Rorug01G0402300

Cytochrome b-561 / ferric reductase transmembrane domain.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
50992276 .. 50994976
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0402300.1

Sequence Viewer

Length: 1353 bp
ATGACGAACCAGCAAAACAACGATGAAGCCGGAGTGGTCGCTCATCCTCTTCTCCATGACTTCAAAATCCTAGAAGGTCAAACTTCTTCATCATCCTCCATACAAGGCGCTTCATTTTCCGGCGCCGTTTTCAACATCTCAACCACCATGATCGGAGCCGGAATCATGTCTATCCCGGCCACCATGAAAGTGCTGGGAATAATTCCCGGGTTCATAGCTATCTTAGTAGTGGCTGTCTTGACAGAGGTCACGGTGGAGTTCATGCTAAGGTACACGAACTCCGGCAAGTCGGAAACCTACGCCGGCATGGTGGGGGAGTCGTTTGGACCGTTGGGTTCGATTGCTGTGCAAGTCTGTATCATCATAACCAACCTGGGTTGCCTCATCATTTATTTCATCATCATCGGGGATGTGCTATGTGGGAGTACTCAATCTGGAGGAACTTTGCATTTGGGAATGTTACAAGAATGGTTTGGCATCCATTGGTGGAATTCTCGAGCTTATGCGCTTCTTTTCATTGCAATATTTGTGATGCTTCCATTAGTCTTGTTACGCCGAGTAGATTCACTGAGGCACACTTCAGCAATATCCATTTTGTTAGCAGTGGTTTTTGTTGCCATATGCTCTGCAATGGCGATTTATGCTGTGTGCAAAGGGAAAGCTCACAAACTGAGACTATTTCCGGACTTTGCAATGGTCTCAATATTTGATATTTTCACCAGTATCCCAGTCGTTGTGACAAGTTTTGGATTCCATGTCAATGTTCATCCAATTAGAGCAGAGCTCGGTGAGCCTTCTGATATGAAGTTAGCTGGTCGGATTTCTCTGCTGATCTGCGTTGCCATTTACTTCTCGATTGGCTTCTTTGGCTACCTATTGTTCGGGGACTCAATAATGGCTGACATGCTAGTAAACTTTGATCAAAACTCTGCCTCCACATTCGGGCAGATGCTCAATGTTGTTGTTCGATCAAGCTATGCAATGCACCTCTTGCTTGTGTTCCCCGTTATGAACTTTTCATTAAGGGCCAACATAGATGAACTGCTCTTCCCAAACAAGCCTGTTTTGGCGGAAAGCAACTCAAGATTTCTAATCCTCACTTGTGTCTTGCTCTCATTTTCTTACTTTGTGGCAATAGCTATCCCAAACATATGGTACTTCTTTCAGTTTATGGGATCAACCACTGTGGTTTGCCTCTCATTTATATTCCCTGGTGCTCTCATTCTCAGGGATGGACATGGGATATCAACAACAAAGGACAAGATAATAGCAATATTGGTGATAGTTTTGGCTGTGGTGACGAGCTCAGTTGCAATCTCTAGCAATTTCTACACTTCAACTCAAAGCTCTTAA

Protein Analysis

450

Amino Acids

48.9

Weight (kDa)

