Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

57217757 .. 57218185

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG310800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCCAACATGATAATGACCTCCTGCAAAGTCCCAATCTCCTCGGCGACCAAGCCCAAGCTCGTCCCCGTCCAAATCTCCATCCCCAAGCTCACCAAACCCCACGTCCTCCAATCCCTTAAATCCCTCTCCCTAATCACCGCCACCTCCCTCACTGTTGCGCCGCCGAGATCTAGAAGGCGGCGCTCTTCTACTTCGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

67

Amino Acids

7.24

Weight (kDa)

12.0

Isoelectric Point (pI)

80.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 164, 181
AcoI	YGGCCR	1 cut(s)	3
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	2 cut(s)	61, 91
AluI	AGCT	2 cut(s)	61, 91
AoxI	GGCC	1 cut(s)	3
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AspLEI	GCGC	2 cut(s)	163, 186
AsuHPI	GGTGA	2 cut(s)	85, 130
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	187
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	2 cut(s)	164, 182
BlsI	GCNGC	2 cut(s)	165, 183
BmgBI	CACGTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	17, 50
BsmFI	GGGAC	2 cut(s)	17, 50
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	170
BspACI	CCGC	3 cut(s)	141, 164, 181
BspANI	GGCC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	163, 186
BstKTI	GATC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	153
CfoI	GCGC	2 cut(s)	163, 186
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	4 cut(s)	5, 55, 61, 91
CviKI_1	RGCY	4 cut(s)	5, 55, 61, 91
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	2 cut(s)	17, 50
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	164, 182
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	164, 182
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	2 cut(s)	162, 185
GluI	GCNGC	2 cut(s)	164, 182
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	163, 186
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	2 cut(s)	161, 184
HinP1I	GCGC	2 cut(s)	161, 184
HphI	GGTGA	2 cut(s)	85, 130
Hpy188III	TCNNGA	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	2 cut(s)	161, 184
Kzo9I	GATC	1 cut(s)	170
LguI	GCTCTTC	1 cut(s)	193
LpnPI	CCDG	1 cut(s)	37
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	1 cut(s)	180
MflI	RGATCY	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	31, 52, 119, 137, 157, 161
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	5
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	13
NmeAIII	GCCGAG	2 cut(s)	23, 192
PciSI	GCTCTTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	165, 183
PsuI	RGATCY	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	164, 182
Sau3AI	GATC	1 cut(s)	170
SetI	ASST	6 cut(s)	23, 63, 93, 108, 149, 203
SmiMI	CAYNNNNRTG	1 cut(s)	14
SsiI	CCGC	3 cut(s)	141, 164, 181
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	197
TauI	GCSGC	2 cut(s)	166, 184
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	160
TspRI	CASTG	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	173
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.