Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Reverse (-)

28599491 .. 28601893

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G294100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGTTAAGGGTACCAGCAATTCCATTCACGTTTGTTGCACACACGCTTGCAATCGCAGCTTTGGTTCTGGTTTTGGTTTGGAACATACACTTCAGAGGTGGTTTCGCATGGGAAGCTACAAACAAGAACCTCATCTTCAACCTCCATCCTTTGCTCATGCTACTTGGTTTAATTATCTTGGGAGGAGAAGCCATTATTAGTTACAAATCACTTCCTTTGAAGAAACAGGTGAAGAAACTGATACACCTGGTTCTTCATGCTCTCGCGTTAGCCCTGGGTATCATTGGTATTTATGCTGCATTCAAGAACCATAATGAGAGTGGGATTGCCAACCTCTACAGCTTGCATTCCTGGATTGGGATTGGGGTCATTGTTCTCTATGGCATTCAGTGGATATATGGGTTCTTGATTTTCTTCTACCCTGGAGGAAGTTCTACCCTAAGGAGTGAGTGTATGCCATGGCATGTGGTATTTGGGCTCCTTGTGTACGTTTTGGCAGTGGCCAATGCTTCACTAGGGTTCTTAGAGAAGCTCACATTCCTTGAGAGCTCAGGAGTGGCTAAATTTGGCTCTGAGGCCTTTCTTGTCAACTTCACTGCTCTCACCACAATATTATTTGGAGTCTTCGTTGTAATTTCAGTTCTTTCTGAAGCTCCTGCTCCCATTGAAGATGACAACAGCTATTCATCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

233

Amino Acids

25.32

Weight (kDa)

