Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Reverse (-)

64226035 .. 64229467

Gene Structure 3433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCCGCCATAGGAGTATCTTCGACTCCATTGACGTTTGTAATGCACGCGCTCGGAGTCGCGGCTTTGGTCCTGGTTCTGGTTTGGTCCATATACTTCAGGGGCGGTTTCGCATGGGAAGCCACCGACAAGAGCCTCATCTTCAACCTCCATCCTTTTCTCATGGTATTGGGCTTAGTTTTCCTTGGAGGAGAAGCCATTATCAGCTATAGATACCTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTCGGTATAATCGGCATTTATACTGCATTTAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTCTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTCTTCTACCCAAAAGGAAGTCCAGGGCTGAGAAGTGACTCCATGGAACATTTTGGGCTTTTCGTGTACATTTTGGTCGTCGGGAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGCTCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCCTTTGTGATATTAATCTCGGTCATTTCTCAGGGTCCTGTAGAAGAAGACCACAGCTACTCAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

229

Amino Acids

25.16

Weight (kDa)

6.22

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B561	PF03188	50 - 179	1.3e-41	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 62
AciI	CCGC	3 cut(s)	6, 62, 105
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	2 cut(s)	11, 79
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	4 cut(s)	72, 252, 356, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	207, 529, 546, 675
AluI	AGCT	4 cut(s)	207, 529, 546, 675
Alw21I	GWGCWC	2 cut(s)	252, 548
Alw26I	GTCTC	1 cut(s)	317
Alw44I	GTGCAC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	618
ApaLI	GTGCAC	1 cut(s)	248
AseI	ATTAAT	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	4 cut(s)	70, 87, 618, 653
AvaII	GGWCC	3 cut(s)	70, 87, 653
BaeGI	GKGCMC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	548
BauI	CACGAG	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	672
Bbv12I	GWGCWC	2 cut(s)	252, 548
BccI	CCATC	1 cut(s)	159
BciT130I	CCWGG	4 cut(s)	74, 254, 358, 441
BcoDI	GTCTC	1 cut(s)	317
BfmI	CTRYAG	3 cut(s)	208, 343, 657
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	74, 254, 358, 441
Bme18I	GGWCC	3 cut(s)	70, 87, 653
BmgT120I	GGNCC	4 cut(s)	70, 87, 618, 653
BmiI	GGNNCC	2 cut(s)	619, 654
BmrFI	CCNGG	4 cut(s)	74, 254, 358, 441
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	672
Bpu10I	CCTNAGC	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	632
BsaJI	CCNNGG	4 cut(s)	184, 440, 459, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 79
Bse1I	ACTGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	632
BseBI	CCWGG	4 cut(s)	74, 254, 358, 441
BseDI	CCNNGG	4 cut(s)	184, 440, 459, 510
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	632
BseLI	CCNNNNNNNGG	2 cut(s)	11, 79
BseMII	CTCAG	3 cut(s)	437, 561, 662
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	50, 62
BshFI	GGCC	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	252, 548
BslI	CCNNNNNNNGG	2 cut(s)	11, 79
BsmAI	GTCTC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	252, 548
Bsp1407I	TGTACA	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	3 cut(s)	6, 62, 105
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	3 cut(s)	438, 560, 661
BspFNI	CGCG	2 cut(s)	50, 62
BspLI	GGNNCC	2 cut(s)	619, 654
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	184, 440, 459, 510
BssSI	CACGAG	1 cut(s)	608
BssT1I	CCWWGG	3 cut(s)	184, 459, 510
Bst2BI	CACGAG	1 cut(s)	608
Bst2UI	CCWGG	4 cut(s)	74, 254, 358, 441
Bst4CI	ACNGT	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	6, 48
BstDEI	CTNAG	5 cut(s)	175, 446, 547, 648, 679
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	50, 62
BstHHI	GCGC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	4 cut(s)	74, 254, 358, 441
