Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Forward (+)

9168254 .. 9169872

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1126100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCAACATGATCATGGCTTCCTCCAAAGTCCCCATCTCCTCCTCCCCTTCTACCCCAAACCCAAAACCCAGAATCCCACTCCAAATCTCCATCCCCAAAATGCCAGCAAACCTCCCAAAGCTCACAAAGCCCCAATTGGTATCCCTATCCTCCTCCCTCTCCGCCATCGCCGCCGCCTCGCTCGCATTGGCGCCACCTTCCCTGGCGGAGGAATTCGAGAAGGCGGCCCTGTTCGACTTCGACCTGACCCTCCCCATCCAGATGGTGCAGTTCCTGCTGCTTATGGTGGCGCTGGACAAGCTCTACTACAGCCCACTGGGGAACTTCATGGACGAGAGGGACGCGGCCATCAGGGAGAAGCTGGGGAGCGTGAAGGACACGTCGGAGGAGGTGAAGCAGCTTGAGGAGCAAGGCATCGCCATCATGAGGGCGGCGAGGGCGGAGATATCGGCGGCGCTGACGAAGATGAAGAAGGAGACGCAGGGGGAGGTGGAGCAGAAGTTGGCGGAGGGGAGGAAAAAGGTGGAGGCGGAGCTGCAGGAGGCGTTGGCGAAGTTGGAGGAGCAGAAGGAGGAGACCATGAAGGCGCTTGACTCACAGATTGCCAATCTCAGTGACCAGATTGTAAAGAAGGTCCTTCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

217

Amino Acids

23.62

Weight (kDa)

