Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002438.1

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

66391 .. 66684

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002438.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ctggatcgacccgtttcaccttgtctcgatgctttccacctcttccaatccctcaaatccctttccctagtcgccgccacctccctcaccctggccccgccgtccctcgccgctgagatcgagaaggcggcgctctttgactccgacttgaccctgccaatccaggtcgtccagttcctcctcctcatggtggccctcgacaagatctactactcaccgctaggtaaattcatggacgagcacgacgccgacatcagggagaagctgggagtatcactgttgctccggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

97

Amino Acids

10.72

Weight (kDa)

4.88

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	75, 98, 111, 128, 218
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	4 cut(s)	91, 187, 190, 255
AjnI	CCWGG	2 cut(s)	90, 162
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	93, 192
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	94, 193
AsuHPI	GGTGA	3 cut(s)	9, 79, 207
Bbv12I	GWGCWC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	92, 164
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	68, 221
BfoI	RGCGCY	1 cut(s)	134
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	3 cut(s)	75, 111, 129
BlsI	GCNGC	3 cut(s)	76, 112, 130
Bme1390I	CCNGG	2 cut(s)	92, 164
BmgT120I	GGNCC	2 cut(s)	94, 193
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	92, 164
BmsI	GCATC	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 187, 190, 255
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	92, 164
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	4 cut(s)	91, 187, 190, 255
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	2 cut(s)	170, 173
BseYI	CCCAGC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	95, 194
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	4 cut(s)	91, 187, 190, 255
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	95, 194
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	4, 117, 204
BspACI	CCGC	5 cut(s)	75, 98, 111, 128, 218
BspANI	GGCC	2 cut(s)	95, 194
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	4, 117, 204
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	92, 164
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	7, 120, 207
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	4, 117, 204
BstNI	CCWGG	2 cut(s)	92, 164
BstSCI	CCNGG	2 cut(s)	90, 162
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	95, 194
BtsIMutI	CAGTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	94, 193
CseI	GACGC	1 cut(s)	254
CviAII	CATG	2 cut(s)	187, 232
CviJI	RGCY	3 cut(s)	95, 194, 265
CviKI_1	RGCY	3 cut(s)	95, 194, 265
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	6, 119, 206
DpnII	GATC	3 cut(s)	4, 117, 204
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	90, 162
FaeI	CATG	2 cut(s)	190, 235
FaiI	YATR	2 cut(s)	188, 233
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	186, 231
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	75, 111, 129
Fsp4HI	GCNGC	3 cut(s)	75, 111, 129
FspBI	CTAG	2 cut(s)	68, 221
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	75, 111, 129
GsaI	CCCAGC	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	95, 194
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	190, 235
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	3 cut(s)	9, 79, 207
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	26, 121
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	279
HpyF3I	CTNAG	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	190, 235
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	3 cut(s)	4, 117, 204
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	8 cut(s)	77, 104, 149, 167, 176, 185, 241, 251
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	68, 221
MalI	GATC	3 cut(s)	6, 119, 206
MboI	GATC	3 cut(s)	4, 117, 204
MboII	GAAGA	1 cut(s)	34
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	9 cut(s)	50, 62, 91, 95, 116, 188, 191, 194, 206
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	2 cut(s)	92, 164
MvaI	CCWGG	2 cut(s)	92, 164
NdeII	GATC	3 cut(s)	4, 117, 204
NlaIII	CATG	2 cut(s)	190, 235
NlaIV	GGNNCC	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	76, 112, 130
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	90, 162
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	2 cut(s)	90, 162
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	94, 193
PsuI	RGATCY	1 cut(s)	204
SatI	GCNGC	3 cut(s)	75, 111, 129
Sau3AI	GATC	3 cut(s)	4, 117, 204
Sau96I	GGNCC	2 cut(s)	94, 193
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	92, 164
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	6 cut(s)	22, 42, 83, 168, 226, 267
SfaNI	GCATC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	5 cut(s)	75, 98, 111, 128, 218
SspMI	CTAG	2 cut(s)	68, 221
StyD4I	CCNGG	2 cut(s)	90, 162
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	7, 27, 120, 198
TasI	AATT	1 cut(s)	227
TauI	GCSGC	3 cut(s)	77, 113, 131
TscAI	CASTG	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	227
XspI	CTAG	2 cut(s)	68, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.