Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Forward (+)

40223476 .. 40224441

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G482000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCAACATGATCATGGCCTCCTCCAAAGTACCCATTTCTTCCCCTTCCCCGTCTCCCATTTCGAAGCCCAGAATCCCAATCCAAATCTCCATCCCCAAACTCCCAACCCTCCCAAAACTCTCCAAGTCCCAAATCCTCTCCCTCTCGTCGTCCCTCTCCGTTATCGCAGCCACCTCCCTCTCATGGGCCCCGCCCTCCTTGGCGGAGGAGATAGAGAAGGCAGCCCTCTTCGACTTCGACCTCACCCTCCCCATTCAAATGGTGCAGTTCCTGCTTCTCATGGTGGCCCTGGACAAGCTCTACTACAGCCCGCTCGGGAAATTCATGGACGAGAGAGACGCGGCGATCAGAGAGAAGCTGGGCAGCGTGAAGGACACTTCGGAGGAGGTGAAGCAGCTTGAGCAGCAAGGCATCGCCATCATGAGAGCTGCGAGGGCTGAGATATCGGCGGCGCTGACCAAGATGAAGAAGGAGACGCAGGGGGAGGTAGAGCAGAAATTGACGGAGGGGAGGAAGAAGGTGGAGGCTGAGTTGCAGGAGGCTTTGAACAAGTTGGAGGAGCAGAAGGAGGAGACCATTAAGGCCCTTGACTCTCAGATTGCCAATCTCAGTGACCAGATTGTCAAGAAGGTCCTTCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

216

Amino Acids

23.67

Weight (kDa)

