RLG00000026533

Cytochrome b-561 / ferric reductase transmembrane domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007411
Physical Location & Seq
Forward (+)
3638952 .. 3641863
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026533

Sequence Viewer

Length: 696 bp
ATGCCGGCCTTAGGAGTACCATCGACTCCATTCACGTTTGTAGTGCACGCGCTCGGAGTTGTGGTTTTGATCCTGGTTCTGGTTTGGTCCATATACTTCAGGGGCGGTTTCGCATGGGAAGCCTCCGACAAGAGCCTCATCTTCAACCTCCATCCTTTTCTCATGGTATTGGGCTTAGTTTTCCTTGGAGGAGAAGCCATTATCAGTTATAGATACCTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTCGGTATAATCGGCATTTATACTGCATTCAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTTTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTCTTCTACCCAAAAGGAAGTCCAGGGCTAAGAAGTGACTCAGTTCCATGGCATGTGATTTTTGGGCTTCTCGTGTACATTTTGGTCGTCGGCAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGCTCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCCTTTGTGATATTCTCGGTCATTTCTCAAGGTCCTGTAGAAGAAGACCACAGCTACTCGGAAATATGA

Protein Analysis

232

Amino Acids

25.46

Weight (kDa)

6.43

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 50 - 182 2.6e-47 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 2 cut(s) 18, 494
AfiI CCNNNNNNNGG 2 cut(s) 11, 79
AgsI TTSAA 2 cut(s) 145, 310
AjnI CCWGG 4 cut(s) 72, 252, 356, 439
AluBI AGCT 3 cut(s) 538, 555, 681
AluI AGCT 3 cut(s) 538, 555, 681
Alw21I GWGCWC 3 cut(s) 48, 252, 557
Alw26I GTCTC 1 cut(s) 317
Alw44I GTGCAC 2 cut(s) 44, 248
AlwI GGATC 1 cut(s) 64
AoxI GGCC 2 cut(s) 6, 627
ApaLI GTGCAC 2 cut(s) 44, 248
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 87, 627, 659
AvaII GGWCC 2 cut(s) 87, 659
AxyI CCTNAGG 1 cut(s) 10
BaeGI GKGCMC 2 cut(s) 48, 252
BanII GRGCYC 1 cut(s) 557
BauI CACGAG 2 cut(s) 488, 617
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 3 cut(s) 48, 252, 557
BccI CCATC 2 cut(s) 28, 159
BciT130I CCWGG 4 cut(s) 74, 254, 358, 441
BcoDI GTCTC 1 cut(s) 317
BfmI CTRYAG 2 cut(s) 343, 663
Bme1390I CCNGG 4 cut(s) 74, 254, 358, 441
Bme18I GGWCC 2 cut(s) 87, 659
BmgT120I GGNCC 3 cut(s) 87, 627, 659
BmiI GGNNCC 1 cut(s) 628
BmrFI CCNGG 4 cut(s) 74, 254, 358, 441
BmrI ACTGGG 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 556
BpuEI CTTGAG 2 cut(s) 569, 639
BsaJI CCNNGG 4 cut(s) 184, 440, 464, 519
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 79
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 331
Bse21I CCTNAGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 4 cut(s) 74, 254, 358, 441
BseDI CCNNGG 4 cut(s) 184, 440, 464, 519
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 11, 79
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 2 cut(s) 471, 570
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 204
BseSI GKGCMC 2 cut(s) 48, 252
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 8, 629
BsiHKAI GWGCWC 3 cut(s) 48, 252, 557
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 11, 79
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 2 cut(s) 8, 629
Bsp1286I GDGCHC 3 cut(s) 48, 252, 557
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 1 cut(s) 69
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 8, 629
BspCNI CTCAG 2 cut(s) 470, 569
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 628
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 517
BsrFI RCCGGY 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 184, 440, 464, 519
BssMI GATC 1 cut(s) 69
BssSI CACGAG 2 cut(s) 488, 617
BssT1I CCWWGG 3 cut(s) 184, 464, 519
Bst2BI CACGAG 2 cut(s) 488, 617
Bst2UI CCWGG 4 cut(s) 74, 254, 358, 441
Bst4CI ACNGT 1 cut(s) 347
BstAUI TGTACA 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 6, 48
BstDEI CTNAG 5 cut(s) 10, 175, 446, 457, 556
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 4 cut(s) 74, 254, 358, 441
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 4 cut(s) 72, 252, 356, 439
BstSFI CTRYAG 2 cut(s) 343, 663
BstSLI GKGCMC 2 cut(s) 48, 252
BstUI CGCG 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 678
Bsu36I CCTNAGG 1 cut(s) 10
