Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010600.1

Orthogroup ID

OG0007411

Physical Location & Seq

Genomic Coordinates Forward (+)

7089 .. 9310

Gene Structure 2222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010600.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgccggccttaggagtaccatcgactccattcacgtttgtagtgcacgcgctcggagtcgcggttttgatcctggttctggtttggtccatatacttcaggggcggtttcgcatgggaagccaccgacaagagcctcatcttcaacctccatccttttctcatggtattgggcttagttttccttggaggagaagccattatcagttatagataccttcctttgaggaaagatgtgaagaaattagtgcacctggttcttcatgctatcgcattagcactcggtataatcggcatttatactgcatttaagaaccacaatgagattggggttgccaatctctacagtctgcactcctggattggcattggggttatttgcctctatggtattcagtggatatatgggttcttggtattcttctacccaaaaggaagtgcagggctgagaaatgactcagttccatggcatgtgatttttgggcttctcgtttacattttggtcgtcggcaatgctaccttggggttcttggagaagctcacattccttgagagctcaggagtcgaaaagtttggaagtgaggcatttcttgtcaacttcactgctctggttacactcgtgtttggggcctttgtgatattctcggtcatttctcagggtcctgtagaagaagaccacagctacacagaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0016491 GO:0019904 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

231

Amino Acids

25.47

Weight (kDa)

