Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Reverse (-)

21656349 .. 21658578

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCTTAGGAGTACCATCGACTCCGTTGACGTTCGTAGCGCACGGGCTCGGGGTCGCGGTTCTGGTTCTGGTTCTGGTCTGGTCTATATACTTCCGAGGTGGCTTCGCATGGGAAGCTACCAACAAGAACCTCATCTTCAACCTCCATCCTTTTCTCATGGTATTGGGATTAATTATCCTCGGAGGAGAAGCCATTATCAGTTACAAATCACTTCCTTTGAGGAAAGATGTGAAGAAAATAGTGCACCTGGTTCTTCATGCTATCGCACTAGTACTCGGCATAGTCGGCATTTGTGCTGCATTCAAGAACCACAATGAGTCTGGCGTTGCCAATCTTTACAGTCTCCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTGTTCTTCTACCCGAAAGGAAGTCCAGGACTAAGAAGCGAGTCAGTTCCATGGCATGTGATACTGGGGCTTCTCGTGTACGTTTTGGCCGTCGGCAATGCTACCTTGGGGTACTTGGAGAAGCTGACATTCCTCGAGAGCAGTGGACTCGAAAAGTATGGAAGCGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACAATATTGTTTGGGGTCTTTGTGATATTCTCAGTCATTTCTCAGGCTCCTGTGGATGACGACAACAGCTACTCAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

231

Amino Acids

25.06

Weight (kDa)

6.64

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_B561	PF03188	49 - 181	1.3e-48	Eukaryotic cytochrome b561

