACACACGCTCGGAATCGTGGCTTTGGTTTTGGTGTTGGTTTGGAACATTCATTTCAGAGGCGGCTTGGCATGGGAAGCTACCAACAAGAACCTCATCTTCAACCTCCATCCTGTTCTCATGTTACTTGGCCTAATTTTCTTGGGAGGAGAAGCCATTGTTAGTTACAAAGCACTGCCTTTCAGGAAAGAGGTGAAGAAAGTGATACACTTGGTTCTTCATGCCCTCGCGTTAGGTCTTGGGATCATTGGTATTTATCTTGCATTCAAGAACCATAACGAGAGTGGAATTGCCAATCTGTACAGTTTGCACTCTTGGATTGGAATCGGGGTCATTTGTCTCTATGGAATTCAGTGGATATATGGGTTCGTGACCTTCTTCTACCCCGGAGGAAGTCCTGCACTGAGAAGTGAGTCTATCCCATGGCATGTGGCGTTTGGAATCACCGTGTACTTACTAGCTGTTGGCAATGCTTCATTAGGGTTCTTAGAGAAGCTCACGTTCCTCGAGAACTCGGGAATCGATAAATTTGGGACGGAGGCCTTTCTCGTCAACTTCACCGCAATCATCACTGTACTGTTCGGAGTCTTCGTTATACTCTCAGTACTTTCTGAAGCTCCTCCTTCTGTAGAAGATGACAACAGCTATTCTGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

277

Amino Acids

30.66

Weight (kDa)

