RLG00000026534

Cytochrome b-561 / ferric reductase transmembrane domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007411
Physical Location & Seq
Forward (+)
3655803 .. 3658248
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026534

Sequence Viewer

Length: 930 bp
ATGGCAGAGGCAGAGGAACCCAAGAAGCAGGTACTAGAATCCGAAAAACCCTCCGATCTTCCTCCAGCTCCGGCCACTGCTACAACATCATCAGAAGAGAAGCCGGCGGTTGTGGAAGCTCCGAAAGAGGAGTACAAAGAGAAATCAGAAGAGAAGGCGCCGGAGCCTAAAGATGAGTCGAAAGCTCTTGCTATTGCTGAGAAGGGAGAGAGAGAGAGAGAAAGAACAAAGGAGAAAGAGAGAAATGCCGGCCTTAGGAGTATCATCGACTTTGTAGTGCACGCGCTCGGAGTCGCGGCTTTGGTCCTGGTGCTGGTTTGGTCCATATACTTCAGGGGCGGTTTCGCATGGGAAGCCACCGACAAGAGGCTCATCTTCAACCTCCATCCTTTTCTCATGGTATTGGGCTTAGTTTTCTTTGGAGGAGAAGCCATTATCAGTTATAGATCACTTCCTTTGAGGAAAGATGTGAAGAAATTAGTGCACCTGGTTCTTCATGCTATCGCATTAGCACTCGGTATAATCGGCATTTATACTGCATTCAAGAACCACAATGAGACTGGGGTTGCCAATCTCTACAGTCTGCACTCCTGGATTGGCATTGGGGTTATTTGCCTCTATGGTATTCAGTGGATATATGGGTTCTTGGTATTATTCTACCCAAAAGGAAGTCCAGGTCTGAGAAGTGACTCGGTTCCATGGCATGTGCTTTTTGGGCTTCTCGTGTACATTTTGGTCGTCGGCAATGCTACCTTGGGGTTCTTGGAGAAGCTCACATTCCTTGAGAGCTCAGGAGTCGAAAAGTTTGGAAGTGAGGCATTTCTTGTCAACTTCACTGCTCTGGTTACACTCGTGTTTGGGGCCTTTGTGATATTCTCGGTCATTTCTCAGGGTCCTGTAGAAGAAGACCACAGCTACTCAGAAATATGA

Protein Analysis

310

Amino Acids

34.18

Weight (kDa)

