Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Reverse (-)

65025931 .. 65029532

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG419600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCCCGCCATAGGAGTATCTTCGACTCCATTGACGTTTGTAATGCACGCGCTCGGAGTCGCGGCTTTGGTCCTGGTTCTGGTTTGGTCCATATACTTCAGGGGCGGTTTCGCATGGGAAGCCACCGACAAGAGCCTCATCTTCAACCTCCATCCTTTTCTCATGGTATTGGGCTTAGTTTTCCTTGGAGGAGAAGCCATTATCAGTTATAGATACCTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTCGGTATAATCGGCATTTATACTGCATTTAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTCTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTCTTCTACCCAAAAGGAAGTCCAGGGCTGAGATTCCTGAGAAGTGACTCCATGGAACATTTTGGGCTTTTCGTGTACATTTTGGTCGTCGGCAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGATCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCCTTTGTGATATTCTCGGTCATTTCTCAGGGTCCTGTAGAAGAAGACCACAGCTACTCAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

231

Amino Acids

25.56

Weight (kDa)

6.7

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B561	PF03188	50 - 182	8.1e-42	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 62
AciI	CCGC	3 cut(s)	6, 62, 105
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	11, 79
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	4 cut(s)	72, 252, 356, 439
AluBI	AGCT	2 cut(s)	538, 681
AluI	AGCT	2 cut(s)	538, 681
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	317
Alw44I	GTGCAC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	627
ApaLI	GTGCAC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	4 cut(s)	70, 87, 627, 659
AvaII	GGWCC	3 cut(s)	70, 87, 659
BaeGI	GKGCMC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	1 cut(s)	159
BciT130I	CCWGG	4 cut(s)	74, 254, 358, 441
BcoDI	GTCTC	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	343, 663
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	74, 254, 358, 441
Bme18I	GGWCC	3 cut(s)	70, 87, 659
BmgT120I	GGNCC	4 cut(s)	70, 87, 627, 659
BmiI	GGNNCC	2 cut(s)	628, 660
BmrFI	CCNGG	4 cut(s)	74, 254, 358, 441
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	4 cut(s)	184, 440, 468, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 79
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	4 cut(s)	74, 254, 358, 441
BseDI	CCNNGG	4 cut(s)	184, 440, 468, 519
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	11, 79
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	3 cut(s)	437, 446, 668
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	50, 62
BshFI	GGCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	11, 79
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	554
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	3 cut(s)	6, 62, 105
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	3 cut(s)	438, 447, 667
BspFNI	CGCG	2 cut(s)	50, 62
BspLI	GGNNCC	2 cut(s)	628, 660
BsrDI	GCAATG	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	184, 440, 468, 519
BssMI	GATC	1 cut(s)	554
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	3 cut(s)	184, 468, 519
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	4 cut(s)	74, 254, 358, 441
Bst4CI	ACNGT	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	6, 48
BstDEI	CTNAG	5 cut(s)	175, 446, 455, 654, 685
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	50, 62
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	557
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	554
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	4 cut(s)	74, 254, 358, 441
BstSCI	CCNGG	4 cut(s)	72, 252, 356, 439
BstSFI	CTRYAG	2 cut(s)	343, 663
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	2 cut(s)	50, 62
BstV2I	GAAGAC	1 cut(s)	678
BsuRI	GGCC	1 cut(s)	629
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	401, 600
Cac8I	GCNNGC	2 cut(s)	6, 48
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	70, 87, 627, 659
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	4 cut(s)	114, 163, 263, 469
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	5 cut(s)	175, 446, 455, 654, 685
DpnI	GATC	1 cut(s)	556
DpnII	GATC	1 cut(s)	554
Eco130I	CCWWGG	3 cut(s)	184, 468, 519
Eco47I	GGWCC	3 cut(s)	70, 87, 659
Eco57I	CTGAAG	1 cut(s)	82
EcoO109I	RGGNCCY	2 cut(s)	627, 659
EcoRII	CCWGG	4 cut(s)	72, 252, 356, 439
EcoT14I	CCWWGG	3 cut(s)	184, 468, 519
ErhI	CCWWGG	3 cut(s)	184, 468, 519
FaeI	CATG	4 cut(s)	117, 166, 266, 472
FatI	CATG	4 cut(s)	113, 162, 262, 468
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	117, 166, 266, 472
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	5 cut(s)	25, 57, 450, 464, 561
Hpy166II	GTNNAC	3 cut(s)	250, 493, 595
Hpy188I	TCNGA	2 cut(s)	56, 688
Hpy188III	TCNNGA	2 cut(s)	454, 558
Hpy8I	GTNNAC	3 cut(s)	250, 493, 595
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	46, 250, 305, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	5 cut(s)	175, 446, 455, 654, 685
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	117, 166, 266, 472
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	554
MabI	ACCWGGT	1 cut(s)	252
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	461, 610
MalI	GATC	1 cut(s)	556
MboI	GATC	1 cut(s)	554
MboII	GAAGA	7 cut(s)	12, 133, 250, 251, 412, 680, 683
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	4 cut(s)	19, 66, 458, 570
MnlI	CCTC	6 cut(s)	146, 158, 182, 219, 392, 574
MseI	TTAA	1 cut(s)	309
MspR9I	CCNGG	4 cut(s)	74, 254, 358, 441
MvaI	CCWGG	4 cut(s)	74, 254, 358, 441
MvnI	CGCG	2 cut(s)	50, 62
MwoI	GCNNNNNNNGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	1 cut(s)	554
NlaIII	CATG	4 cut(s)	117, 166, 266, 472
NlaIV	GGNNCC	2 cut(s)	628, 660
NmuCI	GTSAC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	450
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	4 cut(s)	19, 65, 458, 569
PpsI	GAGTC	4 cut(s)	19, 65, 458, 569
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	4 cut(s)	72, 252, 356, 439
PspGI	CCWGG	4 cut(s)	72, 252, 356, 439
PspN4I	GGNNCC	2 cut(s)	628, 660
PspPI	GGNCC	4 cut(s)	70, 87, 627, 659
PspPPI	RGGWCCY	1 cut(s)	659
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	554
Sau96I	GGNCC	4 cut(s)	70, 87, 627, 659
SchI	GAGTC	4 cut(s)	19, 66, 458, 570
ScrFI	CCNGG	4 cut(s)	74, 254, 358, 441
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	7 cut(s)	38, 150, 219, 255, 521, 540, 683
SexAI	ACCWGGT	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	343, 663
SinI	GGWCC	3 cut(s)	70, 87, 659
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	3 cut(s)	6, 62, 105
StyD4I	CCNGG	4 cut(s)	72, 252, 356, 439
StyI	CCWWGG	3 cut(s)	184, 468, 519
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	23, 564
TaqII	GACCGA	1 cut(s)	634
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	401, 607
TseFI	GTSAC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	401, 607
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	70, 87, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.