BsuRI GGCC 2 cut(s) 8, 629
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 401, 600
Cac8I GCNNGC 2 cut(s) 6, 48
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 3 cut(s) 87, 627, 659
CsiI ACCWGGT 1 cut(s) 252
Csp6I GTAC 2 cut(s) 17, 493
CviAII CATG 5 cut(s) 114, 163, 263, 465, 470
CviQI GTAC 2 cut(s) 17, 493
DdeI CTNAG 5 cut(s) 10, 175, 446, 457, 556
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 3 cut(s) 184, 464, 519
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 2 cut(s) 87, 659
Eco53kI GAGCTC 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 555
EcoO109I RGGNCCY 2 cut(s) 627, 659
EcoRII CCWGG 4 cut(s) 72, 252, 356, 439
EcoT14I CCWWGG 3 cut(s) 184, 464, 519
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 3 cut(s) 184, 464, 519
FaeI CATG 5 cut(s) 117, 166, 266, 468, 473
FatI CATG 5 cut(s) 113, 162, 262, 464, 469
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 557
GlaI GCGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 8, 629
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 52
Hin1II CATG 5 cut(s) 117, 166, 266, 468, 473
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 3 cut(s) 25, 455, 561
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 4 cut(s) 46, 250, 493, 595
Hpy188I TCNGA 3 cut(s) 56, 127, 688
Hpy188III TCNNGA 2 cut(s) 310, 558
Hpy8I GTNNAC 4 cut(s) 46, 250, 493, 595
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 4 cut(s) 46, 250, 305, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 5 cut(s) 10, 175, 446, 457, 556
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 5 cut(s) 117, 166, 266, 468, 473
HspAI GCGC 1 cut(s) 50
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 69
MabI ACCWGGT 1 cut(s) 252
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 452, 610
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 6 cut(s) 133, 250, 251, 412, 680, 683
MhlI GDGCHC 3 cut(s) 48, 252, 557
MluCI AATT 1 cut(s) 242
MlyI GAGTC 3 cut(s) 19, 449, 570
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 7 cut(s) 133, 146, 158, 182, 219, 392, 574
MroNI GCCGGC 1 cut(s) 4
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 4 cut(s) 74, 254, 358, 441
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 4 cut(s) 74, 254, 358, 441
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 119
NaeI GCCGGC 1 cut(s) 6
NcoI CCATGG 1 cut(s) 464
NdeII GATC 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 5 cut(s) 117, 166, 266, 468, 473
NlaIV GGNNCC 1 cut(s) 628
NmuCI GTSAC 1 cut(s) 452
NspI RCATGY 1 cut(s) 473
PctI GAATGC 1 cut(s) 305
PdiI GCCGGC 1 cut(s) 6
PfoI TCCNGGA 1 cut(s) 356
PleI GAGTC 3 cut(s) 19, 449, 569
PpsI GAGTC 3 cut(s) 19, 449, 569
PpuMI RGGWCCY 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 557
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 4 cut(s) 72, 252, 356, 439
PspGI CCWGG 4 cut(s) 72, 252, 356, 439
PspN4I GGNNCC 1 cut(s) 628
PspPI GGNCC 3 cut(s) 87, 627, 659
PspPPI RGGWCCY 1 cut(s) 659
RsaI GTAC 2 cut(s) 18, 494
RsaNI GTAC 2 cut(s) 17, 493
SacI GAGCTC 1 cut(s) 557
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 3 cut(s) 87, 627, 659
SchI GAGTC 3 cut(s) 19, 449, 570
ScrFI CCNGG 4 cut(s) 74, 254, 358, 441
SduI GDGCHC 3 cut(s) 48, 252, 557
SetI ASST 9 cut(s) 38, 150, 219, 255, 521, 540, 557, 661, 683
SexAI ACCWGGT 1 cut(s) 252
SfcI CTRYAG 2 cut(s) 343, 663
SinI GGWCC 2 cut(s) 87, 659
SmlI CTYRAG 2 cut(s) 548, 654
SmoI CTYRAG 2 cut(s) 548, 654
Sse9I AATT 1 cut(s) 242
SsiI CCGC 1 cut(s) 105
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 72, 252, 356, 439
StyI CCWWGG 3 cut(s) 184, 464, 519
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 23, 564
TaqII GACCGA 1 cut(s) 634
TasI AATT 1 cut(s) 242
TatI WGTACW 1 cut(s) 492
TscAI CASTG 2 cut(s) 401, 607
TseFI GTSAC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 2 cut(s) 401, 607
VneI GTGCAC 2 cut(s) 44, 248
VpaK11BI GGWCC 2 cut(s) 87, 659
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.