Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Reverse (-)

64622721 .. 64625505

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCCCGCCATAGGAGTATCTTCGACTCCATTGACGTTTGTAATGCACGCGCTCGGAGTCGCGGCTTTGGTCCTGGTTCTGGTTTGGTCCATATACTTCAGGGGCGGTTTCGCATGGGAAGCCACCGACAAGAGCCTCATCTTCAACCTCCATCCTTTTCTCATGGTATTGGGCTTAGTTTTCCTTGGAGGAGAAGCCATTATCAGTTATAGATACCTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTCGGTATAATCGGCATTTATACTGCATTTAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTCTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTCTTCTACCCAAAAGGAAGTCCAGGGCTGAGAAGTGACTCCATGGAACATTTTGGGCTTTTCGTGTACATTTTGGTCGTCGGCAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGATCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCCTTTGTGATATTCTCGGTCATTTCTCAGGGTCCTGTAGAAGAAGACCACAGCTACTCAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

228

Amino Acids

25.15

Weight (kDa)

6.43

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B561	PF03188	50 - 179	1.3e-41	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 62
AciI	CCGC	3 cut(s)	6, 62, 105
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	2 cut(s)	11, 79
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	4 cut(s)	72, 252, 356, 439
AluBI	AGCT	2 cut(s)	529, 672
AluI	AGCT	2 cut(s)	529, 672
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	317
Alw44I	GTGCAC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	618
ApaLI	GTGCAC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	4 cut(s)	70, 87, 618, 650
AvaII	GGWCC	3 cut(s)	70, 87, 650
BaeGI	GKGCMC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	1 cut(s)	159
BciT130I	CCWGG	4 cut(s)	74, 254, 358, 441
BcoDI	GTCTC	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	343, 654
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	74, 254, 358, 441
Bme18I	GGWCC	3 cut(s)	70, 87, 650
BmgT120I	GGNCC	4 cut(s)	70, 87, 618, 650
BmiI	GGNNCC	2 cut(s)	619, 651
BmrFI	CCNGG	4 cut(s)	74, 254, 358, 441
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	4 cut(s)	184, 440, 459, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 79
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	4 cut(s)	74, 254, 358, 441
BseDI	CCNNGG	4 cut(s)	184, 440, 459, 510
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	11, 79
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	437, 659
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	50, 62
BshFI	GGCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	11, 79
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	1 cut(s)	545
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	3 cut(s)	6, 62, 105
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	2 cut(s)	438, 658
BspFNI	CGCG	2 cut(s)	50, 62
BspLI	GGNNCC	2 cut(s)	619, 651
BsrDI	GCAATG	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	184, 440, 459, 510
BssMI	GATC	1 cut(s)	545
BssSI	CACGAG	1 cut(s)	608
BssT1I	CCWWGG	3 cut(s)	184, 459, 510
Bst2BI	CACGAG	1 cut(s)	608
Bst2UI	CCWGG	4 cut(s)	74, 254, 358, 441
Bst4CI	ACNGT	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	6, 48
BstDEI	CTNAG	4 cut(s)	175, 446, 645, 676
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	50, 62
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	548
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	545
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	4 cut(s)	74, 254, 358, 441
BstSCI	CCNGG	4 cut(s)	72, 252, 356, 439
BstSFI	CTRYAG	2 cut(s)	343, 654
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	2 cut(s)	50, 62
BstV2I	GAAGAC	1 cut(s)	669
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	401, 591
Cac8I	GCNNGC	2 cut(s)	6, 48
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	70, 87, 618, 650
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	4 cut(s)	114, 163, 263, 460
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	4 cut(s)	175, 446, 645, 676
DpnI	GATC	1 cut(s)	547
DpnII	GATC	1 cut(s)	545
Eco130I	CCWWGG	3 cut(s)	184, 459, 510
Eco47I	GGWCC	3 cut(s)	70, 87, 650
Eco57I	CTGAAG	1 cut(s)	82
EcoO109I	RGGNCCY	2 cut(s)	618, 650
EcoRII	CCWGG	4 cut(s)	72, 252, 356, 439
EcoT14I	CCWWGG	3 cut(s)	184, 459, 510
ErhI	CCWWGG	3 cut(s)	184, 459, 510
FaeI	CATG	4 cut(s)	117, 166, 266, 463
FatI	CATG	4 cut(s)	113, 162, 262, 459
FauI	CCCGC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	117, 166, 266, 463
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	4 cut(s)	25, 57, 455, 552
Hpy166II	GTNNAC	3 cut(s)	250, 484, 586
Hpy188I	TCNGA	2 cut(s)	56, 679
Hpy188III	TCNNGA	1 cut(s)	549
Hpy8I	GTNNAC	3 cut(s)	250, 484, 586
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	46, 250, 305, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	4 cut(s)	175, 446, 645, 676
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	117, 166, 266, 463
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	545
MabI	ACCWGGT	1 cut(s)	252
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	452, 601
MalI	GATC	1 cut(s)	547
MboI	GATC	1 cut(s)	545
MboII	GAAGA	7 cut(s)	12, 133, 250, 251, 412, 671, 674
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	4 cut(s)	19, 66, 449, 561
MnlI	CCTC	6 cut(s)	146, 158, 182, 219, 392, 565
MseI	TTAA	1 cut(s)	309
MspR9I	CCNGG	4 cut(s)	74, 254, 358, 441
MvaI	CCWGG	4 cut(s)	74, 254, 358, 441
MvnI	CGCG	2 cut(s)	50, 62
MwoI	GCNNNNNNNGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	1 cut(s)	545
NlaIII	CATG	4 cut(s)	117, 166, 266, 463
NlaIV	GGNNCC	2 cut(s)	619, 651
NmuCI	GTSAC	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	4 cut(s)	19, 65, 449, 560
PpsI	GAGTC	4 cut(s)	19, 65, 449, 560
PpuMI	RGGWCCY	1 cut(s)	650
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	4 cut(s)	72, 252, 356, 439
PspGI	CCWGG	4 cut(s)	72, 252, 356, 439
PspN4I	GGNNCC	2 cut(s)	619, 651
PspPI	GGNCC	4 cut(s)	70, 87, 618, 650
PspPPI	RGGWCCY	1 cut(s)	650
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	545
Sau96I	GGNCC	4 cut(s)	70, 87, 618, 650
SchI	GAGTC	4 cut(s)	19, 66, 449, 561
ScrFI	CCNGG	4 cut(s)	74, 254, 358, 441
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	7 cut(s)	38, 150, 219, 255, 512, 531, 674
SexAI	ACCWGGT	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	343, 654
SinI	GGWCC	3 cut(s)	70, 87, 650
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	3 cut(s)	6, 62, 105
StyD4I	CCNGG	4 cut(s)	72, 252, 356, 439
StyI	CCWWGG	3 cut(s)	184, 459, 510
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	23, 555
TaqII	GACCGA	1 cut(s)	625
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	401, 598
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	401, 598
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	70, 87, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.