Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003108.1

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

22591 .. 26132

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003108.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggcgaccgatggtagcgtcgactttgctgcattgtcgttgtgttgctgtcaaatgggtacttcatttgccctgacttttggaattgatagcttggaagcgattgcggtgggagcgatgactggcagtgagattggatccgagaccaatcctattctgctgcatgtggcggcggcagggcggtatcgagggagatgtcttccaacgtctccggagtttttttccaactccagttggatttggactattgcactgggctacggtgatgtcttcgatgtgtggtggagtcgtgacagcatggttgcggcggcagtctttctccatattcgaatccgtcatttggatctctctccagttcggatcctggatcaacccgtttttccttgtctggatgatttccacctcttccaatccctcaaattcctctccctagtcaccgccacctccctcacactggccccgccgtccctcatcgccgagatcgagaaggtgacgctctttaacttcaacctaaccttgccgattcagggcatccagttcctccacctcatggtggccctcaacaagatctactactcgtcgctgagtaagttcatggacgagcacgacgccaacattaaggagaagctgggagtatcactgttgctccgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

218

Amino Acids

24.1

Weight (kDa)

5.41

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	8 cut(s)	107, 170, 173, 181, 305, 308, 438, 461
AclWI	GGATC	6 cut(s)	132, 145, 351, 355, 368, 375
AcsI	RAATTY	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	5 cut(s)	340, 454, 527, 550, 553
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	93, 628
AluI	AGCT	2 cut(s)	93, 628
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	2 cut(s)	137, 213
AlwI	GGATC	6 cut(s)	132, 145, 351, 355, 368, 375
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	2 cut(s)	456, 555
ApeKI	GCWGC	2 cut(s)	29, 160
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	457, 556
AsuHPI	GGTGA	3 cut(s)	275, 427, 502
AsuII	TTCGAA	1 cut(s)	328
BamHI	GGATCC	2 cut(s)	137, 360
BbsI	GAAGAC	2 cut(s)	191, 262
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	16, 147
BccI	CCATC	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	448
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	137, 213
BfaI	CTAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	567
BisI	GCNGC	6 cut(s)	30, 161, 171, 174, 306, 309
BlsI	GCNGC	6 cut(s)	31, 162, 172, 175, 307, 310
Bme1390I	CCNGG	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	457, 556
BmiI	GGNNCC	3 cut(s)	139, 362, 459
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	191, 262
BpmI	CTGGAG	2 cut(s)	214, 336
Bpu14I	TTCGAA	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	1 cut(s)	630
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 454, 527, 550, 553
Bse1I	ACTGG	6 cut(s)	127, 231, 258, 353, 459, 535
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	397, 531
BseLI	CCNNNNNNNGG	5 cut(s)	340, 454, 527, 550, 553
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	6 cut(s)	127, 231, 258, 353, 459, 535
BseXI	GCAGC	2 cut(s)	16, 147
BseYI	CCCAGC	1 cut(s)	628
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	458, 557
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	5 cut(s)	340, 454, 527, 550, 553
BsmAI	GTCTC	2 cut(s)	137, 213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	458, 557
Bso31I	GGTCTC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
BspACI	CCGC	8 cut(s)	107, 170, 173, 181, 305, 308, 438, 461
BspANI	GGCC	2 cut(s)	458, 557
BspCNI	CTCAG	1 cut(s)	576
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	139, 362, 459
BspPI	GGATC	6 cut(s)	132, 145, 351, 355, 368, 375
BspT104I	TTCGAA	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	6 cut(s)	127, 231, 258, 353, 459, 535
BssMI	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
BssNI	GRCGYC	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	263, 642
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	609
BstBI	TTCGAA	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	397, 531
BstKTI	GATC	6 cut(s)	140, 346, 363, 370, 483, 570
BstMAI	GTCTC	2 cut(s)	137, 213
BstMBI	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	16, 147
BstV2I	GAAGAC	2 cut(s)	191, 262
BstX2I	RGATCY	4 cut(s)	137, 343, 360, 567
BstYI	RGATCY	4 cut(s)	137, 343, 360, 567
BsuRI	GGCC	2 cut(s)	458, 557
BtgZI	GCGATG	2 cut(s)	131, 457