5.49

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_B	PF00430	84 - 214	3.4e-14	ATP synthase B/B' CF(0)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	1 cut(s)	347
AcoI	YGGCCR	2 cut(s)	3, 348
AcsI	RAATTY	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	211, 429
AflIII	ACRYGT	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	5 cut(s)	124, 304, 364, 403, 538
AluI	AGCT	5 cut(s)	124, 304, 364, 403, 538
Alw26I	GTCTC	2 cut(s)	473, 572
AlwNI	CAGNNNCTG	1 cut(s)	277
AoxI	GGCC	3 cut(s)	3, 228, 348
ApeKI	GCWGC	3 cut(s)	280, 400, 538
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	4 cut(s)	196, 295, 460, 592
AspS9I	GGNCC	2 cut(s)	229, 637
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	267, 412, 525
BccI	CCATC	7 cut(s)	44, 101, 176, 259, 266, 359, 431
BciT130I	CCWGG	1 cut(s)	206
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	473, 572
BfmI	CTRYAG	2 cut(s)	310, 539
BfoI	RGCGCY	4 cut(s)	197, 296, 461, 593
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	9 cut(s)	174, 177, 228, 281, 348, 401, 435, 456, 539
BlsI	GCNGC	9 cut(s)	175, 178, 229, 282, 349, 402, 436, 457, 540
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	637
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	229, 637
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 429
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	93, 258
BseLI	CCNNNNNNNGG	2 cut(s)	211, 429
BseMII	CTCAG	1 cut(s)	628
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	7 cut(s)	31, 34, 145, 404, 422, 578, 590
BseXI	GCAGC	3 cut(s)	267, 412, 525
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	3 cut(s)	5, 230, 350
BshNI	GGYRCC	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	17, 356
BslI	CCNNNNNNNGG	2 cut(s)	211, 429
BsmAI	GTCTC	2 cut(s)	473, 572
BsmBI	CGTCTC	1 cut(s)	473
BsmFI	GGGAC	2 cut(s)	17, 356
BsnI	GGCC	3 cut(s)	5, 230, 350
Bso31I	GGTCTC	1 cut(s)	572
Bsp143I	GATC	1 cut(s)	12
BspANI	GGCC	3 cut(s)	5, 230, 350
BspCNI	CTCAG	1 cut(s)	627
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	108, 186
BstDEI	CTNAG	1 cut(s)	614
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	93, 258
BstFNI	CGCG	1 cut(s)	347
BstH2I	RGCGCY	4 cut(s)	197, 296, 461, 593
BstHHI	GCGC	4 cut(s)	196, 295, 460, 592
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	2 cut(s)	473, 572
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 173, 185, 277, 301, 409, 440
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	2 cut(s)	310, 539
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	267, 412, 525
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	5, 230, 350
BtgZI	GCGATG	2 cut(s)	154, 403
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	93, 258
BtsIMutI	CAGTG	2 cut(s)	317, 622
Cac8I	GCNNGC	2 cut(s)	108, 186
CaiI	CAGNNNCTG	1 cut(s)	277
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	4 cut(s)	196, 295, 460, 592
Cfr13I	GGNCC	2 cut(s)	229, 637
CseI	GACGC	2 cut(s)	353, 490
CviAII	CATG	5 cut(s)	10, 16, 331, 427, 583
DdeI	CTNAG	1 cut(s)	614
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	2 cut(s)	3, 348
EciI	GGCGGA	5 cut(s)	154, 224, 458, 524, 548
Eco31I	GGTCTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	637
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	450
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	5 cut(s)	13, 19, 334, 430, 586
FaiI	YATR	6 cut(s)	11, 17, 287, 332, 428, 584
FaqI	GGGAC	2 cut(s)	17, 356
FatI	CATG	5 cut(s)	9, 15, 330, 426, 582
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	9 cut(s)	174, 177, 228, 281, 348, 401, 435, 456, 539
FokI	GGATG	2 cut(s)	80, 245
Fsp4HI	GCNGC	9 cut(s)	174, 177, 228, 281, 348, 401, 435, 456, 539
GlaI	GCGC	4 cut(s)	195, 294, 459, 591
GluI	GCNGC	9 cut(s)	174, 177, 228, 281, 348, 401, 435, 456, 539
GsaI	CCCAGC	1 cut(s)	368
HaeII	RGCGCY	4 cut(s)	197, 296, 461, 593
HaeIII	GGCC	3 cut(s)	5, 230, 350
HgaI	GACGC	2 cut(s)	353, 490
HhaI	GCGC	4 cut(s)	196, 295, 460, 592
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	13, 19, 334, 430, 586
Hin6I	GCGC	4 cut(s)	194, 293, 458, 590
HinP1I	GCGC	4 cut(s)	194, 293, 458, 590
HinfI	GANTC	2 cut(s)	75, 596
HphI	GGTGA	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	388, 650
Hpy188III	TCNNGA	3 cut(s)	220, 262, 427
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	9 cut(s)	60, 210, 217, 370, 469, 565, 580, 628, 650
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	271, 541
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 173, 185, 277, 301, 409, 440
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	5 cut(s)	13, 19, 334, 430, 586
HspAI	GCGC	4 cut(s)	194, 293, 458, 590
KasI	GGCGCC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	5 cut(s)	369, 409, 496, 535, 565
Lsp1109I	GCAGC	3 cut(s)	267, 412, 525
LweI	GCATC	1 cut(s)	426
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	478, 484
MfeI	CAATTG	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	137, 215
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	366, 540
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	14, 263
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	7 cut(s)	130, 173, 185, 277, 301, 409, 440
NarI	GGCGCC	1 cut(s)	194
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	5 cut(s)	13, 19, 334, 430, 586
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	617
PagI	TCATGA	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	9 cut(s)	175, 178, 229, 282, 349, 402, 436, 457, 540
PleI	GAGTC	1 cut(s)	590
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	590
PpuMI	RGGWCCY	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	229, 637
PspPPI	RGGWCCY	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	14, 263
SatI	GCNGC	9 cut(s)	174, 177, 228, 281, 348, 401, 435, 456, 539
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	229, 637
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	426
SfcI	CTRYAG	2 cut(s)	310, 539
SfoI	GGCGCC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	14, 263
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	137, 215
SspDI	GGCGCC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	204
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	3 cut(s)	219, 237, 243
TasI	AATT	2 cut(s)	137, 215
TauI	GCSGC	6 cut(s)	176, 179, 230, 350, 437, 458
TfiI	GAWTC	1 cut(s)	75
TscAI	CASTG	2 cut(s)	324, 622
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	3 cut(s)	280, 400, 538
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	3 cut(s)	319, 485, 599
TspRI	CASTG	2 cut(s)	324, 622
VpaK11BI	GGWCC	1 cut(s)	637
XagI	CCTNNNNNAGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.