Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Forward (+)

49459696 .. 49460815

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCAAATGTGACGTCATCCGCCGAGCTGTCGCCAACAAGGAGATCTCCCTCGATCTTGCGGGCCTCTCTCCTCGGCTCCTCCCACCCCGATTCTGCAGCCTCCGCATTCGAATCCGTCATTTGGATCTCTCTCCGGTTGGATCCCGATCAACCCGTTTCGCCTTATCCGGATGTTTTCCATCGCTTCCAATCCCTCAAATCCCTTTCCCTAGTCGTCGCCACCTCCCTCACCCCGGCCCCGCCGTCCCTCGCGGCCGAGATCGAGAATGCGGCGCTCTTTGACTTCAACCCGACCCTTCCAATCCGAGCCGTCCAGTTCCTCCTCCTCATGGTGGCCCTCGACAAGATCTACTACTCGCCGCCGGGTAAATTCATGGACGAGCGCAACGCCGACATTAGGGAGAAGCCGGGAGTATCACTATTGCTCGGTTTTGAGAGGGTGGTGGAGTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

152

Amino Acids

16.63

Weight (kDa)

5.32

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccII	CGCG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	7 cut(s)	21, 61, 105, 242, 254, 272, 362
AclWI	GGATC	3 cut(s)	134, 137, 150
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	14
AfiI	CCNNNNNNNGG	5 cut(s)	123, 235, 331, 334, 399
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
AlwI	GGATC	3 cut(s)	134, 137, 150
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	4 cut(s)	63, 237, 255, 336
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	371
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	277, 387
AspS9I	GGNCC	3 cut(s)	63, 238, 337
AsuC2I	CCSGG	3 cut(s)	236, 366, 411
AsuHPI	GGTGA	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	2 cut(s)	229, 296
BcnI	CCSGG	3 cut(s)	236, 366, 411
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	278
BglII	AGATCT	2 cut(s)	44, 348
BisI	GCNGC	4 cut(s)	99, 255, 273, 362
BlsI	GCNGC	4 cut(s)	100, 256, 274, 363
Bme1390I	CCNGG	3 cut(s)	236, 366, 411
BmgT120I	GGNCC	3 cut(s)	63, 238, 337
BmiI	GGNNCC	3 cut(s)	79, 144, 240
BmrFI	CCNGG	3 cut(s)	236, 366, 411
Bpu14I	TTCGAA	1 cut(s)	111
BpuMI	CCSGG	3 cut(s)	236, 366, 411
BsaBI	GATNNNNATC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	73, 234
BsaWI	WCCGGW	2 cut(s)	135, 169
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 235, 331, 334, 399
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	147
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	73, 234
BseGI	GGATG	2 cut(s)	17, 178
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	5 cut(s)	123, 235, 331, 334, 399
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	4 cut(s)	62, 70, 314, 317
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	4 cut(s)	65, 239, 257, 338
BsiEI	CGRYCG	1 cut(s)	258
BsiSI	CCGG	5 cut(s)	136, 170, 236, 365, 410
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	5 cut(s)	123, 235, 331, 334, 399
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	2 cut(s)	107, 274
BsnI	GGCC	4 cut(s)	65, 239, 257, 338
Bsp119I	TTCGAA	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
BspACI	CCGC	7 cut(s)	21, 61, 105, 242, 254, 272, 362
BspANI	GGCC	4 cut(s)	65, 239, 257, 338
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	79, 144, 240
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	3 cut(s)	134, 137, 150
BspT104I	TTCGAA	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	73, 234
BssMI	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
BssNI	GRCGYC	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	17, 178
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	277, 387
BstKTI	GATC	7 cut(s)	47, 57, 129, 145, 151, 264, 351
BstMBI	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSCI	CCNGG	3 cut(s)	234, 364, 409