BtsCI	GGATG	2 cut(s)	397, 531
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	4 cut(s)	133, 251, 452, 638
Cfr13I	GGNCC	2 cut(s)	457, 556
CseI	GACGC	3 cut(s)	7, 502, 617
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	4 cut(s)	164, 298, 550, 595
CviJI	RGCY	5 cut(s)	93, 258, 458, 557, 628
CviKI_1	RGCY	5 cut(s)	93, 258, 458, 557, 628
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	6 cut(s)	139, 345, 362, 369, 482, 569
DpnII	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	4 cut(s)	167, 301, 553, 598
FaiI	YATR	5 cut(s)	165, 299, 324, 551, 596
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	4 cut(s)	163, 297, 549, 594
FauI	CCCGC	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	6 cut(s)	30, 161, 171, 174, 306, 309
FokI	GGATG	2 cut(s)	404, 518
Fsp4HI	GCNGC	6 cut(s)	30, 161, 171, 174, 306, 309
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	6 cut(s)	30, 161, 171, 174, 306, 309
GsaI	CCCAGC	1 cut(s)	632
GsuI	CTGGAG	2 cut(s)	214, 336
HaeIII	GGCC	2 cut(s)	458, 557
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	3 cut(s)	7, 502, 617
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	4 cut(s)	167, 301, 553, 598
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	286, 330, 523
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	3 cut(s)	275, 427, 502
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	142, 360, 650
Hpy188III	TCNNGA	4 cut(s)	212, 290, 389, 484
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	3 cut(s)	23, 583, 611
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	2 cut(s)	263, 642
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	32, 163, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	167, 301, 553, 598
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
LmnI	GCTCC	2 cut(s)	113, 651
Lsp1109I	GCAGC	2 cut(s)	16, 147
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	3 cut(s)	290, 433, 490
MalI	GATC	6 cut(s)	139, 345, 362, 369, 482, 569
MboI	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
MboII	GAAGA	3 cut(s)	191, 262, 397
MflI	RGATCY	4 cut(s)	137, 343, 360, 567
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	2 cut(s)	84, 419
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	3 cut(s)	215, 227, 249
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	2 cut(s)	501, 618
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
NlaIII	CATG	4 cut(s)	167, 301, 553, 598
NlaIV	GGNNCC	3 cut(s)	139, 362, 459
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	3 cut(s)	290, 433, 490
NspI	RCATGY	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	330, 523
PflMI	CCANNNNNTGG	1 cut(s)	550
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	6 cut(s)	31, 162, 172, 175, 307, 310
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	139, 362, 459
PspPI	GGNCC	2 cut(s)	457, 556
PsuI	RGATCY	4 cut(s)	137, 343, 360, 567
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	501, 618
SatI	GCNGC	6 cut(s)	30, 161, 171, 174, 306, 309
Sau3AI	GATC	6 cut(s)	137, 343, 360, 367, 480, 567
Sau96I	GGNCC	2 cut(s)	457, 556
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	606
SetI	ASST	9 cut(s)	95, 209, 405, 446, 492, 513, 518, 549, 630
SfaNI	GCATC	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	328
Sse9I	AATT	2 cut(s)	84, 419
SsiI	CCGC	8 cut(s)	107, 170, 173, 181, 305, 308, 438, 461
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	263, 642
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	5 cut(s)	21, 187, 273, 328, 483
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	84, 419
TauI	GCSGC	4 cut(s)	173, 176, 308, 311
TfiI	GAWTC	2 cut(s)	330, 523
Tru1I	TTAA	2 cut(s)	501, 618
Tru9I	TTAA	2 cut(s)	501, 618
TscAI	CASTG	4 cut(s)	133, 258, 459, 645
TseFI	GTSAC	3 cut(s)	290, 433, 490
TseI	GCWGC	2 cut(s)	29, 160
Tsp45I	GTSAC	3 cut(s)	290, 433, 490
TspDTI	ATGAA	2 cut(s)	54, 583
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	4 cut(s)	133, 258, 459, 645
Van91I	CCANNNNNTGG	1 cut(s)	550
XapI	RAATTY	1 cut(s)	419
XceI	RCATGY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.