Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Reverse (-)

62694764 .. 62698673

Gene Structure 3910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAATCTTCCTTCACTTTTGTCTGTGTTGCAGCCATTATCAGTTATAGATACCTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTCGGTATAATCGGCATTTATGCTGCATTCAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTCTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTCTTCTACCCAAAAGGAAGTACAGGGCTGAGAAGTGACTCAGTTCCATGGCATGTGATTTTTGGGCTTCTCGTGTACATTTTGGTCGTCGGCAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGCTCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCCTTTGTGATATTCTCGGTCATTTCTCAGGGTCCTGTAGAAGAAGACCACAGCTACTCAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

177

Amino Acids

19.56

Weight (kDa)

7.01

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B561	PF03188	2 - 128	9.2e-40	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	277, 332
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	90, 194
AluBI	AGCT	3 cut(s)	376, 393, 519
AluI	AGCT	3 cut(s)	376, 393, 519
Alw21I	GWGCWC	2 cut(s)	90, 395
Alw26I	GTCTC	1 cut(s)	155
Alw44I	GTGCAC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	465
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	32, 140
AspS9I	GGNCC	2 cut(s)	465, 497
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	395
BauI	CACGAG	2 cut(s)	326, 455
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	90, 395
BbvI	GCAGC	2 cut(s)	44, 127
BciT130I	CCWGG	2 cut(s)	92, 196
BcoDI	GTCTC	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	181, 501
BisI	GCNGC	2 cut(s)	33, 141
BlsI	GCNGC	2 cut(s)	34, 142
Bme1390I	CCNGG	2 cut(s)	92, 196
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	465, 497
BmiI	GGNNCC	2 cut(s)	466, 498
BmrFI	CCNGG	2 cut(s)	92, 196
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	302, 357
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	92, 196
BseDI	CCNNGG	2 cut(s)	302, 357
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	4 cut(s)	275, 309, 408, 506
BseNI	ACTGG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	44, 127
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	2 cut(s)	90, 395
BsmAI	GTCTC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	90, 395
Bsp1407I	TGTACA	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	302
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	4 cut(s)	276, 308, 407, 505
BspLI	GGNNCC	2 cut(s)	466, 498
BsrDI	GCAATG	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	302, 357
BssSI	CACGAG	2 cut(s)	326, 455
BssT1I	CCWWGG	2 cut(s)	302, 357
Bst2BI	CACGAG	2 cut(s)	326, 455
Bst2UI	CCWGG	2 cut(s)	92, 196
Bst4CI	ACNGT	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	330
BstDEI	CTNAG	5 cut(s)	284, 295, 394, 492, 523
BstDSI	CCRYGG	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	92, 196
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	90, 194
BstSFI	CTRYAG	2 cut(s)	181, 501
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	44, 127
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	239, 438
Cfr13I	GGNCC	2 cut(s)	465, 497
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	276, 331
CviAII	CATG	3 cut(s)	101, 303, 308
CviJI	RGCY	7 cut(s)	35, 283, 322, 376, 393, 467, 519
CviKI_1	RGCY	7 cut(s)	35, 283, 322, 376, 393, 467, 519
CviQI	GTAC	2 cut(s)	276, 331
DdeI	CTNAG	5 cut(s)	284, 295, 394, 492, 523
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	302, 357
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	393
EcoO109I	RGGNCCY	2 cut(s)	465, 497
EcoRII	CCWGG	2 cut(s)	90, 194
EcoT14I	CCWWGG	2 cut(s)	302, 357
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	2 cut(s)	302, 357
FaeI	CATG	3 cut(s)	104, 306, 311
FatI	CATG	3 cut(s)	100, 302, 307
Fnu4HI	GCNGC	2 cut(s)	33, 141
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	33, 141
GluI	GCNGC	2 cut(s)	33, 141
HaeIII	GGCC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	104, 306, 311
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	293, 399
Hpy166II	GTNNAC	3 cut(s)	88, 331, 433
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	2 cut(s)	148, 396
Hpy8I	GTNNAC	3 cut(s)	88, 331, 433
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	22, 65
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	32, 88, 143, 190
HpyF3I	CTNAG	5 cut(s)	284, 295, 394, 492, 523
Hsp92II	CATG	3 cut(s)	104, 306, 311
Lsp1109I	GCAGC	2 cut(s)	44, 127
MabI	ACCWGGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	290, 448
MboII	GAAGA	5 cut(s)	88, 89, 250, 518, 521
MhlI	GDGCHC	2 cut(s)	90, 395
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	287, 408
MnlI	CCTC	3 cut(s)	57, 230, 412
MspR9I	CCNGG	2 cut(s)	92, 196
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	92, 196
NcoI	CCATGG	1 cut(s)	302
NlaIII	CATG	3 cut(s)	104, 306, 311
NlaIV	GGNNCC	2 cut(s)	466, 498
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	311
PctI	GAATGC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	34, 142
PleI	GAGTC	2 cut(s)	287, 407
PpsI	GAGTC	2 cut(s)	287, 407
PpuMI	RGGWCCY	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	90, 194
PspGI	CCWGG	2 cut(s)	90, 194
PspN4I	GGNNCC	2 cut(s)	466, 498
PspPI	GGNCC	2 cut(s)	465, 497
PspPPI	RGGWCCY	1 cut(s)	497
RsaI	GTAC	2 cut(s)	277, 332
RsaNI	GTAC	2 cut(s)	276, 331
SacI	GAGCTC	1 cut(s)	395
SatI	GCNGC	2 cut(s)	33, 141
Sau96I	GGNCC	2 cut(s)	465, 497
SchI	GAGTC	2 cut(s)	287, 408
ScrFI	CCNGG	2 cut(s)	92, 196
SduI	GDGCHC	2 cut(s)	90, 395
SetI	ASST	6 cut(s)	57, 93, 359, 378, 395, 521
SexAI	ACCWGGT	1 cut(s)	90
SfcI	CTRYAG	2 cut(s)	181, 501
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	90, 194
StyI	CCWWGG	2 cut(s)	302, 357
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	1 cut(s)	80
TatI	WGTACW	2 cut(s)	275, 330
TscAI	CASTG	2 cut(s)	239, 445
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	32, 140
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	17, 89
TspRI	CASTG	2 cut(s)	239, 445
VneI	GTGCAC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	497
XceI	RCATGY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.