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	4 cut(s)	44, 126, 142, 348
BstYI	RGATCY	4 cut(s)	44, 126, 142, 348
BstZI	CGGCCG	1 cut(s)	255
BsuRI	GGCC	4 cut(s)	65, 239, 257, 338
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	17, 178
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	2 cut(s)	277, 387
Cfr13I	GGNCC	3 cut(s)	63, 238, 337
CviAII	CATG	2 cut(s)	331, 376
CviJI	RGCY	9 cut(s)	28, 65, 78, 101, 239, 257, 311, 338, 409
CviKI_1	RGCY	9 cut(s)	28, 65, 78, 101, 239, 257, 311, 338, 409
DpnI	GATC	7 cut(s)	46, 56, 128, 144, 150, 263, 350
DpnII	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
EaeI	YGGCCR	1 cut(s)	255
EagI	CGGCCG	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	255
Eco52I	CGGCCG	1 cut(s)	255
FaeI	CATG	2 cut(s)	334, 379
FaiI	YATR	2 cut(s)	332, 377
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	330, 375
FauI	CCCGC	2 cut(s)	54, 249
Fnu4HI	GCNGC	4 cut(s)	99, 255, 273, 362
FokI	GGATG	2 cut(s)	4, 185
Fsp4HI	GCNGC	4 cut(s)	99, 255, 273, 362
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	276, 386
GluI	GCNGC	4 cut(s)	99, 255, 273, 362
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	4 cut(s)	65, 239, 257, 338
HapII	CCGG	5 cut(s)	136, 170, 236, 365, 410
HhaI	GCGC	2 cut(s)	277, 387
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	334, 379
Hin6I	GCGC	2 cut(s)	275, 385
HinP1I	GCGC	2 cut(s)	275, 385
HinfI	GANTC	2 cut(s)	92, 113
HpaII	CCGG	5 cut(s)	136, 170, 236, 365, 410
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	146, 170, 265
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	334, 379
HspAI	GCGC	2 cut(s)	275, 385
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	149, 183, 249, 329, 378, 423
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	7 cut(s)	46, 56, 128, 144, 150, 263, 350
MboI	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
MflI	RGATCY	4 cut(s)	44, 126, 142, 348
MluCI	AATT	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	169
MspI	CCGG	5 cut(s)	136, 170, 236, 365, 410
MspR9I	CCNGG	3 cut(s)	236, 366, 411
Mva1269I	GAATGC	2 cut(s)	107, 274
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	3 cut(s)	236, 366, 411
NdeII	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
NlaIII	CATG	2 cut(s)	334, 379
NlaIV	GGNNCC	3 cut(s)	79, 144, 240
NmeAIII	GCCGAG	3 cut(s)	49, 54, 283
NmuCI	GTSAC	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	111
PctI	GAATGC	2 cut(s)	107, 274
PfeI	GAWTC	2 cut(s)	92, 113
PkrI	GCNGC	4 cut(s)	100, 256, 274, 363
PspN4I	GGNNCC	3 cut(s)	79, 144, 240
PspPI	GGNCC	3 cut(s)	63, 238, 337
PstI	CTGCAG	1 cut(s)	100
PsuI	RGATCY	4 cut(s)	44, 126, 142, 348
SatI	GCNGC	4 cut(s)	99, 255, 273, 362
Sau3AI	GATC	7 cut(s)	44, 54, 126, 142, 148, 261, 348
Sau96I	GGNCC	3 cut(s)	63, 238, 337
ScrFI	CCNGG	3 cut(s)	236, 366, 411
SetI	ASST	3 cut(s)	17, 30, 227
SfcI	CTRYAG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	111
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	7 cut(s)	21, 61, 105, 242, 254, 272, 362
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	234, 364, 409
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	53, 111, 264, 342
TasI	AATT	1 cut(s)	371
TauI	GCSGC	3 cut(s)	257, 275, 364
TfiI	GAWTC	2 cut(s)	92, 113
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	364
TspGWI	ACGGA	1 cut(s)	106
XapI	RAATTY	1 cut(s)	371
XspI	CTAG	1 cut(s)	212
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.