6.54

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 37 - 416 6.2e-51 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 38 - 284 3.3e-10 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 1 cut(s) 1070
AclWI GGATC 1 cut(s) 1183
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 272, 427, 1157
AfiI CCNNNNNNNGG 1 cut(s) 942
AgsI TTSAA 3 cut(s) 64, 133, 1338
AjnI CCWGG 2 cut(s) 372, 1210
AloI GAACNNNNNNTCC 2 cut(s) 1032, 1064
AluBI AGCT 9 cut(s) 218, 500, 662, 784, 812, 975, 1139, 1305, 1347
AluI AGCT 9 cut(s) 218, 500, 662, 784, 812, 975, 1139, 1305, 1347
Alw21I GWGCWC 3 cut(s) 786, 1219, 1307
Alw26I GTCTC 2 cut(s) 667, 703
AlwI GGATC 1 cut(s) 1183
Ama87I CYCGRG 2 cut(s) 206, 495
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 2 cut(s) 177, 1026
ApoI RAATTY 1 cut(s) 490
AspLEI GCGC 3 cut(s) 110, 125, 508
AspS9I GGNCC 2 cut(s) 326, 1026
AsuC2I CCSGG 3 cut(s) 176, 207, 208
AsuHPI GGTGA 4 cut(s) 709, 800, 1291, 1309
AvaI CYCGRG 2 cut(s) 206, 495
AvaII GGWCC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 2 cut(s) 786, 1307
Bbv12I GWGCWC 3 cut(s) 786, 1219, 1307
BccI CCATC 1 cut(s) 1226
BceAI ACGGC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 2 cut(s) 374, 1212
BciVI GTATCC 1 cut(s) 734
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 3 cut(s) 176, 207, 208
BcoDI GTCTC 2 cut(s) 667, 703
BfaI CTAG 3 cut(s) 71, 908, 1320
BfoI RGCGCY 2 cut(s) 111, 126
BfuI GTATCC 1 cut(s) 734
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 5 cut(s) 176, 207, 208, 374, 1212
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 2 cut(s) 206, 495
BmgT120I GGNCC 2 cut(s) 326, 1026
BmiI GGNNCC 2 cut(s) 124, 157
BmrFI CCNGG 5 cut(s) 176, 207, 208, 374, 1212
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 3 cut(s) 486, 522, 939
BmuI ACTGGG 1 cut(s) 722
BoxI GACNNNNGTC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 768, 800
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 1066
BpuMI CCSGG 3 cut(s) 176, 207, 208
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 3 cut(s) 206, 373, 1210
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 917, 947
Bsc4I CCNNNNNNNGG 1 cut(s) 942
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 720, 728
Bse3DI GCAATG 4 cut(s) 516, 636, 699, 987
BseAI TCCGGA 1 cut(s) 682
BseBI CCWGG 2 cut(s) 374, 1212
BseDI CCNNGG 3 cut(s) 206, 373, 1210
BseGI GGATG 6 cut(s) 43, 92, 415, 477, 766, 1237
BseLI CCNNNNNNNGG 1 cut(s) 942
BseMI GCAATG 4 cut(s) 516, 636, 699, 987
BseMII CTCAG 4 cut(s) 560, 662, 1240, 1320
BseNI ACTGG 2 cut(s) 720, 728
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 179, 1028
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 3 cut(s) 786, 1219, 1307
BsiHKCI CYCGRG 2 cut(s) 206, 495
BsiSI CCGG 8 cut(s) 30, 120, 159, 176, 207, 282, 303, 683
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 1 cut(s) 942
BsmAI GTCTC 2 cut(s) 667, 703
BsmFI GGGAC 1 cut(s) 899
BsnI GGCC 2 cut(s) 179, 1028
Bso31I GGTCTC 1 cut(s) 703
BsoBI CYCGRG 2 cut(s) 206, 495
Bsp1286I GDGCHC 3 cut(s) 786, 1219, 1307
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 5 cut(s) 150, 831, 919, 968, 1175
BspACI CCGC 1 cut(s) 1070
BspANI GGCC 2 cut(s) 179, 1028
BspCNI CTCAG 4 cut(s) 561, 663, 1239, 1319
BspEI TCCGGA 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 124, 157
BspPI GGATC 1 cut(s) 1183
BspQI GCTCTTC 1 cut(s) 1052
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 703
BsrDI GCAATG 4 cut(s) 516, 636, 699, 987
