Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Forward (+)

45870852 .. 45874248

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGACGGATTTGAATGCGGAGCTACGGGAATTGGGGTGGGAGGAGCCGAGGAGAGAGGCCTGCAAGATTGAGGGAGATCTTGACGTATTGGATTGGTGGGTTGTGATGATCGGAGAACTCCCCCAAATTGGATTTGAACATTTTATCGGCCGACATGATCAAAGAAAAATCAGCGGGAATGGTGGTGACGGCGGCGGTGGCATTGTCGGAGATAAGGGGGTTGTCGAGAGAAAAGTCGTCGTTTTGGGAGATAGGGATTTGGTGGTGGTAGCTGAAGCGACGGGATTGGGATCGGGAGAGGCGGGTGTAGAGGAGAGAGACGGAGAGGAGGAGGAGGACGAGGAGGGCGGAGATCACGGCGCGGATGTACGTGCGGTAACATCGGGGAAGGGATGCTTCTCGCATTTCGGGGGCATCCAGTTCCTCCCGCTTATGGTGGCCCTCGACAAGATCTACTACTCGCCGCCGGGTAAGATCATGGACGAGCACGACGCCAACATTAGGGAGAAGCCGGGAGTATCACTTGTTGCTTCGGTTTTGAGAGGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

183

Amino Acids

19.78

Weight (kDa)

4.55

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	362
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	3 cut(s)	128, 433, 501
AgsI	TTSAA	2 cut(s)	13, 137
AluBI	AGCT	2 cut(s)	22, 272
AluI	AGCT	2 cut(s)	22, 272
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	3 cut(s)	57, 148, 438
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	2 cut(s)	468, 513
AsuHPI	GGTGA	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	489
BceAI	ACGGC	2 cut(s)	205, 373
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	468, 513
BcoDI	GTCTC	1 cut(s)	312
BglII	AGATCT	2 cut(s)	76, 450
BisI	GCNGC	2 cut(s)	193, 464
BlsI	GCNGC	2 cut(s)	194, 465
Bme1390I	CCNGG	2 cut(s)	468, 513
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	468, 513
BmsI	GCATC	2 cut(s)	383, 423
BpuMI	CCSGG	2 cut(s)	468, 513
BsaAI	YACGTR	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 433, 501
Bse1I	ACTGG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	370, 398, 414
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	3 cut(s)	128, 433, 501
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	7 cut(s)	56, 64, 326, 341, 344, 347, 356
BseX3I	CGGCCG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	59, 150, 440
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	467, 512
BslI	CCNNNNNNNGG	3 cut(s)	128, 433, 501
BsmAI	GTCTC	1 cut(s)	312
BsmBI	CGTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	59, 150, 440
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
BspANI	GGCC	3 cut(s)	59, 150, 440
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
BssNI	GRCGYC	1 cut(s)	492
BstACI	GRCGYC	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	370, 398, 414
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	7 cut(s)	79, 111, 160, 293, 355, 453, 477
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	466, 511
BstUI	CGCG	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	76, 450
BstYI	RGATCY	2 cut(s)	76, 450
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	59, 150, 440
BtsCI	GGATG	3 cut(s)	370, 398, 414
Cac8I	GCNNGC	1 cut(s)	61
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	439
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	2 cut(s)	155, 478
CviJI	RGCY	7 cut(s)	22, 46, 59, 150, 272, 440, 511
CviKI_1	RGCY	7 cut(s)	22, 46, 59, 150, 272, 440, 511
CviQI	GTAC	1 cut(s)	368
DpnI	GATC	7 cut(s)	78, 110, 159, 292, 354, 452, 476
DpnII	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	363
EclXI	CGGCCG	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	59
Eco52I	CGGCCG	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	2 cut(s)	158, 481
FaiI	YATR	3 cut(s)	156, 434, 479
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	2 cut(s)	154, 477
FauI	CCCGC	3 cut(s)	167, 295, 435
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	193, 464
FokI	GGATG	3 cut(s)	377, 401, 405
Fsp4HI	GCNGC	2 cut(s)	193, 464
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	193, 464
HaeIII	GGCC	3 cut(s)	59, 150, 440
HapII	CCGG	2 cut(s)	467, 512
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	2 cut(s)	158, 481
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HpaII	CCGG	2 cut(s)	467, 512
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	113, 209
Hpy188III	TCNNGA	3 cut(s)	80, 226, 294
Hpy99I	CGWCG	3 cut(s)	242, 283, 494
HpyAV	CCTTC	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	84, 370
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	84, 370
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	158, 481
HspAI	GCGC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
LmnI	GCTCC	2 cut(s)	19, 43
LpnPI	CCDG	4 cut(s)	73, 431, 480, 525
LweI	GCATC	2 cut(s)	383, 423
MaeII	ACGT	2 cut(s)	84, 370
MaeIII	GTNAC	2 cut(s)	185, 376
MalI	GATC	7 cut(s)	78, 110, 159, 292, 354, 452, 476
MboI	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
MflI	RGATCY	2 cut(s)	76, 450
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	2 cut(s)	29, 126
MmeI	TCCRAC	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	2 cut(s)	467, 512
MspR9I	CCNGG	2 cut(s)	468, 513
Mva1269I	GAATGC	1 cut(s)	19
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	198
NciI	CCSGG	2 cut(s)	468, 513
NdeII	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
NlaIII	CATG	2 cut(s)	158, 481
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	59
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	194, 465
Ppu21I	YACGTR	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	76, 450
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SatI	GCNGC	2 cut(s)	193, 464
Sau3AI	GATC	7 cut(s)	76, 108, 157, 290, 352, 450, 474
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	2 cut(s)	468, 513
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	4 cut(s)	24, 87, 274, 373
SfaNI	GCATC	2 cut(s)	383, 423
Sse9I	AATT	2 cut(s)	29, 126
SseBI	AGGCCT	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	466, 511
TaiI	ACGT	2 cut(s)	87, 373
TaqI	TCGA	2 cut(s)	225, 444
TasI	AATT	2 cut(s)	29, 126
TauI	GCSGC	2 cut(s)	195, 466
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	2 cut(s)	20, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.