Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003162.1

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

18661 .. 19374

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003162.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgctgagaagcatctgttcctggtgcctccactgcccgcgttacggcatatacatctgcgctataatctccatcctcctcctcctcatctccgtctctcttctctacacccgcctcttccactcccaatcccaccacttcaactaccgccaccaaacccccatatcccaaaacgacgatgtttccctcttcaaccccctcatctccgacaacgccaccgctgccatcaccaccatccccattgacgacaagatcgataagctcgatgacaacgatcagcagtcggagaattctcaaggatcctctgggtttttcttcgataatgtcagtggggacgatgtgccggtggatatggaggtaaggaggaggatgactgaggtggtaggtgtggaggacgtgctaatggtgaaggtggggaagagggtatctctattcacggaatgggtggggggagttgccaccaccgccatgttcgccccaatttcacatattttcctcaaaacccagaacaagctactcccattcctcccccatgaatacacataccgatcacctgaaattaaggttggagtaggactgagacaaggcctttcagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00601 ko00603 ko01100 map00601 map00603 map01100

Pfam Domains

Protein Families

Gb3_synth Gly_transf_sug

Protein Analysis

199

Amino Acids

22.41

Weight (kDa)

5.94

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccII	CGCG	1 cut(s)	40
AciI	CCGC	5 cut(s)	38, 112, 148, 219, 465
AclWI	GGATC	2 cut(s)	294, 307
AcsI	RAATTY	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	142, 193
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	20
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	2 cut(s)	262, 514
AluI	AGCT	2 cut(s)	262, 514
Alw26I	GTCTC	2 cut(s)	100, 574
AlwI	GGATC	2 cut(s)	294, 307
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	220, 418, 543
BamHI	GGATCC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	3 cut(s)	80, 233, 242
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	100, 574
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	26, 301
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
BpuEI	CTTGAG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	255
BseGI	GGATG	3 cut(s)	72, 234, 375
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	366, 569
BseRI	GAGGAG	4 cut(s)	68, 71, 74, 379
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	588
BshNI	GGYRCC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	100, 574
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	252, 274, 299, 548
BspACI	CCGC	5 cut(s)	38, 112, 148, 219, 465
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	2 cut(s)	367, 570
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	26, 301
BspPI	GGATC	2 cut(s)	294, 307
BspT107I	GGYRCC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	343
BssMI	GATC	4 cut(s)	252, 274, 299, 548
Bst2UI	CCWGG	1 cut(s)	22
Bst6I	CTCTTC	4 cut(s)	105, 122, 194, 413
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	5, 375, 578
BstF5I	GGATG	3 cut(s)	72, 234, 375
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	4 cut(s)	255, 277, 302, 551
BstMAI	GTCTC	2 cut(s)	100, 574
BstMBI	GATC	4 cut(s)	252, 274, 299, 548
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 221, 464, 473
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	588
BsuTUI	ATCGAT	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	72, 234, 375
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	3 cut(s)	31, 334, 600
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	343
ClaI	ATCGAT	1 cut(s)	255
CviAII	CATG	2 cut(s)	469, 533
CviJI	RGCY	3 cut(s)	262, 514, 588
CviKI_1	RGCY	3 cut(s)	262, 514, 588
DdeI	CTNAG	3 cut(s)	5, 375, 578
DpnI	GATC	4 cut(s)	254, 276, 301, 550
DpnII	GATC	4 cut(s)	252, 274, 299, 548
Eam1104I	CTCTTC	4 cut(s)	105, 122, 194, 413
EarI	CTCTTC	4 cut(s)	105, 122, 194, 413
Eco147I	AGGCCT	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	2 cut(s)	472, 536
FaiI	YATR	9 cut(s)	50, 52, 65, 164, 353, 470, 489, 534, 544
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	468, 532
FauI	CCCGC	2 cut(s)	45, 119
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	3 cut(s)	59, 221, 382
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	472, 536
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	3 cut(s)	220, 418, 543
Hpy188I	TCNGA	2 cut(s)	208, 286
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 221, 464, 473
HpyF3I	CTNAG	3 cut(s)	5, 375, 578
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	472, 536
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	252, 274, 299, 548
LpnPI	CCDG	6 cut(s)	7, 34, 291, 357, 518, 567
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	254, 276, 301, 550
MboI	GATC	4 cut(s)	252, 274, 299, 548
MboII	GAAGA	5 cut(s)	92, 109, 181, 307, 430
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	3 cut(s)	289, 480, 558
MmeI	TCCRAC	3 cut(s)	231, 264, 547
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	4 cut(s)	33, 221, 464, 473
NdeII	GATC	4 cut(s)	252, 274, 299, 548
NlaIII	CATG	2 cut(s)	472, 536
NlaIV	GGNNCC	2 cut(s)	26, 301
PceI	AGGCCT	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 261, 270
PkrI	GCNGC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	26, 301
PsuI	RGATCY	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	4 cut(s)	252, 274, 299, 548
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	9 cut(s)	264, 360, 381, 388, 399, 414, 516, 556, 567
SfaNI	GCATC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	289, 480, 558
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	5 cut(s)	38, 112, 148, 219, 465
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	20
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	3 cut(s)	255, 264, 318
TasI	AATT	3 cut(s)	289, 480, 558
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	3 cut(s)	38, 334, 600
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	2 cut(s)	82, 452
TspRI	CASTG	3 cut(s)	38, 334, 600
XapI	RAATTY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.