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 720, 728
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 206, 373, 1210
BssMI GATC 5 cut(s) 150, 831, 919, 968, 1175
BssNI GRCGYC 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 374, 1212
Bst4CI ACNGT 3 cut(s) 253, 330, 1186
Bst6I CTCTTC 2 cut(s) 54, 1052
BstACI GRCGYC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 991
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 6 cut(s) 223, 266, 569, 671, 1226, 1306
BstF5I GGATG 6 cut(s) 43, 92, 415, 477, 766, 1237
BstH2I RGCGCY 2 cut(s) 111, 126
BstHHI GCGC 3 cut(s) 110, 125, 508
BstKTI GATC 5 cut(s) 153, 834, 922, 971, 1178
BstMAI GTCTC 2 cut(s) 667, 703
BstMBI GATC 5 cut(s) 150, 831, 919, 968, 1175
BstMWI GCNNNNNNNGC 4 cut(s) 641, 790, 867, 991
BstNI CCWGG 2 cut(s) 374, 1212
BstNSI RCATGY 1 cut(s) 907
BstPAI GACNNNNGTC 1 cut(s) 245
BstSCI CCNGG 5 cut(s) 174, 205, 206, 372, 1210
BstXI CCANNNNNNTGG 1 cut(s) 1152
BsuI GTATCC 1 cut(s) 734
BsuRI GGCC 2 cut(s) 179, 1028
BtsCI GGATG 6 cut(s) 43, 92, 415, 477, 766, 1237
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 566, 609, 1182
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 3 cut(s) 110, 125, 508
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 326, 1026
Cfr9I CCCGGG 1 cut(s) 206
Csp6I GTAC 3 cut(s) 271, 426, 1156
CspCI CAANNNNNGTGG 2 cut(s) 1167, 1202
CviAII CATG 9 cut(s) 56, 148, 166, 184, 262, 307, 755, 904, 1238
CviQI GTAC 3 cut(s) 271, 426, 1156
DdeI CTNAG 6 cut(s) 223, 266, 569, 671, 1226, 1306
DinI GGCGCC 1 cut(s) 124
DpnI GATC 5 cut(s) 152, 833, 921, 970, 1177
DpnII GATC 5 cut(s) 150, 831, 919, 968, 1175
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 54, 1052
EarI CTCTTC 2 cut(s) 54, 1052
EciI GGCGGA 1 cut(s) 1085
Ecl136II GAGCTC 2 cut(s) 784, 1305
Eco24I GRGCYC 2 cut(s) 786, 1307
Eco31I GGTCTC 1 cut(s) 703
Eco32I GATATC 1 cut(s) 1245
Eco47I GGWCC 1 cut(s) 326
Eco53kI GAGCTC 2 cut(s) 784, 1305
Eco57I CTGAAG 1 cut(s) 564
Eco88I CYCGRG 2 cut(s) 206, 495
EcoICRI GAGCTC 2 cut(s) 784, 1305
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 372, 1210
EcoRV GATATC 1 cut(s) 1245
EcoT38I GRGCYC 2 cut(s) 786, 1307
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
FaeI CATG 9 cut(s) 59, 151, 169, 187, 265, 310, 758, 907, 1241
FaqI GGGAC 1 cut(s) 899
FatI CATG 9 cut(s) 55, 147, 165, 183, 261, 306, 754, 903, 1237
FauNDI CATATG 2 cut(s) 620, 1151
FbaI TGATCA 1 cut(s) 919
FokI GGATG 6 cut(s) 30, 79, 422, 464, 753, 1244
FriOI GRGCYC 2 cut(s) 786, 1307
FspBI CTAG 3 cut(s) 71, 908, 1320
GlaI GCGC 3 cut(s) 109, 124, 507
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 456
HaeII RGCGCY 2 cut(s) 111, 126
HaeIII GGCC 2 cut(s) 179, 1028
HapII CCGG 8 cut(s) 30, 120, 159, 176, 207, 282, 303, 683
HhaI GCGC 3 cut(s) 110, 125, 508
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 9 cut(s) 59, 151, 169, 187, 265, 310, 758, 907, 1241
Hin6I GCGC 3 cut(s) 108, 123, 506
HinP1I GCGC 3 cut(s) 108, 123, 506
HinfI GANTC 5 cut(s) 162, 317, 563, 750, 887
HpaII CCGG 8 cut(s) 30, 120, 159, 176, 207, 282, 303, 683
HphI GGTGA 4 cut(s) 709, 800, 1291, 1309
Hpy166II GTNNAC 2 cut(s) 273, 913
Hpy188I TCNGA 4 cut(s) 155, 292, 799, 819
Hpy188III TCNNGA 6 cut(s) 238, 435, 495, 683, 853, 1083
Hpy8I GTNNAC 2 cut(s) 273, 913
HpyAV CCTTC 2 cut(s) 68, 804
HpyCH4III ACNGT 3 cut(s) 253, 330, 1186
HpyCH4V TGCA 9 cut(s) 349, 448, 521, 629, 651, 692, 980, 985, 1313
HpyF10VI GCNNNNNNNGC 4 cut(s) 641, 790, 867, 991
HpyF3I CTNAG 6 cut(s) 223, 266, 569, 671, 1226, 1306