5.7

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 128 - 260 1.4e-46 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 157
AccII CGCG 2 cut(s) 284, 296
AciI CCGC 3 cut(s) 107, 296, 339
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 3 cut(s) 33, 134, 728
AfiI CCNNNNNNNGG 3 cut(s) 255, 313, 366
AgsI TTSAA 2 cut(s) 379, 544
AjnI CCWGG 4 cut(s) 306, 486, 590, 673
AluBI AGCT 6 cut(s) 68, 119, 185, 772, 789, 915
AluI AGCT 6 cut(s) 68, 119, 185, 772, 789, 915
Alw21I GWGCWC 3 cut(s) 282, 486, 791
Alw26I GTCTC 1 cut(s) 551
Alw44I GTGCAC 2 cut(s) 278, 482
AoxI GGCC 3 cut(s) 72, 250, 861
ApaLI GTGCAC 2 cut(s) 278, 482
AspLEI GCGC 2 cut(s) 160, 286
AspS9I GGNCC 4 cut(s) 304, 321, 861, 893
AvaII GGWCC 3 cut(s) 304, 321, 893
AxyI CCTNAGG 1 cut(s) 254
BaeGI GKGCMC 2 cut(s) 282, 486
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 791
BauI CACGAG 2 cut(s) 722, 851
BbsI GAAGAC 1 cut(s) 912
Bbv12I GWGCWC 3 cut(s) 282, 486, 791
BccI CCATC 1 cut(s) 393
BciT130I CCWGG 4 cut(s) 308, 488, 592, 675
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 577, 897
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 4 cut(s) 308, 488, 592, 675
Bme18I GGWCC 3 cut(s) 304, 321, 893
BmgT120I GGNCC 4 cut(s) 304, 321, 861, 893
BmiI GGNNCC 6 cut(s) 18, 159, 165, 696, 862, 894
BmrFI CCNGG 4 cut(s) 308, 488, 592, 675
BmrI ACTGGG 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 912
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 790
BpuEI CTTGAG 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 698, 753
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 313, 366
Bse118I RCCGGY 2 cut(s) 103, 248
Bse1I ACTGG 1 cut(s) 565
Bse21I CCTNAGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 4 cut(s) 308, 488, 592, 675
BseDI CCNNGG 2 cut(s) 698, 753
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 255, 313, 366
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 4 cut(s) 189, 671, 804, 902
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 143, 438
BseSI GKGCMC 2 cut(s) 282, 486
BsgI GTGCAG 1 cut(s) 569
Bsh1236I CGCG 2 cut(s) 284, 296
BshFI GGCC 3 cut(s) 74, 252, 863
BshNI GGYRCC 1 cut(s) 157
BsiHKAI GWGCWC 3 cut(s) 282, 486, 791
BsiSI CCGG 4 cut(s) 71, 104, 161, 249
BslI CCNNNNNNNGG 3 cut(s) 255, 313, 366
BsmAI GTCTC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 3 cut(s) 74, 252, 863
Bsp1286I GDGCHC 3 cut(s) 282, 486, 791
Bsp1407I TGTACA 1 cut(s) 726
Bsp143I GATC 2 cut(s) 55, 446
Bsp19I CCATGG 1 cut(s) 698
BspACI CCGC 3 cut(s) 107, 296, 339
BspANI GGCC 3 cut(s) 74, 252, 863
BspCNI CTCAG 4 cut(s) 190, 672, 803, 901
BspFNI CGCG 2 cut(s) 284, 296
BspLI GGNNCC 6 cut(s) 18, 159, 165, 696, 862, 894
BspMI ACCTGC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 751
BsrFI RCCGGY 2 cut(s) 103, 248
BsrGI TGTACA 1 cut(s) 726
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 2 cut(s) 103, 248
BssECI CCNNGG 2 cut(s) 698, 753
BssMI GATC 2 cut(s) 55, 446
BssNI GRCGYC 1 cut(s) 158
BssSI CACGAG 2 cut(s) 722, 851
BssT1I CCWWGG 2 cut(s) 698, 753
Bst2BI CACGAG 2 cut(s) 722, 851
Bst2UI CCWGG 4 cut(s) 308, 488, 592, 675
Bst4CI ACNGT 1 cut(s) 581
Bst6I CTCTTC 2 cut(s) 90, 144
BstACI GRCGYC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 726
BstC8I GCNNGC 3 cut(s) 105, 250, 282
BstDEI CTNAG 7 cut(s) 198, 254, 409, 680, 790, 888, 919
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 2 cut(s) 284, 296
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 160, 286
BstKTI GATC 2 cut(s) 58, 449
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 2 cut(s) 55, 446
BstMWI GCNNNNNNNGC 2 cut(s) 353, 715
BstNI CCWGG 4 cut(s) 308, 488, 592, 675
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 4 cut(s) 306, 486, 590, 673
BstSFI CTRYAG 2 cut(s) 577, 897
BstSLI GKGCMC 2 cut(s) 282, 486
BstUI CGCG 2 cut(s) 284, 296
BstV2I GAAGAC 1 cut(s) 912
Bsu36I CCTNAGG 1 cut(s) 254
BsuRI GGCC 3 cut(s) 74, 252, 863
BtgI CCRYGG 1 cut(s) 698
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 2 cut(s) 75, 834
BtsIMutI CAGTG 3 cut(s) 75, 635, 834
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 105, 250, 282
CfoI GCGC 2 cut(s) 160, 286
Cfr10I RCCGGY 2 cut(s) 103, 248
Cfr13I GGNCC 4 cut(s) 304, 321, 861, 893
CsiI ACCWGGT 1 cut(s) 486
Csp6I GTAC 3 cut(s) 32, 133, 727
CviAII CATG 5 cut(s) 348, 397, 497, 699, 704
CviQI GTAC 3 cut(s) 32, 133, 727
DdeI CTNAG 7 cut(s) 198, 254, 409, 680, 790, 888, 919
DinI GGCGCC 1 cut(s) 159
DpnI GATC 2 cut(s) 57, 448
DpnII GATC 2 cut(s) 55, 446
