Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Forward (+)

27099 .. 27956

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggtattgggcttagttttccttggaggagaagccattatcagttatagataccttcctttgaggaaagatgtgaagaaattagtgcacctggttcttcatgctatcgcattagcactcggtataatcggcatttatactgcatttaagaaccacaatgagattggggttgccaatctctacagtctgcactcctggattggcattggggttatttgcctctatggtattcagtggatatatgggttcttggtattcttctacccaaaaggaagtccagggctgagaagtgactccatggaacattttgggcttttcgtatacattttggtcgtcggcaatgctaccttggggttcttggagaagctcacattcctagagagctcaggagtcgaaaagtttggaagtgaggcatttcttgtcaacttcactgctctggttacactcgtgtttggggcctttgtgatattattctcggtcatttctcagggtcctgtagaagaagcccacagctacacagatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

175

Amino Acids

19.28

Weight (kDa)

6.28

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AjnI	CCWGG	3 cut(s)	90, 194, 277
AluBI	AGCT	3 cut(s)	367, 384, 513
AluI	AGCT	3 cut(s)	367, 384, 513
Alw21I	GWGCWC	2 cut(s)	90, 386
Alw44I	GTGCAC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	456
ApaLI	GTGCAC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	456, 491
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	386
BauI	CACGAG	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	90, 386
BciT130I	CCWGG	3 cut(s)	92, 196, 279
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	181, 495
Bme1390I	CCNGG	3 cut(s)	92, 196, 279
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	2 cut(s)	456, 491
BmiI	GGNNCC	2 cut(s)	457, 492
BmrFI	CCNGG	3 cut(s)	92, 196, 279
Bpu10I	CCTNAGC	1 cut(s)	385
BsaJI	CCNNGG	4 cut(s)	22, 278, 297, 348
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	3 cut(s)	92, 196, 279
BseDI	CCNNGG	4 cut(s)	22, 278, 297, 348
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	3 cut(s)	275, 399, 500
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	458
BsiHKAI	GWGCWC	2 cut(s)	90, 386
BsnI	GGCC	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	90, 386
Bsp19I	CCATGG	1 cut(s)	297
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	3 cut(s)	276, 398, 499
BspLI	GGNNCC	2 cut(s)	457, 492
BsrDI	GCAATG	1 cut(s)	346
BssECI	CCNNGG	4 cut(s)	22, 278, 297, 348
BssNAI	GTATAC	1 cut(s)	322
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	3 cut(s)	22, 297, 348
Bst1107I	GTATAC	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	3 cut(s)	92, 196, 279
Bst4CI	ACNGT	1 cut(s)	185
BstDEI	CTNAG	4 cut(s)	13, 284, 385, 486
BstDSI	CCRYGG	1 cut(s)	297
BstNI	CCWGG	3 cut(s)	92, 196, 279
BstSCI	CCNGG	3 cut(s)	90, 194, 277
BstSFI	CTRYAG	2 cut(s)	181, 495
BstSLI	GKGCMC	1 cut(s)	90
BstZ17I	GTATAC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	239, 429
Cfr13I	GGNCC	2 cut(s)	456, 491
CsiI	ACCWGGT	1 cut(s)	90
CviAII	CATG	2 cut(s)	101, 298
CviJI	RGCY	9 cut(s)	12, 35, 283, 313, 367, 384, 458, 506, 513
CviKI_1	RGCY	9 cut(s)	12, 35, 283, 313, 367, 384, 458, 506, 513
DdeI	CTNAG	4 cut(s)	13, 284, 385, 486
Ecl136II	GAGCTC	1 cut(s)	384
Eco130I	CCWWGG	3 cut(s)	22, 297, 348
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	384
EcoO109I	RGGNCCY	2 cut(s)	456, 491
EcoRII	CCWGG	3 cut(s)	90, 194, 277
EcoT14I	CCWWGG	3 cut(s)	22, 297, 348
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	3 cut(s)	22, 297, 348
FaeI	CATG	2 cut(s)	104, 301
FatI	CATG	2 cut(s)	100, 297
FblI	GTMKAC	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	458
Hin1II	CATG	2 cut(s)	104, 301
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	293, 390
Hpy166II	GTNNAC	3 cut(s)	88, 322, 424
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	3 cut(s)	88, 322, 424
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	88, 143, 190
HpyF3I	CTNAG	4 cut(s)	13, 284, 385, 486
Hsp92II	CATG	2 cut(s)	104, 301
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	290, 439
MboII	GAAGA	4 cut(s)	88, 89, 250, 512
MhlI	GDGCHC	2 cut(s)	90, 386
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	287, 399
MnlI	CCTC	4 cut(s)	20, 57, 230, 403
MseI	TTAA	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	92, 196, 279
MvaI	CCWGG	3 cut(s)	92, 196, 279
NcoI	CCATGG	1 cut(s)	297
NlaIII	CATG	2 cut(s)	104, 301
NlaIV	GGNNCC	2 cut(s)	457, 492
NmuCI	GTSAC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	194
PleI	GAGTC	2 cut(s)	287, 398
PpsI	GAGTC	2 cut(s)	287, 398
PpuMI	RGGWCCY	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	3 cut(s)	90, 194, 277
PspGI	CCWGG	3 cut(s)	90, 194, 277
PspN4I	GGNNCC	2 cut(s)	457, 492
PspPI	GGNCC	2 cut(s)	456, 491
PspPPI	RGGWCCY	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	456, 491
SchI	GAGTC	2 cut(s)	287, 399
ScrFI	CCNGG	3 cut(s)	92, 196, 279
SduI	GDGCHC	2 cut(s)	90, 386
SetI	ASST	6 cut(s)	57, 93, 350, 369, 386, 515
SexAI	ACCWGGT	1 cut(s)	90
SfcI	CTRYAG	2 cut(s)	181, 495
SinI	GGWCC	1 cut(s)	491
Sse9I	AATT	1 cut(s)	80
SspMI	CTAG	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	90, 194, 277
StyI	CCWWGG	3 cut(s)	22, 297, 348
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	393
TaqII	GACCGA	1 cut(s)	466
TasI	AATT	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	239, 436
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	239, 436
VneI	GTGCAC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.