5.87

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AccII	CGCG	1 cut(s)	401
AciI	CCGC	2 cut(s)	234, 732
AclWI	GGATC	2 cut(s)	35, 422
AcsI	RAATTY	2 cut(s)	519, 698
AcuI	CTGAAG	1 cut(s)	804
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	6 cut(s)	147, 174, 473, 623, 747, 777
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	274, 439
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	5 cut(s)	251, 632, 667, 788, 816
AluI	AGCT	5 cut(s)	251, 632, 667, 788, 816
Alw26I	GTCTC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	35, 422
Ama87I	CYCGRG	2 cut(s)	677, 685
AoxI	GGCC	3 cut(s)	9, 301, 711
ApoI	RAATTY	2 cut(s)	519, 698
Asp718I	GGTACC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	139, 154
AspS9I	GGNCC	2 cut(s)	10, 55
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	3 cut(s)	376, 607, 721
AvaI	CYCGRG	2 cut(s)	677, 685
AvaII	GGWCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	138, 170
BbrPI	CACGTG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	751
BccI	CCATC	2 cut(s)	127, 288
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	798
BfoI	RGCGCY	2 cut(s)	140, 155
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	2 cut(s)	677, 685
BmgT120I	GGNCC	2 cut(s)	10, 55
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	751
BpuMI	CCSGG	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	16
BsaBI	GATNNNNATC	2 cut(s)	45, 494
BsaJI	CCNNGG	2 cut(s)	556, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	646
Bse8I	GATNNNNATC	2 cut(s)	45, 494
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	556, 593
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	2 cut(s)	45, 494
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	566, 786
BseRI	GAGGAG	6 cut(s)	20, 113, 116, 119, 333, 780
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	3 cut(s)	11, 303, 713
BshNI	GGYRCC	1 cut(s)	145
BshVI	ATCGAT	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	677, 685
BsiSI	CCGG	2 cut(s)	149, 558
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	718
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	3 cut(s)	11, 303, 713
BsoBI	CYCGRG	2 cut(s)	677, 685
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	40, 414
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	2 cut(s)	234, 732
BspANI	GGCC	3 cut(s)	11, 303, 713
BspCNI	CTCAG	2 cut(s)	567, 785
BspDI	ATCGAT	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	35, 422
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	646
BsrFI	RCCGGY	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	471
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	556, 593
BssMI	GATC	2 cut(s)	40, 414
BssT1I	CCWWGG	1 cut(s)	593
Bst4CI	ACNGT	5 cut(s)	55, 476, 619, 745, 750
BstAUI	TGTACA	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	575, 658, 772
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	401
BstH2I	RGCGCY	2 cut(s)	140, 155
BstHHI	GCGC	2 cut(s)	139, 154
BstKTI	GATC	2 cut(s)	43, 417
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	2 cut(s)	40, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	798
BstUI	CGCG	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	751
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	11, 303, 713
BsuTUI	ATCGAT	1 cut(s)	693
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	4 cut(s)	344, 530, 572, 741
CfoI	GCGC	2 cut(s)	139, 154
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	10, 55
ClaI	ATCGAT	1 cut(s)	693
Csp6I	GTAC	6 cut(s)	146, 173, 472, 622, 746, 776
CviAII	CATG	5 cut(s)	243, 292, 392, 594, 599
CviQI	GTAC	6 cut(s)	146, 173, 472, 622, 746, 776
DdeI	CTNAG	3 cut(s)	575, 658, 772
DpnI	GATC	2 cut(s)	42, 416
DpnII	GATC	2 cut(s)	40, 414
Eco130I	CCWWGG	1 cut(s)	593
Eco147I	AGGCCT	1 cut(s)	713
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	804
Eco72I	CACGTG	1 cut(s)	16
Eco88I	CYCGRG	2 cut(s)	677, 685
EcoRI	GAATTC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	5 cut(s)	246, 295, 395, 597, 602
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	5 cut(s)	242, 291, 391, 593, 598
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	2 cut(s)	138, 153
GluI	GCNGC	1 cut(s)	235
HaeII	RGCGCY	2 cut(s)	140, 155
HaeIII	GGCC	3 cut(s)	11, 303, 713
HapII	CCGG	2 cut(s)	149, 558
HhaI	GCGC	2 cut(s)	139, 154
Hin1II	CATG	5 cut(s)	246, 295, 395, 597, 602
Hin6I	GCGC	2 cut(s)	137, 152
HinP1I	GCGC	2 cut(s)	137, 152
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	6 cut(s)	186, 495, 584, 612, 690, 756
HpaII	CCGG	2 cut(s)	149, 558
HphI	GGTGA	3 cut(s)	376, 607, 721
Hpy166II	GTNNAC	4 cut(s)	162, 175, 622, 724
Hpy188I	TCNGA	5 cut(s)	51, 185, 230, 755, 784
Hpy188III	TCNNGA	5 cut(s)	355, 439, 541, 679, 687
Hpy8I	GTNNAC	4 cut(s)	162, 175, 622, 724
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	556, 804
HpyCH4III	ACNGT	5 cut(s)	55, 476, 619, 745, 750
HpyCH4IV	ACGT	3 cut(s)	15, 164, 671
HpyCH4V	TGCA	3 cut(s)	434, 481, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	575, 658, 772
HpySE526I	ACGT	3 cut(s)	15, 164, 671
Hsp92II	CATG	5 cut(s)	246, 295, 395, 597, 602
HspAI	GCGC	2 cut(s)	137, 152
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	40, 414
LmnI	GCTCC	1 cut(s)	793
LpnPI	CCDG	6 cut(s)	62, 162, 297, 340, 571, 582
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	3 cut(s)	15, 164, 671
MaeIII	GTNAC	3 cut(s)	294, 335, 541
MalI	GATC	2 cut(s)	42, 416
MboI	GATC	2 cut(s)	40, 414
MboII	GAAGA	6 cut(s)	262, 379, 380, 541, 751, 815
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	5 cut(s)	59, 306, 459, 519, 698
MlyI	GAGTC	2 cut(s)	593, 765
MmeI	TCCRAC	1 cut(s)	74
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	2 cut(s)	149, 558
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	434
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	2 cut(s)	40, 414
NlaIII	CATG	5 cut(s)	246, 295, 395, 597, 602
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	602
OliI	CACNNNNGTG	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	4 cut(s)	186, 495, 612, 690
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	2 cut(s)	592, 764
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	2 cut(s)	592, 764
Ppu21I	YACGTR	1 cut(s)	16
PspCI	CACGTG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	10, 55
RsaI	GTAC	6 cut(s)	147, 174, 473, 623, 747, 777
RsaNI	GTAC	6 cut(s)	146, 173, 472, 622, 746, 776
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	40, 414
Sau96I	GGNCC	2 cut(s)	10, 55
ScaI	AGTACT	1 cut(s)	777
SchI	GAGTC	2 cut(s)	593, 765
ScrFI	CCNGG	1 cut(s)	558
SfcI	CTRYAG	1 cut(s)	798
Sfr274I	CTCGAG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	59, 306, 459, 519, 698
SseBI	AGGCCT	1 cut(s)	713
SsiI	CCGC	2 cut(s)	234, 732
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	713
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	5 cut(s)	55, 476, 619, 745, 750
TaiI	ACGT	3 cut(s)	18, 167, 674
TaqI	TCGA	2 cut(s)	678, 693
TasI	AATT	5 cut(s)	59, 306, 459, 519, 698
TatI	WGTACW	4 cut(s)	471, 621, 745, 775
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	4 cut(s)	186, 495, 612, 690
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	4 cut(s)	351, 530, 579, 748
TseFI	GTSAC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	212, 380, 636
TspGWI	ACGGA	2 cut(s)	147, 722
TspRI	CASTG	4 cut(s)	351, 530, 579, 748
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	2 cut(s)	519, 698
XceI	RCATGY	1 cut(s)	602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	677
XspI	CTAG	1 cut(s)	629
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.