Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

53987371 .. 53987661

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGATGGCCCTCAACAAGATATACTACTCGCCGCTAGGTAAGTTCATGGACGAGGGCGACGCCAACATCAGGGAGAAGCTAGGGAGCATGAAGGACACGTCGGTGGAGGTGAAGCAGCTGGAGGAGCAGGGTGTGGCGATCATGAGGGCGGCGAGGGTAAAGATATCAGTGGCGCTCTCGAAGATGAAGAAGGAGACACAGGTGGAGGTGGAGGTGGAGGTGAAGCTAGCGAAGGGGAGGAAGAAGGTGGAGGCGGAGTTGCAGGAGGCCTTGGGGAAATTGAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

96

Amino Acids

10.77

Weight (kDa)

9.13

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	32, 149, 254
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	99
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	79, 118, 226
AluI	AGCT	3 cut(s)	79, 118, 226
Alw26I	GTCTC	1 cut(s)	188
AoxI	GGCC	2 cut(s)	6, 267
ApeKI	GCWGC	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	121, 232
AsuNHI	GCTAGC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	3 cut(s)	35, 80, 227
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	3 cut(s)	32, 116, 150
BlsI	GCNGC	3 cut(s)	33, 117, 151
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	7
BmtI	GCTAGC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	8, 269
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	8, 269
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	3 cut(s)	32, 149, 254
BspANI	GGCC	2 cut(s)	8, 269
BspHI	TCATGA	1 cut(s)	141
BspOI	GCTAGC	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	8, 269
BtrI	CACGTC	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	68
CviAII	CATG	3 cut(s)	46, 88, 142
CviJI	RGCY	5 cut(s)	8, 79, 118, 226, 269
CviKI_1	RGCY	5 cut(s)	8, 79, 118, 226, 269
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	269
Eco32I	GATATC	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	3 cut(s)	49, 91, 145
FaiI	YATR	4 cut(s)	22, 47, 89, 143
FatI	CATG	3 cut(s)	45, 87, 141
Fnu4HI	GCNGC	3 cut(s)	32, 116, 150
Fsp4HI	GCNGC	3 cut(s)	32, 116, 150
FspBI	CTAG	3 cut(s)	35, 80, 227
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	32, 116, 150
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	8, 269
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	49, 91, 145
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HphI	GGTGA	2 cut(s)	121, 232
Hpy188III	TCNNGA	2 cut(s)	142, 178
Hpy99I	CGWCG	2 cut(s)	62, 103
HpyAV	CCTTC	5 cut(s)	85, 184, 226, 238, 277
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	49, 91, 145
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	84, 124
LpnPI	CCDG	5 cut(s)	55, 104, 113, 185, 248
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	3 cut(s)	35, 80, 227
MaeII	ACGT	1 cut(s)	98
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	3 cut(s)	193, 199, 253
MluCI	AATT	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	138
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	49, 91, 145
OliI	CACNNNNGTG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	141
PceI	AGGCCT	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	33, 117, 151
PspPI	GGNCC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	101
SatI	GCNGC	3 cut(s)	32, 116, 150
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	278
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	3 cut(s)	32, 149, 254
SspMI	CTAG	3 cut(s)	35, 80, 227
StuI	AGGCCT	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	278
TauI	GCSGC	2 cut(s)	34, 152
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	34, 104, 200
TspRI	CASTG	1 cut(s)	174
XspI	CTAG	3 cut(s)	35, 80, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.