AT4G32260

Belongs to the ATPase B chain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007596
Physical Location & Seq
Reverse (-)
15573553 .. 15574737
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32260.1

Sequence Viewer

Length: 660 bp
ATGGCTGCTAATTCGATAATGGCTTCCTCCAAACCCCTAATCTCCCTGTCATCCAACCAACAACCAAACCGAGTCCAAATTCCCAAATTCGCCAAACTTCCCCAAATTCCCAAATCCCTCACTTCCTCCACCGATCTCCGTAGCAAAGCACTATCACTCTCCTCCGCCACCGCCAAATCCTTAGCTTTAATCGCCGCTTTCGCTCCTCCGTCGATGGCGGAGGCGATGGAGAAAGCACAGCTCTTCGATTTCAATCTCACGCTTCCGATCATCGTTGTTGAGTTTCTCTTCTTGATGTTCGCTCTCGACAAGGTCTATTACTCTCCGCTTGGTAACTTCATGGATCAAAGAGACGCTTCCATCAAAGAGAAGCTCGCGAGTGTTAAGGACACTTCGACTGAAGTAAAGGAGCTCGATGAGCAAGCCGCCGCCGTGATGAGAGCAGCTAGGGCTGAGATCGCCGCCGCGCTTAACAAGATGAAGAAGGAGACTCAGGTTGAAGTCGAGGAGAAGCTAGCGGAGGGAAGGAAGAAGGTGGAGGAAGAGCTAAAAGAAGCTTTGGCGAGCTTGGAGAGTCAGAAAGAAGAAACCATTAAAGCTTTGGATTCTCAGATTGCTGCTCTTAGTGAAGACATTGTCAAGAAGGTTCTTCCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_B

Protein Analysis

219

Amino Acids

23.92

Weight (kDa)

