Rh4DG437300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007596
Physical Location & Seq
Reverse (-)
64042484 .. 64042921
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG437300.1

Sequence Viewer

Length: 327 bp
ATGGCCAACATGATAATGGCCTCCTCCAAAGTCCCAATCTCCTCCTCAGCCCCTTCCCCCATTTCCAAGCCCAAGCTCGCCGCGTCCAAATCTCCATCCCCAAGCTCACCCCCTCTAATCCCTCAAATCCCTCTCCCTAATCGCCGCCACCTCCCTCTCCGTCGCCCCGCTGTCCCTTGCCGCCGAGATCGAGAAGGCGGCGCTCTTCGACTTCGACCTGACCCTGCCTATCCAGACCGTCCGGTTCTTGTTCCTCATGGTGGCCCTCGACAAGATCTACTACTCGCCGCTCGACAAACTTTAAATTTCTTGTTTAAGACCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.8

Weight (kDa)

11.56

Isoelectric Point (pI)

86.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 1 cut(s) 83
AciI CCGC 6 cut(s) 81, 145, 168, 181, 198, 288
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 76, 105
AluI AGCT 2 cut(s) 76, 105
AoxI GGCC 3 cut(s) 3, 18, 262
ApoI RAATTY 1 cut(s) 304
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 99
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 103
BfoI RGCGCY 1 cut(s) 204
BglII AGATCT 1 cut(s) 274
BisI GCNGC 5 cut(s) 81, 145, 181, 199, 288
BlsI GCNGC 5 cut(s) 82, 146, 182, 200, 289
BmgT120I GGNCC 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 3 cut(s) 13, 31, 34
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 5, 20, 264
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 2 cut(s) 17, 158
BslI CCNNNNNNNGG 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 17, 158
BsnI GGCC 3 cut(s) 5, 20, 264
Bsp143I GATC 2 cut(s) 187, 274
BspACI CCGC 6 cut(s) 81, 145, 168, 181, 198, 288
BspANI GGCC 3 cut(s) 5, 20, 264
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 210
BsrBI CCGCTC 1 cut(s) 290
BssMI GATC 2 cut(s) 187, 274
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 190, 277
BstMBI GATC 2 cut(s) 187, 274
BstUI CGCG 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 3 cut(s) 5, 20, 264
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 72
CviAII CATG 2 cut(s) 10, 257
CviJI RGCY 7 cut(s) 5, 20, 50, 70, 76, 105, 264
CviKI_1 RGCY 7 cut(s) 5, 20, 50, 70, 76, 105, 264
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 189, 276
DpnII GATC 2 cut(s) 187, 274
DraI TTTAAA 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
FaeI CATG 2 cut(s) 13, 260
FaiI YATR 2 cut(s) 11, 258
FaqI GGGAC 2 cut(s) 17, 158
FatI CATG 2 cut(s) 9, 256
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 5 cut(s) 81, 145, 181, 199, 288
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 5 cut(s) 81, 145, 181, 199, 288
GlaI GCGC 1 cut(s) 202
GluI GCNGC 5 cut(s) 81, 145, 181, 199, 288
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 3 cut(s) 5, 20, 264
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 13, 260
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 191, 233
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 63, 188
HpyCH4III ACNGT 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 2 cut(s) 13, 260
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 187, 274
LguI GCTCTTC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 231, 237, 246, 255
MalI GATC 2 cut(s) 189, 276
MbiI CCGCTC 1 cut(s) 290
MboI GATC 2 cut(s) 187, 274
MboII GAAGA 1 cut(s) 197
MflI RGATCY 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 304
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 302, 315
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 83
NdeII GATC 2 cut(s) 187, 274
NlaIII CATG 2 cut(s) 13, 260
NmeAIII GCCGAG 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 210
PkrI GCNGC 5 cut(s) 82, 146, 182, 200, 289
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 302, 315
SatI GCNGC 5 cut(s) 81, 145, 181, 199, 288
Sau3AI GATC 2 cut(s) 187, 274
Sau96I GGNCC 1 cut(s) 263
SetI ASST 5 cut(s) 78, 107, 153, 220, 323
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 1 cut(s) 304
SsiI CCGC 6 cut(s) 81, 145, 168, 181, 198, 288
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 5 cut(s) 190, 208, 214, 268, 292
TasI AATT 1 cut(s) 304
TauI GCSGC 5 cut(s) 83, 147, 183, 201, 290
Tru1I TTAA 2 cut(s) 302, 315
Tru9I TTAA 2 cut(s) 302, 315
TspGWI ACGGA 1 cut(s) 149
XapI RAATTY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.