Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Forward (+)

50996627 .. 50998664

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0402400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTCGCCGGCGGCCGGAGTTCACGCGCCACTGCTGCCGGAGAACAAGAAAGTAAGGCATGGAGGCTCGGTTTCCGGGGCGGTGTTCAATGTTTCGACTAGCATTATTGGTGCTGGGATTATGTCCATACCTGCCACTCTTAAGGTGTTGGGGGTCATACCGGCCTTTGTGCTCATTGTGATCATTGCTTTCTTGGCCGACGTTTCGGTAGAGTTTCTGATGAGGTTTACGCATTCCGGCGAGACGAGGACGTACGCCGGTGTCATGAGGGAGTCGTTTGGGGAGGTCGGATCGGTTGCAACACAAGTATGTGTTATGATCACTAATCTAGGGTGCTTGATCATGTACCAGATTATAATAGGGGATGTCCTTTCTGGAAATAAAACGGGGCATTTGGGTGTTCTGCAAGAATGGTTTGGAGTTCAGTGGTGGAACTCACGTGACATCGCTCTCATGTTCACTCTGGTTTTGATAATGCTACCGTTGGTGTTGTTAAGGCGTGTAGAATCTCTGAGGTTCAGTTCAGCTATATCAGTTCTTCTTGCTGTGGTTTTTGTTGGGATAAGTTCTGCAATGGCAATCCTCGCAATCTTTGAAGGGAAAACCAAAACCCCAAGATTGGTTCCAAGTTTAGACCAACAAACCACCTTCTTTGATCTGTTCACTGCTGTTCCAGTCATTGTGACAGCCTTCACTTTTCATTTCAATGTTCACCCTATCGGTTTCGAGCTTGGGAAGCCTTCAGATATGATCTTGGCTGTCCAAATCTCATTAGTGCTTTGTGCAGCCATCTACTTCACCATAGGACTATTTGGGTACCTATTGTTTGGGGATTCAATCATGCCTGACATACTTGTAAACTTTGATAGAAGCTCTGATTCAGCAATGGGGGCACTACTTAATGATGTGGTCAGATTGAGCTATGCACTCCACTTGATGTTGGTGTTTCCACTCTTGAACTTCTCTTTAAGAGCAAACTTGGATGAGTTTCTTTTCCCTAAGAAACCACTACTGGCAACGGATACCAAAAGATTTATGTTCCTCACTTTTGGTTTGCTAGTCTTTTCTTACCTAGCAGCAATAGCATTCCCAAACATTTGGTATCTCTTTCAGTTTCTGGGTTCAACCTCTGCAGTCTGCCTTGCATTCATTTTCCCTGGTGCTATTGTTCTGAGGGATGTACATGGGATATCTACAAAGAGGGATAAGATCATGGCGACGATAATGGTATTCCTGGCAGTAGTAACAAGCGCAATTGCCATTTCCACCAATGTGTATAACTCATTCGGAAACAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

433

Amino Acids

47.24

Weight (kDa)