6.45

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	623
AccBSI	CCGCTC	1 cut(s)	316
AccII	CGCG	1 cut(s)	344
AciI	CCGC	5 cut(s)	194, 206, 314, 344, 452
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	186, 187
AgsI	TTSAA	2 cut(s)	260, 550
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	4 cut(s)	301, 361, 400, 431
AluI	AGCT	4 cut(s)	301, 361, 400, 431
Alw26I	GTCTC	4 cut(s)	60, 333, 470, 569
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	5 cut(s)	3, 18, 189, 288, 585
ApaI	GGGCCC	1 cut(s)	193
ApeKI	GCWGC	6 cut(s)	170, 224, 366, 397, 406, 431
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	5 cut(s)	189, 190, 289, 586, 634
AsuHPI	GGTGA	2 cut(s)	238, 403
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	193
BbvI	GCAGC	6 cut(s)	182, 236, 378, 409, 418, 418
BccI	CCATC	2 cut(s)	101, 428
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	4 cut(s)	60, 333, 470, 569
BfmI	CTRYAG	1 cut(s)	307
BfoI	RGCGCY	1 cut(s)	458
BisI	GCNGC	8 cut(s)	171, 225, 345, 367, 398, 407, 432, 453
BlsI	GCNGC	8 cut(s)	172, 226, 346, 368, 399, 408, 433, 454
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	5 cut(s)	189, 190, 289, 586, 634
BmiI	GGNNCC	2 cut(s)	191, 192
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	201, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 187
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	201, 291
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	186, 187
BseMII	CTCAG	4 cut(s)	432, 522, 611, 625
BseRI	GAGGAG	5 cut(s)	13, 224, 401, 575, 587
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	6 cut(s)	182, 236, 378, 409, 418, 418
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	5 cut(s)	5, 20, 191, 290, 587
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	115, 139
BslI	CCNNNNNNNGG	2 cut(s)	186, 187
BsmAI	GTCTC	4 cut(s)	60, 333, 470, 569
BsmBI	CGTCTC	3 cut(s)	60, 333, 470
BsmFI	GGGAC	2 cut(s)	115, 139
BsnI	GGCC	5 cut(s)	5, 20, 191, 290, 587
Bso31I	GGTCTC	1 cut(s)	569
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	65
Bsp120I	GGGCCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	12, 348
BspACI	CCGC	5 cut(s)	194, 206, 314, 344, 452
BspANI	GGCC	5 cut(s)	5, 20, 191, 290, 587
BspCNI	CTCAG	4 cut(s)	433, 523, 610, 624
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	191, 192
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	201, 291
BssMI	GATC	2 cut(s)	12, 348
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	4 cut(s)	441, 531, 597, 611
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	15, 351
BstMAI	GTCTC	4 cut(s)	60, 333, 470, 569
BstMBI	GATC	2 cut(s)	12, 348
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 403, 406, 437
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	6 cut(s)	182, 236, 378, 409, 418, 418
BstXI	CCANNNNNNTGG	1 cut(s)	262
BsuRI	GGCC	5 cut(s)	5, 20, 191, 290, 587
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	5 cut(s)	189, 190, 289, 586, 634
CseI	GACGC	2 cut(s)	350, 487
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	6 cut(s)	10, 16, 186, 283, 328, 424
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	4 cut(s)	441, 531, 597, 611
DpnI	GATC	2 cut(s)	14, 350
DpnII	GATC	2 cut(s)	12, 348
DrdI	GACNNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	569
Eco32I	GATATC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	3 cut(s)	190, 586, 634
EcoRII	CCWGG	1 cut(s)	291
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	3 cut(s)	60, 333, 470
FaeI	CATG	6 cut(s)	13, 19, 189, 286, 331, 427
FaiI	YATR	6 cut(s)	11, 17, 187, 284, 329, 425
FaqI	GGGAC	2 cut(s)	115, 139
FatI	CATG	6 cut(s)	9, 15, 185, 282, 327, 423
FauI	CCCGC	2 cut(s)	201, 321
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	8 cut(s)	171, 225, 345, 367, 398, 407, 432, 453
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	8 cut(s)	171, 225, 345, 367, 398, 407, 432, 453
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	8 cut(s)	171, 225, 345, 367, 398, 407, 432, 453
GsaI	CCCAGC	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	5 cut(s)	5, 20, 191, 290, 587
HgaI	GACGC	2 cut(s)	350, 487
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	6 cut(s)	13, 19, 189, 286, 331, 427
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HinfI	GANTC	2 cut(s)	75, 593
HphI	GGTGA	2 cut(s)	238, 403
Hpy188I	TCNGA	4 cut(s)	353, 385, 600, 647
Hpy188III	TCNNGA	3 cut(s)	319, 424, 628
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	8 cut(s)	57, 214, 367, 466, 514, 562, 625, 647
HpyCH4V	TGCA	2 cut(s)	268, 538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 403, 406, 437
HpyF3I	CTNAG	4 cut(s)	441, 531, 597, 611
Hsp92II	CATG	6 cut(s)	13, 19, 189, 286, 331, 427
HspAI	GCGC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 348
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	8 cut(s)	85, 278, 287, 305, 347, 467, 524, 632
Lsp1109I	GCAGC	6 cut(s)	182, 236, 378, 409, 418, 418
LweI	GCATC	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	2 cut(s)	14, 350
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	2 cut(s)	12, 348
MboII	GAAGA	4 cut(s)	33, 223, 481, 529
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	323, 500
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	537
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	2 cut(s)	14, 260
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	274, 403, 406, 437
NdeII	GATC	2 cut(s)	12, 348
NlaIII	CATG	6 cut(s)	13, 19, 189, 286, 331, 427
NlaIV	GGNNCC	2 cut(s)	191, 192
NmuCI	GTSAC	1 cut(s)	614
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	8 cut(s)	172, 226, 346, 368, 399, 408, 433, 454
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
PpuMI	RGGWCCY	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	191, 192
PspOMI	GGGCCC	1 cut(s)	189
PspPI	GGNCC	5 cut(s)	189, 190, 289, 586, 634
PspPPI	RGGWCCY	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	2 cut(s)	14, 260
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	8 cut(s)	171, 225, 345, 367, 398, 407, 432, 453
Sau3AI	GATC	2 cut(s)	12, 348
Sau96I	GGNCC	5 cut(s)	189, 190, 289, 586, 634
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	2 cut(s)	14, 260
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	2 cut(s)	323, 500
SsiI	CCGC	5 cut(s)	194, 206, 314, 344, 452
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	3 cut(s)	65, 234, 240
TasI	AATT	2 cut(s)	323, 500
TauI	GCSGC	2 cut(s)	347, 455
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	6 cut(s)	170, 224, 366, 397, 406, 431
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	2 cut(s)	316, 482
TspGWI	ACGGA	2 cut(s)	151, 521
TspRI	CASTG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.