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 9 cut(s) 59, 151, 169, 187, 265, 310, 758, 907, 1241
HspAI GCGC 3 cut(s) 108, 123, 506
KasI GGCGCC 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 682
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 5 cut(s) 150, 831, 919, 968, 1175
LguI GCTCTTC 1 cut(s) 1052
LmnI GCTCC 1 cut(s) 155
LweI GCATC 3 cut(s) 486, 522, 939
MaeI CTAG 3 cut(s) 71, 908, 1320
MaeIII GTNAC 5 cut(s) 247, 459, 549, 736, 1297
MalI GATC 5 cut(s) 152, 833, 921, 970, 1177
MboI GATC 5 cut(s) 150, 831, 919, 968, 1175
MboII GAAGA 3 cut(s) 41, 78, 1039
MhlI GDGCHC 3 cut(s) 786, 1219, 1307
MluCI AATT 4 cut(s) 201, 490, 771, 1324
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 2 cut(s) 326, 881
MmeI TCCRAC 2 cut(s) 270, 797
MroI TCCGGA 1 cut(s) 682
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 2 cut(s) 1022, 1351
MslI CAYNNNNRTG 2 cut(s) 188, 759
MspI CCGG 8 cut(s) 30, 120, 159, 176, 207, 282, 303, 683
MspR9I CCNGG 5 cut(s) 176, 207, 208, 374, 1212
MvaI CCWGG 2 cut(s) 374, 1212
MwoI GCNNNNNNNGC 4 cut(s) 641, 790, 867, 991
NaeI GCCGGC 1 cut(s) 304
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 3 cut(s) 176, 207, 208
NdeI CATATG 2 cut(s) 620, 1151
NdeII GATC 5 cut(s) 150, 831, 919, 968, 1175
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 9 cut(s) 59, 151, 169, 187, 265, 310, 758, 907, 1241
NlaIV GGNNCC 2 cut(s) 124, 157
NmeAIII GCCGAG 1 cut(s) 581
NmuCI GTSAC 3 cut(s) 247, 736, 1297
NspI RCATGY 1 cut(s) 907
PaeR7I CTCGAG 1 cut(s) 495
PciSI GCTCTTC 1 cut(s) 1052
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 3 cut(s) 162, 563, 750
PleI GAGTC 2 cut(s) 325, 881
PluTI GGCGCC 1 cut(s) 126
PpsI GAGTC 2 cut(s) 325, 881
PshAI GACNNNNGTC 1 cut(s) 245
Psp124BI GAGCTC 2 cut(s) 786, 1307
Psp6I CCWGG 2 cut(s) 372, 1210
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 372, 1210
PspN4I GGNNCC 2 cut(s) 124, 157
PspPI GGNCC 2 cut(s) 326, 1026
RsaI GTAC 3 cut(s) 272, 427, 1157
RsaNI GTAC 3 cut(s) 271, 426, 1156
RseI CAYNNNNRTG 2 cut(s) 188, 759
SacI GAGCTC 2 cut(s) 786, 1307
SapI GCTCTTC 1 cut(s) 1052
SaqAI TTAA 2 cut(s) 1022, 1351
Sau3AI GATC 5 cut(s) 150, 831, 919, 968, 1175
Sau96I GGNCC 2 cut(s) 326, 1026
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 2 cut(s) 326, 881
ScrFI CCNGG 5 cut(s) 176, 207, 208, 374, 1212
SduI GDGCHC 3 cut(s) 786, 1219, 1307
SfaNI GCATC 3 cut(s) 486, 522, 939
SfoI GGCGCC 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 495
SmaI CCCGGG 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 188, 759
SmlI CTYRAG 2 cut(s) 495, 1081
SmoI CTYRAG 2 cut(s) 495, 1081
Sse9I AATT 4 cut(s) 201, 490, 771, 1324
SsiI CCGC 1 cut(s) 1070
SspDI GGCGCC 1 cut(s) 122
SspI AATATT 3 cut(s) 525, 705, 1275
SspMI CTAG 3 cut(s) 71, 908, 1320
SstI GAGCTC 2 cut(s) 786, 1307
StyD4I CCNGG 5 cut(s) 174, 205, 206, 372, 1210
TaaI ACNGT 3 cut(s) 253, 330, 1186
TaqI TCGA 4 cut(s) 338, 496, 854, 967
TasI AATT 4 cut(s) 201, 490, 771, 1324
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 3 cut(s) 162, 563, 750
Tru1I TTAA 2 cut(s) 1022, 1351
Tru9I TTAA 2 cut(s) 1022, 1351
TscAI CASTG 3 cut(s) 573, 609, 1189
TseFI GTSAC 3 cut(s) 247, 736, 1297
Tsp45I GTSAC 3 cut(s) 247, 736, 1297
TspMI CCCGGG 1 cut(s) 206
TspRI CASTG 3 cut(s) 573, 609, 1189
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 907
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 495
XmaI CCCGGG 1 cut(s) 206
XspI CTAG 3 cut(s) 71, 908, 1320
ZrmI AGTACT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.