6.43

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25570 AT4G25570
fragaria_vesca	FvH4_7g29440
malus_domestica	MD01G1200600.v1.1 MD07G1268400.v1.1
prunus_persica	Prupe.2G294100_v2.0.a1
pyrus_communis	pycom07g24600
rosa_chinensis	RchiOBHm_Chr1g0377221 RchiOBHm_Chr1g0377231
rosa_laevigata	RLG00000026533 RLG00000026534
rosa_multiflora	Rmu_sc0010600.1_g000002 Rmu_ssc0000155.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281360 Rroxscaffold_4G00281370
rosa_rugosa	Rorug01G0402300 Rorug01G0402400 Rorug01G0402500
rosa_samantha	Rh1AG419600 Rh1AG419700 Rh1BG378700 Rh1CG392700 Rh1DG409300
rosa_wichuraiana	Rw1G036810 Rw1G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 62
AciI	CCGC	2 cut(s)	62, 105
AclWI	GGATC	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	11, 79
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	3 cut(s)	72, 252, 356
AluBI	AGCT	3 cut(s)	538, 555, 681
AluI	AGCT	3 cut(s)	538, 555, 681
Alw21I	GWGCWC	3 cut(s)	48, 252, 557
Alw44I	GTGCAC	2 cut(s)	44, 248
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	6, 627
ApaLI	GTGCAC	2 cut(s)	44, 248
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	87, 627, 659
AvaII	GGWCC	2 cut(s)	87, 659
AxyI	CCTNAGG	1 cut(s)	10
BaeGI	GKGCMC	2 cut(s)	48, 252
BanII	GRGCYC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	3 cut(s)	48, 252, 557
BccI	CCATC	2 cut(s)	28, 159
BciT130I	CCWGG	3 cut(s)	74, 254, 358
BfmI	CTRYAG	2 cut(s)	343, 663
Bme1390I	CCNGG	3 cut(s)	74, 254, 358
Bme18I	GGWCC	2 cut(s)	87, 659
BmgT120I	GGNCC	3 cut(s)	87, 627, 659
BmiI	GGNNCC	2 cut(s)	628, 660
BmrFI	CCNGG	3 cut(s)	74, 254, 358
BpiI	GAAGAC	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	184, 464, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 79
Bse118I	RCCGGY	1 cut(s)	4
Bse21I	CCTNAGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	517
BseBI	CCWGG	3 cut(s)	74, 254, 358
BseDI	CCNNGG	3 cut(s)	184, 464, 519
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	11, 79
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	4 cut(s)	437, 471, 570, 668
BseRI	GAGGAG	1 cut(s)	204
BseSI	GKGCMC	2 cut(s)	48, 252
BsgI	GTGCAG	2 cut(s)	335, 459
Bsh1236I	CGCG	2 cut(s)	50, 62
BshFI	GGCC	2 cut(s)	8, 629
BsiHKAI	GWGCWC	3 cut(s)	48, 252, 557
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	11, 79
BsnI	GGCC	2 cut(s)	8, 629
Bsp1286I	GDGCHC	3 cut(s)	48, 252, 557
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	2 cut(s)	62, 105
BspANI	GGCC	2 cut(s)	8, 629
BspCNI	CTCAG	4 cut(s)	438, 470, 569, 667
BspFNI	CGCG	2 cut(s)	50, 62
BspLI	GGNNCC	2 cut(s)	628, 660
BspPI	GGATC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	184, 464, 519
BssMI	GATC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	3 cut(s)	184, 464, 519
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	3 cut(s)	74, 254, 358
Bst4CI	ACNGT	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	6, 48
BstDEI	CTNAG	6 cut(s)	10, 175, 446, 457, 556, 654
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	50, 62
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	3 cut(s)	74, 254, 358
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	3 cut(s)	72, 252, 356
BstSFI	CTRYAG	2 cut(s)	343, 663
BstSLI	GKGCMC	2 cut(s)	48, 252
BstUI	CGCG	2 cut(s)	50, 62
BstV2I	GAAGAC	1 cut(s)	678
Bsu36I	CCTNAGG	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	8, 629
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	401, 600
Cac8I	GCNNGC	2 cut(s)	6, 48
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	3 cut(s)	87, 627, 659
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	5 cut(s)	114, 163, 263, 465, 470
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	6 cut(s)	10, 175, 446, 457, 556, 654
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	555
Eco130I	CCWWGG	3 cut(s)	184, 464, 519
Eco24I	GRGCYC	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	87, 659
Eco53kI	GAGCTC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	82
Eco81I	CCTNAGG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	555
EcoO109I	RGGNCCY	2 cut(s)	627, 659
EcoRII	CCWGG	3 cut(s)	72, 252, 356
EcoT14I	CCWWGG	3 cut(s)	184, 464, 519
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	3 cut(s)	184, 464, 519
FaeI	CATG	5 cut(s)	117, 166, 266, 468, 473
FatI	CATG	5 cut(s)	113, 162, 262, 464, 469
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	557
GlaI	GCGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	8, 629
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	5 cut(s)	117, 166, 266, 468, 473
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	4 cut(s)	25, 57, 455, 561
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	4 cut(s)	46, 250, 493, 595
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	1 cut(s)	558
Hpy8I	GTNNAC	4 cut(s)	46, 250, 493, 595
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	46, 250, 305, 352, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	6 cut(s)	10, 175, 446, 457, 556, 654
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	117, 166, 266, 468, 473
HspAI	GCGC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	69
MabI	ACCWGGT	1 cut(s)	252
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	6 cut(s)	133, 250, 251, 412, 680, 683
MhlI	GDGCHC	3 cut(s)	48, 252, 557
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	4 cut(s)	19, 66, 449, 570
MnlI	CCTC	6 cut(s)	146, 158, 182, 219, 392, 574
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	309
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	74, 254, 358
MvaI	CCWGG	3 cut(s)	74, 254, 358
MvnI	CGCG	2 cut(s)	50, 62
MwoI	GCNNNNNNNGC	1 cut(s)	119
NaeI	GCCGGC	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	1 cut(s)	69
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	117, 166, 266, 468, 473
NlaIV	GGNNCC	2 cut(s)	628, 660
NspI	RCATGY	1 cut(s)	473
PdiI	GCCGGC	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	356
PleI	GAGTC	4 cut(s)	19, 65, 449, 569
PpsI	GAGTC	4 cut(s)	19, 65, 449, 569
PpuMI	RGGWCCY	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	3 cut(s)	72, 252, 356
PspGI	CCWGG	3 cut(s)	72, 252, 356
PspN4I	GGNNCC	2 cut(s)	628, 660
PspPI	GGNCC	3 cut(s)	87, 627, 659
PspPPI	RGGWCCY	1 cut(s)	659
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	3 cut(s)	87, 627, 659
SchI	GAGTC	4 cut(s)	19, 66, 449, 570
ScrFI	CCNGG	3 cut(s)	74, 254, 358
SduI	GDGCHC	3 cut(s)	48, 252, 557
SetI	ASST	8 cut(s)	38, 150, 219, 255, 521, 540, 557, 683
SexAI	ACCWGGT	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	343, 663
SinI	GGWCC	2 cut(s)	87, 659
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	2 cut(s)	62, 105
SstI	GAGCTC	1 cut(s)	557
StyD4I	CCNGG	3 cut(s)	72, 252, 356
StyI	CCWWGG	3 cut(s)	184, 464, 519
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	23, 564
TaqII	GACCGA	1 cut(s)	634
TasI	AATT	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	401, 607
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	401, 607
VneI	GTGCAC	2 cut(s)	44, 248
VpaK11BI	GGWCC	2 cut(s)	87, 659
XceI	RCATGY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.