BstSCI	CCNGG	4 cut(s)	72, 252, 356, 439
BstSFI	CTRYAG	3 cut(s)	208, 343, 657
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	2 cut(s)	50, 62
BstV2I	GAAGAC	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	401, 591
Cac8I	GCNNGC	2 cut(s)	6, 48
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	70, 87, 618, 653
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	4 cut(s)	114, 163, 263, 460
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	5 cut(s)	175, 446, 547, 648, 679
Ecl136II	GAGCTC	1 cut(s)	546
Eco130I	CCWWGG	3 cut(s)	184, 459, 510
Eco24I	GRGCYC	1 cut(s)	548
Eco47I	GGWCC	3 cut(s)	70, 87, 653
Eco53kI	GAGCTC	1 cut(s)	546
Eco57I	CTGAAG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	546
EcoO109I	RGGNCCY	2 cut(s)	618, 653
EcoRII	CCWGG	4 cut(s)	72, 252, 356, 439
EcoT14I	CCWWGG	3 cut(s)	184, 459, 510
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	3 cut(s)	184, 459, 510
FaeI	CATG	4 cut(s)	117, 166, 266, 463
FatI	CATG	4 cut(s)	113, 162, 262, 459
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	117, 166, 266, 463
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	4 cut(s)	25, 57, 455, 552
Hpy166II	GTNNAC	3 cut(s)	250, 484, 586
Hpy188I	TCNGA	2 cut(s)	56, 682
Hpy188III	TCNNGA	2 cut(s)	499, 549
Hpy8I	GTNNAC	3 cut(s)	250, 484, 586
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	46, 250, 305, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	5 cut(s)	175, 446, 547, 648, 679
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	117, 166, 266, 463
HspAI	GCGC	1 cut(s)	50
MabI	ACCWGGT	1 cut(s)	252
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	452, 601
MboII	GAAGA	7 cut(s)	12, 133, 250, 251, 412, 674, 677
MhlI	GDGCHC	2 cut(s)	252, 548
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	4 cut(s)	19, 66, 449, 561
MnlI	CCTC	6 cut(s)	146, 158, 182, 219, 392, 565
MseI	TTAA	2 cut(s)	309, 632
MspR9I	CCNGG	4 cut(s)	74, 254, 358, 441
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	4 cut(s)	74, 254, 358, 441
MvnI	CGCG	2 cut(s)	50, 62
MwoI	GCNNNNNNNGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	459
NlaIII	CATG	4 cut(s)	117, 166, 266, 463
NlaIV	GGNNCC	2 cut(s)	619, 654
NmuCI	GTSAC	1 cut(s)	452
PctI	GAATGC	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	4 cut(s)	19, 65, 449, 560
PpsI	GAGTC	4 cut(s)	19, 65, 449, 560
PpuMI	RGGWCCY	1 cut(s)	653
PshBI	ATTAAT	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	4 cut(s)	72, 252, 356, 439
PspGI	CCWGG	4 cut(s)	72, 252, 356, 439
PspN4I	GGNNCC	2 cut(s)	619, 654
PspPI	GGNCC	4 cut(s)	70, 87, 618, 653
PspPPI	RGGWCCY	1 cut(s)	653
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	309, 632
SatI	GCNGC	1 cut(s)	63
Sau96I	GGNCC	4 cut(s)	70, 87, 618, 653
SchI	GAGTC	4 cut(s)	19, 66, 449, 561
ScrFI	CCNGG	4 cut(s)	74, 254, 358, 441
SduI	GDGCHC	2 cut(s)	252, 548
SetI	ASST	9 cut(s)	38, 150, 209, 219, 255, 512, 531, 548, 677
SexAI	ACCWGGT	1 cut(s)	252
SfcI	CTRYAG	3 cut(s)	208, 343, 657
SinI	GGWCC	3 cut(s)	70, 87, 653
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	3 cut(s)	6, 62, 105
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	4 cut(s)	72, 252, 356, 439
StyI	CCWWGG	3 cut(s)	184, 459, 510
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	23, 555
TaqII	GACCGA	1 cut(s)	628
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	309, 632
Tru9I	TTAA	2 cut(s)	309, 632
TscAI	CASTG	2 cut(s)	401, 598
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	401, 598
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	70, 87, 653
VspI	ATTAAT	1 cut(s)	632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.