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 90, 144
EarI CTCTTC 2 cut(s) 90, 144
Ecl136II GAGCTC 1 cut(s) 789
Eco130I CCWWGG 2 cut(s) 698, 753
Eco24I GRGCYC 1 cut(s) 791
Eco47I GGWCC 3 cut(s) 304, 321, 893
Eco53kI GAGCTC 1 cut(s) 789
Eco57I CTGAAG 1 cut(s) 316
Eco81I CCTNAGG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 789
EcoO109I RGGNCCY 2 cut(s) 861, 893
EcoRII CCWGG 4 cut(s) 306, 486, 590, 673
EcoT14I CCWWGG 2 cut(s) 698, 753
EcoT38I GRGCYC 1 cut(s) 791
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 698, 753
FaeI CATG 5 cut(s) 351, 400, 500, 702, 707
FatI CATG 5 cut(s) 347, 396, 496, 698, 703
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 791
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 159, 285
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 74, 252, 863
HapII CCGG 4 cut(s) 71, 104, 161, 249
HhaI GCGC 2 cut(s) 160, 286
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 5 cut(s) 351, 400, 500, 702, 707
Hin6I GCGC 2 cut(s) 158, 284
HinP1I GCGC 2 cut(s) 158, 284
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HinfI GANTC 5 cut(s) 38, 176, 291, 689, 795
HpaII CCGG 4 cut(s) 71, 104, 161, 249
Hpy166II GTNNAC 4 cut(s) 280, 484, 727, 829
Hpy188I TCNGA 8 cut(s) 43, 55, 94, 123, 148, 290, 681, 922
Hpy188III TCNNGA 2 cut(s) 544, 792
Hpy8I GTNNAC 4 cut(s) 280, 484, 727, 829
Hpy99I CGWCG 1 cut(s) 743
HpyAV CCTTC 2 cut(s) 148, 196
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4V TGCA 4 cut(s) 280, 484, 539, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 715
HpyF3I CTNAG 7 cut(s) 198, 254, 409, 680, 790, 888, 919
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 5 cut(s) 351, 400, 500, 702, 707
HspAI GCGC 2 cut(s) 158, 284
KasI GGCGCC 1 cut(s) 157
KroI GCCGGC 2 cut(s) 103, 248
KroNI GCCGGC 2 cut(s) 105, 250
Kzo9I GATC 2 cut(s) 55, 446
LmnI GCTCC 3 cut(s) 73, 124, 163
MabI ACCWGGT 1 cut(s) 486
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 686, 844
MalI GATC 2 cut(s) 57, 448
MboI GATC 2 cut(s) 55, 446
MboII GAAGA 8 cut(s) 50, 107, 161, 367, 484, 485, 914, 917
MhlI GDGCHC 3 cut(s) 282, 486, 791
MluCI AATT 1 cut(s) 476
Mly113I GGCGCC 1 cut(s) 158
MlyI GAGTC 4 cut(s) 185, 300, 683, 804
MroNI GCCGGC 2 cut(s) 103, 248
MspI CCGG 4 cut(s) 71, 104, 161, 249
MspR9I CCNGG 4 cut(s) 308, 488, 592, 675
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 4 cut(s) 308, 488, 592, 675
MvnI CGCG 2 cut(s) 284, 296
MwoI GCNNNNNNNGC 2 cut(s) 353, 715
NaeI GCCGGC 2 cut(s) 105, 250
NarI GGCGCC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 698
NdeII GATC 2 cut(s) 55, 446
NgoMIV GCCGGC 2 cut(s) 103, 248
NlaIII CATG 5 cut(s) 351, 400, 500, 702, 707
NlaIV GGNNCC 6 cut(s) 18, 159, 165, 696, 862, 894
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 1 cut(s) 707
PctI GAATGC 1 cut(s) 539
PdiI GCCGGC 2 cut(s) 105, 250
PfeI GAWTC 1 cut(s) 38
PfoI TCCNGGA 1 cut(s) 590
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 4 cut(s) 184, 299, 683, 803
PluTI GGCGCC 1 cut(s) 161
PpsI GAGTC 4 cut(s) 184, 299, 683, 803
PpuMI RGGWCCY 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 791
Psp5II RGGWCCY 1 cut(s) 893
Psp6I CCWGG 4 cut(s) 306, 486, 590, 673
PspGI CCWGG 4 cut(s) 306, 486, 590, 673
PspN4I GGNNCC 6 cut(s) 18, 159, 165, 696, 862, 894
PspPI GGNCC 4 cut(s) 304, 321, 861, 893
PspPPI RGGWCCY 1 cut(s) 893
RsaI GTAC 3 cut(s) 33, 134, 728
RsaNI GTAC 3 cut(s) 32, 133, 727
SacI GAGCTC 1 cut(s) 791
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 55, 446
Sau96I GGNCC 4 cut(s) 304, 321, 861, 893
SchI GAGTC 4 cut(s) 185, 300, 683, 804
ScrFI CCNGG 4 cut(s) 308, 488, 592, 675
SduI GDGCHC 3 cut(s) 282, 486, 791
SexAI ACCWGGT 1 cut(s) 486
SfcI CTRYAG 2 cut(s) 577, 897
SfoI GGCGCC 1 cut(s) 159
SinI GGWCC 3 cut(s) 304, 321, 893
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 1 cut(s) 476
SsiI CCGC 3 cut(s) 107, 296, 339
SspDI GGCGCC 1 cut(s) 157
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 791
StyD4I CCNGG 4 cut(s) 306, 486, 590, 673
StyI CCWWGG 2 cut(s) 698, 753
TaaI ACNGT 1 cut(s) 581
TaqI TCGA 3 cut(s) 179, 267, 798
TaqII GACCGA 1 cut(s) 868
TasI AATT 1 cut(s) 476
TatI WGTACW 2 cut(s) 132, 726
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 3 cut(s) 82, 635, 841
TseFI GTSAC 1 cut(s) 686
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 3 cut(s) 82, 635, 841
VneI GTGCAC 2 cut(s) 278, 482
VpaK11BI GGWCC 3 cut(s) 304, 321, 893
XceI RCATGY 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.