7.9

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	13
AccII	CGCG	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	2 cut(s)	79, 672
AfaI	GTAC	2 cut(s)	15, 491
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	142, 223, 307, 671
AjnI	CCWGG	4 cut(s)	249, 276, 353, 424
AluBI	AGCT	7 cut(s)	62, 119, 345, 535, 552, 656, 684
AluI	AGCT	7 cut(s)	62, 119, 345, 535, 552, 656, 684
Alw21I	GWGCWC	1 cut(s)	554
AoxI	GGCC	2 cut(s)	504, 579
ApeKI	GCWGC	2 cut(s)	59, 299
ApoI	RAATTY	1 cut(s)	566
Asp718I	GGTACC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	244, 598
AxyI	CCTNAGG	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	506
BanI	GGYRCC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	483, 554
BbsI	GAAGAC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	71, 286
BccI	CCATC	1 cut(s)	156
BciT130I	CCWGG	4 cut(s)	251, 278, 355, 426
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	2 cut(s)	60, 300
BlsI	GCNGC	2 cut(s)	61, 301
Bme1390I	CCNGG	4 cut(s)	251, 278, 355, 426
BmiI	GGNNCC	2 cut(s)	15, 482
BmrFI	CCNGG	4 cut(s)	251, 278, 355, 426
BpiI	GAAGAC	1 cut(s)	619
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	553
BpuEI	CTTGAG	1 cut(s)	566
BsaJI	CCNNGG	4 cut(s)	276, 277, 424, 461
BsaXI	ACNNNNNCTCC	4 cut(s)	439, 469, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse21I	CCTNAGG	1 cut(s)	443
BseBI	CCWGG	4 cut(s)	251, 278, 355, 426
BseDI	CCNNGG	4 cut(s)	276, 277, 424, 461
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMII	CTCAG	2 cut(s)	567, 567
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	71, 286
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	506, 581
BshNI	GGYRCC	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmI	GAATGC	3 cut(s)	302, 349, 387
BsnI	GGCC	2 cut(s)	506, 581
Bsp1286I	GDGCHC	2 cut(s)	483, 554
Bsp19I	CCATGG	1 cut(s)	461
BspANI	GGCC	2 cut(s)	506, 581
BspCNI	CTCAG	2 cut(s)	566, 568
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	15, 482
BspT107I	GGYRCC	1 cut(s)	13
BssECI	CCNNGG	4 cut(s)	276, 277, 424, 461
BssT1I	CCWWGG	1 cut(s)	461
Bst2UI	CCWGG	4 cut(s)	251, 278, 355, 426
BstC8I	GCNNGC	2 cut(s)	51, 347
BstDEI	CTNAG	4 cut(s)	443, 526, 553, 576
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 116
BstNI	CCWGG	4 cut(s)	251, 278, 355, 426
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	4 cut(s)	249, 276, 353, 424
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	71, 286
BstV2I	GAAGAC	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	443
BsuRI	GGCC	2 cut(s)	506, 581
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	2 cut(s)	507, 597
BtsIMutI	CAGTG	3 cut(s)	398, 507, 597
Cac8I	GCNNGC	2 cut(s)	51, 347
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	14, 490
CviAII	CATG	5 cut(s)	111, 160, 260, 462, 467
CviQI	GTAC	2 cut(s)	14, 490
DdeI	CTNAG	4 cut(s)	443, 526, 553, 576
EaeI	YGGCCR	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	461
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	2 cut(s)	483, 554
Eco53kI	GAGCTC	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	79, 672
Eco81I	CCTNAGG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	552
EcoRII	CCWGG	4 cut(s)	249, 276, 353, 424
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	483, 554
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	5 cut(s)	114, 163, 263, 465, 470
FatI	CATG	5 cut(s)	110, 159, 259, 461, 466
Fnu4HI	GCNGC	2 cut(s)	60, 300
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	2 cut(s)	483, 554
Fsp4HI	GCNGC	2 cut(s)	60, 300
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	2 cut(s)	60, 300
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	506, 581
Hin1II	CATG	5 cut(s)	114, 163, 263, 465, 470
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	1 cut(s)	624
HphI	GGTGA	2 cut(s)	244, 598
Hpy166II	GTNNAC	2 cut(s)	490, 592
Hpy188I	TCNGA	3 cut(s)	98, 577, 652
Hpy188III	TCNNGA	3 cut(s)	307, 409, 555
Hpy8I	GTNNAC	2 cut(s)	490, 592
HpyCH4IV	ACGT	2 cut(s)	32, 492
HpyCH4V	TGCA	4 cut(s)	41, 53, 302, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 116
HpyF3I	CTNAG	4 cut(s)	443, 526, 553, 576
HpySE526I	ACGT	2 cut(s)	32, 492
Hsp92II	CATG	5 cut(s)	114, 163, 263, 465, 470
KpnI	GGTACC	1 cut(s)	17
LmnI	GCTCC	3 cut(s)	486, 661, 667
Lsp1109I	GCAGC	2 cut(s)	71, 286
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	2 cut(s)	32, 492
MaeIII	GTNAC	1 cut(s)	203
MboII	GAAGA	7 cut(s)	130, 235, 247, 248, 409, 619, 683
MhlI	GDGCHC	2 cut(s)	483, 554
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	4 cut(s)	21, 174, 566, 636
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	633
MnlI	CCTC	7 cut(s)	92, 143, 155, 179, 347, 422, 571
Mox20I	TGGCCA	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	2 cut(s)	8, 173
MslI	CAYNNNNRTG	1 cut(s)	694
Msp20I	TGGCCA	1 cut(s)	506
MspR9I	CCNGG	4 cut(s)	251, 278, 355, 426
Mva1269I	GAATGC	3 cut(s)	302, 349, 387
MvaI	CCWGG	4 cut(s)	251, 278, 355, 426
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	59, 116
NcoI	CCATGG	1 cut(s)	461
NlaIII	CATG	5 cut(s)	114, 163, 263, 465, 470
NlaIV	GGNNCC	2 cut(s)	15, 482
NspI	RCATGY	1 cut(s)	470
PasI	CCCWGGG	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	581
PctI	GAATGC	3 cut(s)	302, 349, 387
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	61, 301
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	554
Psp6I	CCWGG	4 cut(s)	249, 276, 353, 424
PspGI	CCWGG	4 cut(s)	249, 276, 353, 424
PspN4I	GGNNCC	2 cut(s)	15, 482
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
RsaI	GTAC	2 cut(s)	15, 491
RsaNI	GTAC	2 cut(s)	14, 490
RseI	CAYNNNNRTG	1 cut(s)	694
SacI	GAGCTC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	8, 173
SatI	GCNGC	2 cut(s)	60, 300
SchI	GAGTC	1 cut(s)	633
ScrFI	CCNGG	4 cut(s)	251, 278, 355, 426
SduI	GDGCHC	2 cut(s)	483, 554
SexAI	ACCWGGT	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	4 cut(s)	21, 174, 566, 636
SseBI	AGGCCT	1 cut(s)	581
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	554
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	249, 276, 353, 424
StyI	CCWWGG	1 cut(s)	461
TaiI	ACGT	2 cut(s)	35, 495
TasI	AATT	4 cut(s)	21, 174, 566, 636
Tru1I	TTAA	2 cut(s)	8, 173
Tru9I	TTAA	2 cut(s)	8, 173
TscAI	CASTG	3 cut(s)	398, 507, 604
TseI	GCWGC	2 cut(s)	59, 299
TspDTI	ATGAA	2 cut(s)	248, 678
TspRI	CASTG	3 cut(s)	398, 507, 604
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.