8.62

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	20 - 418	8.1e-51	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	23 - 254	7.6e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	139
Acc65I	GGTACC	1 cut(s)	816
AccB1I	GGYRCC	1 cut(s)	816
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	11, 80
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	2 cut(s)	12, 195
AcuI	CTGAAG	1 cut(s)	726
AcvI	CACGTG	1 cut(s)	440
AfaI	GTAC	4 cut(s)	254, 347, 818, 1182
AfiI	CCNNNNNNNGG	2 cut(s)	14, 619
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	6 cut(s)	88, 596, 706, 837, 958, 1125
AjnI	CCWGG	2 cut(s)	1156, 1233
AleI	CACNNNNGTG	1 cut(s)	1271
AluBI	AGCT	4 cut(s)	527, 730, 873, 921
AluI	AGCT	4 cut(s)	527, 730, 873, 921
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	1117
AoxI	GGCC	3 cut(s)	12, 162, 195
ApeKI	GCWGC	3 cut(s)	34, 785, 1076
Asp718I	GGTACC	1 cut(s)	816
AspLEI	GCGC	2 cut(s)	28, 1253
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	704, 790
BaeGI	GKGCMC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	816
BbrPI	CACGTG	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	21, 797, 1088
BccI	CCATC	1 cut(s)	797
BciT130I	CCWGG	2 cut(s)	1158, 1235
BciVI	GTATCC	1 cut(s)	1015
BclI	TGATCA	3 cut(s)	180, 318, 339
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	4 cut(s)	99, 329, 1058, 1073
BfmI	CTRYAG	1 cut(s)	1131
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	1015
BisI	GCNGC	4 cut(s)	12, 35, 786, 1077
BlsI	GCNGC	4 cut(s)	13, 36, 787, 1078
Bme1390I	CCNGG	3 cut(s)	76, 1158, 1235
BmiI	GGNNCC	2 cut(s)	624, 818
BmrFI	CCNGG	3 cut(s)	76, 1158, 1235
BpuMI	CCSGG	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	75, 1156
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 619
Bse118I	RCCGGY	3 cut(s)	7, 160, 257
Bse1I	ACTGG	2 cut(s)	674, 1017
Bse3DI	GCAATG	3 cut(s)	183, 579, 891
BseBI	CCWGG	2 cut(s)	1158, 1235
BseDI	CCNNGG	2 cut(s)	75, 1156
BseGI	GGATG	3 cut(s)	370, 988, 1183
BseLI	CCNNNNNNNGG	2 cut(s)	14, 619
BseMI	GCAATG	3 cut(s)	183, 579, 891
BseMII	CTCAG	2 cut(s)	503, 1163
BseNI	ACTGG	2 cut(s)	674, 1017
BseSI	GKGCMC	1 cut(s)	895
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	21, 797, 1088
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	14, 164, 197
BshNI	GGYRCC	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	7 cut(s)	8, 15, 38, 75, 161, 237, 258
BsiWI	CGTACG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	14, 619
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmI	GAATGC	3 cut(s)	232, 1085, 1145
BsnI	GGCC	3 cut(s)	14, 164, 197
Bsp1286I	GDGCHC	2 cut(s)	174, 895
Bsp1407I	TGTACA	1 cut(s)	1180
Bsp143I	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
BspACI	CCGC	2 cut(s)	11, 80
BspANI	GGCC	3 cut(s)	14, 164, 197
BspCNI	CTCAG	2 cut(s)	504, 1164
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	624, 818
BspMAI	CTGCAG	1 cut(s)	1135
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	816
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	3 cut(s)	183, 579, 891
BsrFI	RCCGGY	3 cut(s)	7, 160, 257
BsrGI	TGTACA	1 cut(s)	1180
BsrI	ACTGG	2 cut(s)	674, 1017
BssAI	RCCGGY	3 cut(s)	7, 160, 257
BssECI	CCNNGG	2 cut(s)	75, 1156
BssMI	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
Bst2UI	CCWGG	2 cut(s)	1158, 1235
Bst4CI	ACNGT	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	1180
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	512, 999, 1172
BstF5I	GGATG	3 cut(s)	370, 988, 1183
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	28, 1253
BstKTI	GATC	7 cut(s)	183, 293, 321, 342, 658, 753, 1212
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 194, 584, 736, 890, 1082
BstNI	CCWGG	2 cut(s)	1158, 1235
BstSCI	CCNGG	3 cut(s)	74, 1156, 1233
BstSFI	CTRYAG	1 cut(s)	1131
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	21, 797, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	1098
BstZI	CGGCCG	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	3 cut(s)	14, 164, 197
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	370, 988, 1183
BtsI	GCAGTG	2 cut(s)	29, 663
BtsIMutI	CAGTG	3 cut(s)	29, 431, 663
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	1117
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	2 cut(s)	28, 1253
Cfr10I	RCCGGY	3 cut(s)	7, 160, 257
Csp6I	GTAC	4 cut(s)	253, 346, 817, 1181
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	7 cut(s)	59, 265, 343, 454, 841, 1184, 1213
CviQI	GTAC	4 cut(s)	253, 346, 817, 1181
DdeI	CTNAG	3 cut(s)	512, 999, 1172
DpnI	GATC	7 cut(s)	182, 292, 320, 341, 657, 752, 1211
DpnII	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
EaeI	YGGCCR	2 cut(s)	12, 195
EagI	CGGCCG	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	1191