5.8

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_B PF00430 88 - 217 5e-15 ATP synthase B/B' CF(0)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 377, 467
AclWI GGATC 1 cut(s) 351
AcsI RAATTY 3 cut(s) 78, 86, 105
AcuI CTGAAG 1 cut(s) 420
AgsI TTSAA 2 cut(s) 253, 500
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 345, 482
AlwI GGATC 1 cut(s) 351
ApeKI GCWGC 3 cut(s) 5, 443, 617
ApoI RAATTY 3 cut(s) 78, 86, 105
AspLEI GCGC 1 cut(s) 469
AsuNHI GCTAGC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 455, 604
BccI CCATC 3 cut(s) 208, 220, 368
BceAI ACGGC 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 345, 482
BfaI CTAG 2 cut(s) 447, 515
BisI GCNGC 8 cut(s) 6, 195, 426, 429, 444, 462, 465, 618
BlsI GCNGC 8 cut(s) 7, 196, 427, 430, 445, 463, 466, 619
BmtI GCTAGC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 252
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 252
BseMII CTCAG 3 cut(s) 444, 506, 623
BseRI GAGGAG 3 cut(s) 151, 195, 521
BseXI GCAGC 2 cut(s) 455, 604
Bsh1236I CGCG 2 cut(s) 377, 467
BsiHKAI GWGCWC 1 cut(s) 414
BsmAI GTCTC 2 cut(s) 345, 482
BsmBI CGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 4 cut(s) 133, 267, 343, 456
Bsp68I TCGCGA 1 cut(s) 377
BspCNI CTCAG 3 cut(s) 445, 505, 622
BspFNI CGCG 2 cut(s) 377, 467
BspOI GCTAGC 1 cut(s) 518
BspPI GGATC 1 cut(s) 351
BspQI GCTCTTC 2 cut(s) 248, 537
BssMI GATC 4 cut(s) 133, 267, 343, 456
Bst6I CTCTTC 3 cut(s) 248, 293, 537
BstC8I GCNNGC 4 cut(s) 375, 423, 516, 565
BstDEI CTNAG 5 cut(s) 181, 453, 492, 609, 623
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 2 cut(s) 377, 467
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 4 cut(s) 136, 270, 346, 459
BstMAI GTCTC 2 cut(s) 345, 482
BstMBI GATC 4 cut(s) 133, 267, 343, 456
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 418, 449, 458
BstUI CGCG 2 cut(s) 377, 467
BstV1I GCAGC 2 cut(s) 455, 604
BstV2I GAAGAC 1 cut(s) 636
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 50
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 4 cut(s) 375, 423, 516, 565
CfoI GCGC 1 cut(s) 469
CseI GACGC 1 cut(s) 362
CviAII CATG 1 cut(s) 340
DdeI CTNAG 5 cut(s) 181, 453, 492, 609, 623
DpnI GATC 4 cut(s) 135, 269, 345, 458
DpnII GATC 4 cut(s) 133, 267, 343, 456
Eam1104I CTCTTC 3 cut(s) 248, 293, 537
EarI CTCTTC 3 cut(s) 248, 293, 537
EciI GGCGGA 2 cut(s) 154, 233
Ecl136II GAGCTC 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 1 cut(s) 343
FaiI YATR 1 cut(s) 341
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FatI CATG 1 cut(s) 339
Fnu4HI GCNGC 8 cut(s) 6, 195, 426, 429, 444, 462, 465, 618
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 8 cut(s) 6, 195, 426, 429, 444, 462, 465, 618
FspBI CTAG 2 cut(s) 447, 515
GlaI GCGC 1 cut(s) 468
GluI GCNGC 8 cut(s) 6, 195, 426, 429, 444, 462, 465, 618
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 469
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 2 cut(s) 555, 597
HinfI GANTC 4 cut(s) 72, 490, 574, 605
Hpy188I TCNGA 3 cut(s) 267, 579, 612
Hpy188III TCNNGA 4 cut(s) 292, 305, 376, 640
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 4 cut(s) 478, 519, 526, 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 418, 449, 458
HpyF3I CTNAG 5 cut(s) 181, 453, 492, 609, 623
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 4 cut(s) 133, 267, 343, 456
LguI GCTCTTC 2 cut(s) 248, 537
LmnI GCTCC 2 cut(s) 208, 409
LpnPI CCDG 2 cut(s) 59, 479
Lsp1109I GCAGC 2 cut(s) 455, 604
MaeI CTAG 2 cut(s) 447, 515
MaeIII GTNAC 1 cut(s) 332
MalI GATC 4 cut(s) 135, 269, 345, 458
MboI GATC 4 cut(s) 133, 267, 343, 456
MboII GAAGA 8 cut(s) 235, 280, 493, 541, 554, 596, 641, 641
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 4 cut(s) 10, 78, 86, 105
MlyI GAGTC 3 cut(s) 81, 484, 583
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 9 cut(s) 37, 128, 136, 172, 214, 216, 499, 514, 532
MseI TTAA 5 cut(s) 188, 384, 471, 594, 658
MvnI CGCG 2 cut(s) 377, 467
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 418, 449, 458
NdeII GATC 4 cut(s) 133, 267, 343, 456
NheI GCTAGC 1 cut(s) 514
NlaIII CATG 1 cut(s) 343
NruI TCGCGA 1 cut(s) 377
PciSI GCTCTTC 2 cut(s) 248, 537
PfeI GAWTC 1 cut(s) 605
PflFI GACNNNGTC 2 cut(s) 311, 635
PkrI GCNGC 8 cut(s) 7, 196, 427, 430, 445, 463, 466, 619
PleI GAGTC 3 cut(s) 80, 484, 582
PpsI GAGTC 3 cut(s) 80, 484, 582
Psp124BI GAGCTC 1 cut(s) 414
PsyI GACNNNGTC 2 cut(s) 311, 635
RruI TCGCGA 1 cut(s) 377
SacI GAGCTC 1 cut(s) 414
SapI GCTCTTC 2 cut(s) 248, 537
SaqAI TTAA 5 cut(s) 188, 384, 471, 594, 658
SatI GCNGC 8 cut(s) 6, 195, 426, 429, 444, 462, 465, 618
Sau3AI GATC 4 cut(s) 133, 267, 343, 456
SchI GAGTC 3 cut(s) 81, 484, 583
SduI GDGCHC 1 cut(s) 414
Sse9I AATT 4 cut(s) 10, 78, 86, 105
SspMI CTAG 2 cut(s) 447, 515
SstI GAGCTC 1 cut(s) 414
TaqI TCGA 7 cut(s) 14, 212, 246, 306, 395, 414, 504
TasI AATT 4 cut(s) 10, 78, 86, 105
TauI GCSGC 5 cut(s) 197, 428, 431, 464, 467
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 5 cut(s) 188, 384, 471, 594, 658
Tru9I TTAA 5 cut(s) 188, 384, 471, 594, 658
TseI GCWGC 3 cut(s) 5, 443, 617
TspDTI ATGAA 2 cut(s) 328, 494
TspGWI ACGGA 2 cut(s) 128, 198
Tth111I GACNNNGTC 2 cut(s) 311, 635
XapI RAATTY 3 cut(s) 78, 86, 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XspI CTAG 2 cut(s) 447, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.