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AciI	CCGC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	498
AfaI	GTAC	4 cut(s)	15, 276, 491, 524
AgsI	TTSAA	2 cut(s)	142, 307
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	3 cut(s)	249, 353, 436
AluBI	AGCT	3 cut(s)	119, 535, 678
AluI	AGCT	3 cut(s)	119, 535, 678
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	350
Alw44I	GTGCAC	1 cut(s)	245
Ama87I	CYCGRG	2 cut(s)	50, 545
AoxI	GGCC	2 cut(s)	3, 498
ApaLI	GTGCAC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	299
AseI	ATTAAT	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	50, 545
AxyI	CCTNAGG	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	25, 156
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	3 cut(s)	251, 355, 438
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	3 cut(s)	251, 355, 438
BmeT110I	CYCGRG	2 cut(s)	50, 545
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	3 cut(s)	251, 355, 438
BmrI	ACTGGG	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	97, 181, 461, 516
Bse1I	ACTGG	1 cut(s)	480
Bse21I	CCTNAGG	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	3 cut(s)	251, 355, 438
BseDI	CCNNGG	4 cut(s)	97, 181, 461, 516
BseGI	GGATG	2 cut(s)	148, 670
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	654, 665
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	5, 500
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	2 cut(s)	50, 545
BsmAI	GTCTC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	5, 500
BsoBI	CYCGRG	2 cut(s)	50, 545
Bsp1286I	GDGCHC	2 cut(s)	51, 249
Bsp19I	CCATGG	1 cut(s)	461
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	5, 500
BspCNI	CTCAG	2 cut(s)	653, 664
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	4 cut(s)	97, 181, 461, 516
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	2 cut(s)	461, 516
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	3 cut(s)	251, 355, 438
Bst4CI	ACNGT	1 cut(s)	344
BstDEI	CTNAG	5 cut(s)	7, 443, 640, 651, 682
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	148, 670
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	350
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 288
BstNI	CCWGG	3 cut(s)	251, 355, 438
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	249, 353, 436
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	286
Bsu36I	CCTNAGG	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	5, 500
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	2 cut(s)	148, 670
BtsI	GCAGTG	2 cut(s)	559, 597
BtsIMutI	CAGTG	3 cut(s)	398, 559, 597
CfoI	GCGC	1 cut(s)	43
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	4 cut(s)	14, 275, 490, 523
CviAII	CATG	5 cut(s)	111, 160, 260, 462, 467
CviQI	GTAC	4 cut(s)	14, 275, 490, 523
DdeI	CTNAG	5 cut(s)	7, 443, 640, 651, 682
EaeI	YGGCCR	1 cut(s)	498
Eco130I	CCWWGG	2 cut(s)	461, 516
Eco24I	GRGCYC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	50, 545
EcoRII	CCWGG	3 cut(s)	249, 353, 436
EcoT14I	CCWWGG	2 cut(s)	461, 516
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	461, 516
FaeI	CATG	5 cut(s)	114, 163, 263, 465, 470
FatI	CATG	5 cut(s)	110, 159, 259, 461, 466
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	135, 677
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	5, 500
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	5 cut(s)	114, 163, 263, 465, 470
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	2 cut(s)	30, 592
HindII	GTYRAC	2 cut(s)	30, 592
HinfI	GANTC	4 cut(s)	22, 320, 452, 558
Hpy166II	GTNNAC	5 cut(s)	30, 247, 490, 557, 592
Hpy188I	TCNGA	3 cut(s)	98, 185, 685
Hpy188III	TCNNGA	2 cut(s)	307, 547
Hpy8I	GTNNAC	5 cut(s)	30, 247, 490, 557, 592
Hpy99I	CGWCG	1 cut(s)	506
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	2 cut(s)	32, 492
HpyCH4V	TGCA	2 cut(s)	247, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 288
HpyF3I	CTNAG	5 cut(s)	7, 443, 640, 651, 682
HpySE526I	ACGT	2 cut(s)	32, 492
Hsp92II	CATG	5 cut(s)	114, 163, 263, 465, 470
HspAI	GCGC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	1 cut(s)	286
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	2 cut(s)	32, 492
MaeIII	GTNAC	2 cut(s)	203, 607
MboII	GAAGA	4 cut(s)	130, 247, 248, 409
MhlI	GDGCHC	2 cut(s)	51, 249
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	4 cut(s)	16, 329, 461, 552
MnlI	CCTC	9 cut(s)	92, 143, 155, 179, 191, 216, 389, 554, 571
MseI	TTAA	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	251, 355, 438
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	3 cut(s)	251, 355, 438
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	116, 288
NcoI	CCATGG	1 cut(s)	461
NlaIII	CATG	5 cut(s)	114, 163, 263, 465, 470
NlaIV	GGNNCC	1 cut(s)	657
NmeAIII	GCCGAG	1 cut(s)	258
NspI	RCATGY	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	302
PfoI	TCCNGGA	2 cut(s)	353, 436
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	4 cut(s)	16, 328, 460, 552
PpsI	GAGTC	4 cut(s)	16, 328, 460, 552
PshBI	ATTAAT	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	249, 353, 436
PspGI	CCWGG	3 cut(s)	249, 353, 436
PspN4I	GGNNCC	1 cut(s)	657
RsaI	GTAC	4 cut(s)	15, 276, 491, 524
RsaNI	GTAC	4 cut(s)	14, 275, 490, 523
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	300
ScaI	AGTACT	1 cut(s)	276
SchI	GAGTC	4 cut(s)	16, 329, 461, 552
ScrFI	CCNGG	3 cut(s)	251, 355, 438
SduI	GDGCHC	2 cut(s)	51, 249
SexAI	ACCWGGT	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	545
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	3 cut(s)	249, 353, 436
StyI	CCWWGG	2 cut(s)	461, 516
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	2 cut(s)	35, 495
TaqI	TCGA	3 cut(s)	20, 546, 561
TasI	AATT	1 cut(s)	174
TatI	WGTACW	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	3 cut(s)	398, 559, 604
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	15
TspRI	CASTG	3 cut(s)	398, 559, 604
VneI	GTGCAC	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	173
XceI	RCATGY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	2 cut(s)	320, 356
XhoI	CTCGAG	1 cut(s)	545
XspI	CTAG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.