Eco52I	CGGCCG	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	726
Eco72I	CACGTG	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	1156, 1233
EcoRV	GATATC	1 cut(s)	1191
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	7 cut(s)	62, 268, 346, 457, 844, 1187, 1216
FatI	CATG	7 cut(s)	58, 264, 342, 453, 840, 1183, 1212
FbaI	TGATCA	3 cut(s)	180, 318, 339
Fnu4HI	GCNGC	4 cut(s)	12, 35, 786, 1077
FokI	GGATG	3 cut(s)	377, 995, 1190
Fsp4HI	GCNGC	4 cut(s)	12, 35, 786, 1077
FspBI	CTAG	4 cut(s)	99, 329, 1058, 1073
GlaI	GCGC	2 cut(s)	27, 1252
GluI	GCNGC	4 cut(s)	12, 35, 786, 1077
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	14, 164, 197
HapII	CCGG	7 cut(s)	8, 15, 38, 75, 161, 237, 258
HhaI	GCGC	2 cut(s)	28, 1253
Hin1II	CATG	7 cut(s)	62, 268, 346, 457, 844, 1187, 1216
Hin6I	GCGC	2 cut(s)	26, 1251
HinP1I	GCGC	2 cut(s)	26, 1251
HinfI	GANTC	4 cut(s)	272, 506, 833, 878
HpaII	CCGG	7 cut(s)	8, 15, 38, 75, 161, 237, 258
HphI	GGTGA	2 cut(s)	704, 790
Hpy166II	GTNNAC	6 cut(s)	22, 228, 459, 663, 712, 859
Hpy188I	TCNGA	8 cut(s)	219, 290, 513, 745, 877, 914, 1173, 1289
Hpy188III	TCNNGA	3 cut(s)	265, 375, 955
Hpy8I	GTNNAC	6 cut(s)	22, 228, 459, 663, 712, 859
Hpy99I	CGWCG	2 cut(s)	203, 1222
HpyAV	CCTTC	4 cut(s)	590, 658, 700, 750
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4IV	ACGT	3 cut(s)	201, 251, 439
HpyCH4V	TGCA	7 cut(s)	299, 406, 572, 785, 926, 1133, 1145
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 194, 584, 736, 890, 1082
HpyF3I	CTNAG	3 cut(s)	512, 999, 1172
HpySE526I	ACGT	3 cut(s)	201, 251, 439
Hsp92II	CATG	7 cut(s)	62, 268, 346, 457, 844, 1187, 1216
HspAI	GCGC	2 cut(s)	26, 1251
KpnI	GGTACC	1 cut(s)	820
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Ksp22I	TGATCA	3 cut(s)	180, 318, 339
Kzo9I	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
Lsp1109I	GCAGC	3 cut(s)	21, 797, 1088
MaeI	CTAG	4 cut(s)	99, 329, 1058, 1073
MaeII	ACGT	3 cut(s)	201, 251, 439
MaeIII	GTNAC	3 cut(s)	440, 682, 1243
MalI	GATC	7 cut(s)	182, 292, 320, 341, 657, 752, 1211
MboI	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
MboII	GAAGA	1 cut(s)	530
MfeI	CAATTG	1 cut(s)	1254
MhlI	GDGCHC	2 cut(s)	174, 895
MluCI	AATT	1 cut(s)	1254
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	268
MreI	CGCCGGCG	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	4 cut(s)	141, 494, 900, 968
MslI	CAYNNNNRTG	4 cut(s)	307, 396, 705, 1271
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	7 cut(s)	8, 15, 38, 75, 161, 237, 258
MspR9I	CCNGG	3 cut(s)	76, 1158, 1235
MunI	CAATTG	1 cut(s)	1254
Mva1269I	GAATGC	3 cut(s)	232, 1085, 1145
MvaI	CCWGG	2 cut(s)	1158, 1235
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	6 cut(s)	34, 194, 584, 736, 890, 1082
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	7 cut(s)	62, 268, 346, 457, 844, 1187, 1216
NlaIV	GGNNCC	2 cut(s)	624, 818
NmuCI	GTSAC	2 cut(s)	440, 682
OliI	CACNNNNGTG	1 cut(s)	1271
PagI	TCATGA	1 cut(s)	264
PctI	GAATGC	3 cut(s)	232, 1085, 1145
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	506, 833, 878
Pfl23II	CGTACG	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	13, 36, 787, 1078
PleI	GAGTC	1 cut(s)	280
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	280
Ppu21I	YACGTR	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	1156, 1233
PspCI	CACGTG	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	1156, 1233
PspLI	CGTACG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	624, 818
PstI	CTGCAG	1 cut(s)	1135
PstNI	CAGNNNCTG	1 cut(s)	1117
RsaI	GTAC	4 cut(s)	254, 347, 818, 1182
RsaNI	GTAC	4 cut(s)	253, 346, 817, 1181
RseI	CAYNNNNRTG	4 cut(s)	307, 396, 705, 1271
SaqAI	TTAA	4 cut(s)	141, 494, 900, 968
SatI	GCNGC	4 cut(s)	12, 35, 786, 1077
Sau3AI	GATC	7 cut(s)	180, 290, 318, 339, 655, 750, 1209
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	3 cut(s)	76, 1158, 1235
SduI	GDGCHC	2 cut(s)	174, 895
SfcI	CTRYAG	1 cut(s)	1131
SgrAI	CRCCGGYG	2 cut(s)	7, 257
SmiMI	CAYNNNNRTG	4 cut(s)	307, 396, 705, 1271
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	1254
SsiI	CCGC	2 cut(s)	11, 80
SspMI	CTAG	4 cut(s)	99, 329, 1058, 1073
StyD4I	CCNGG	3 cut(s)	74, 1156, 1233
TaaI	ACNGT	1 cut(s)	483
TaiI	ACGT	3 cut(s)	204, 254, 442
TaqI	TCGA	2 cut(s)	95, 726
TasI	AATT	1 cut(s)	1254
TatI	WGTACW	1 cut(s)	1180
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	3 cut(s)	506, 833, 878
Tru1I	TTAA	4 cut(s)	141, 494, 900, 968
Tru9I	TTAA	4 cut(s)	141, 494, 900, 968
TscAI	CASTG	3 cut(s)	36, 431, 670
TseFI	GTSAC	2 cut(s)	440, 682
TseI	GCWGC	3 cut(s)	34, 785, 1076
Tsp45I	GTSAC	2 cut(s)	440, 682
TspDTI	ATGAA	2 cut(s)	689, 1138
TspGWI	ACGGA	1 cut(s)	1034
TspRI	CASTG	3 cut(s)	36, 431, 670
Vha464I	CTTAAG	1 cut(s)	140
XspI	CTAG	4 cut(s)	99, 329, 1058, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.