Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

62321840 .. 62322715

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG394700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCAACATGATAATGGCCTCTTCCAAAGTCCCAATCTCCTCGGCGGCCATTGCCAAGCCCAAGCTCGTCCCCGTCCAAATCTCCATCATCCCCAAGCTCACCAAACCCCACCTCCTCCAATCCCTCAAATCCCTCTCCCTAATCGCCGCCACCTCCCTCACCGTCGCGCCGCCGTCCCTCGCCGCCGAGATCGAGAAGGCGGCGCTCTTCGACTTCGACCTGACCCTGCCGATCCAGGCCGTCCAGTTCCTGCTCCTCATGGTGGCCCTCGACAAGATCTACTACTCGCCGCTCGGTAAGTTCATGGACGAGCGCGACGCCGACATCAGGGAGAAGCTGGGGAGCGTGAAGGACACGTCGGCGGAGGTGAAGCAGCTGGAGGAGCAGGGCGTGGCGATCATGAGGGCGGCGAGGGCGGAGATATCGGCGGCGCTGTCGAAGATGAAGAAGGAGACGCAGGCGGAGGTGGAGGTGAAGCTGGCCGAGGGGAGGAAGAAGGTGGAGGCAGAGTTGCAGGAGGCCTTGGGGAAACTGGAGGAGCAGAAGGAGGAGACCTTGAAGTCCTTGGACGCCCAGATTGCTAATCTCAGTGACCAAATTGTCAAGAAGGTTCTTCCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

208

Amino Acids

22.65

Weight (kDa)

6.65

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_B	PF00430	76 - 206	2.5e-13	ATP synthase B/B' CF(0)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	562, 602
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	2 cut(s)	170, 318
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	3 cut(s)	3, 48, 483
AcyI	GRCGYC	2 cut(s)	321, 573
AfiI	CCNNNNNNNGG	3 cut(s)	265, 330, 492
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	67, 100, 340, 379, 481
AluI	AGCT	5 cut(s)	67, 100, 340, 379, 481
Alw26I	GTCTC	2 cut(s)	449, 548
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	7 cut(s)	3, 18, 48, 240, 267, 483, 522
ApeKI	GCWGC	1 cut(s)	376
AspLEI	GCGC	4 cut(s)	172, 208, 318, 436
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	4 cut(s)	94, 154, 382, 487
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	160, 227
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	449, 548
BfoI	RGCGCY	2 cut(s)	209, 437
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	9 cut(s)	48, 150, 173, 186, 204, 293, 377, 411, 432
BlsI	GCNGC	9 cut(s)	49, 151, 174, 187, 205, 294, 378, 412, 433
Bme1390I	CCNGG	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	239
BpmI	CTGGAG	2 cut(s)	401, 557
BsaHI	GRCGYC	2 cut(s)	321, 573
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	42, 486, 525, 567
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 330, 492
Bse1I	ACTGG	2 cut(s)	247, 540
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	4 cut(s)	42, 486, 525, 567
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	265, 330, 492
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	604
BseNI	ACTGG	2 cut(s)	247, 540
BseRI	GAGGAG	6 cut(s)	31, 107, 248, 398, 554, 566
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	2 cut(s)	170, 318
BshFI	GGCC	7 cut(s)	5, 20, 50, 242, 269, 485, 524
BslFI	GGGAC	3 cut(s)	17, 56, 163
BslI	CCNNNNNNNGG	3 cut(s)	265, 330, 492
BsmAI	GTCTC	2 cut(s)	449, 548
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	3 cut(s)	17, 56, 163
BsnI	GGCC	7 cut(s)	5, 20, 50, 242, 269, 485, 524
Bso31I	GGTCTC	1 cut(s)	548
Bsp143I	GATC	4 cut(s)	192, 234, 279, 399
BspANI	GGCC	7 cut(s)	5, 20, 50, 242, 269, 485, 524
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	2 cut(s)	170, 318
BspHI	TCATGA	1 cut(s)	402
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	247, 540
BssECI	CCNNGG	4 cut(s)	42, 486, 525, 567
BssMI	GATC	4 cut(s)	192, 234, 279, 399
BssNI	GRCGYC	2 cut(s)	321, 573
BssT1I	CCWWGG	2 cut(s)	525, 567
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	28, 215
BstACI	GRCGYC	2 cut(s)	321, 573
BstC8I	GCNNGC	2 cut(s)	462, 483
BstDEI	CTNAG	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	2 cut(s)	170, 318
BstH2I	RGCGCY	2 cut(s)	209, 437
BstHHI	GCGC	4 cut(s)	172, 208, 318, 436
BstKTI	GATC	4 cut(s)	195, 237, 282, 402
BstMAI	GTCTC	2 cut(s)	449, 548
BstMBI	GATC	4 cut(s)	192, 234, 279, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 385, 416, 581
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	2 cut(s)	170, 318
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	7 cut(s)	5, 20, 50, 242, 269, 485, 524
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	462, 483
CaiI	CAGNNNCTG	1 cut(s)	253
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	4 cut(s)	172, 208, 318, 436
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	3 cut(s)	329, 466, 581
CviAII	CATG	4 cut(s)	10, 262, 307, 403
DdeI	CTNAG	1 cut(s)	590
DpnI	GATC	4 cut(s)	194, 236, 281, 401
DpnII	GATC	4 cut(s)	192, 234, 279, 399
DrdI	GACNNNNNNGTC	2 cut(s)	562, 602
DseDI	GACNNNNNNGTC	2 cut(s)	562, 602
EaeI	YGGCCR	3 cut(s)	3, 48, 483
Eam1104I	CTCTTC	2 cut(s)	28, 215
EarI	CTCTTC	2 cut(s)	28, 215
EciI	GGCGGA	3 cut(s)	380, 434, 479
Eco130I	CCWWGG	2 cut(s)	525, 567
Eco147I	AGGCCT	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	2 cut(s)	525, 567
ErhI	CCWWGG	2 cut(s)	525, 567
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	4 cut(s)	13, 265, 310, 406
FaiI	YATR	4 cut(s)	11, 263, 308, 404
FaqI	GGGAC	3 cut(s)	17, 56, 163
FatI	CATG	4 cut(s)	9, 261, 306, 402
Fnu4HI	GCNGC	9 cut(s)	48, 150, 173, 186, 204, 293, 377, 411, 432
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	9 cut(s)	48, 150, 173, 186, 204, 293, 377, 411, 432
GlaI	GCGC	4 cut(s)	171, 207, 317, 435
GluI	GCNGC	9 cut(s)	48, 150, 173, 186, 204, 293, 377, 411, 432
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	2 cut(s)	401, 557
HaeII	RGCGCY	2 cut(s)	209, 437
HaeIII	GGCC	7 cut(s)	5, 20, 50, 242, 269, 485, 524
HgaI	GACGC	3 cut(s)	329, 466, 581
HhaI	GCGC	4 cut(s)	172, 208, 318, 436
Hin1I	GRCGYC	2 cut(s)	321, 573
Hin1II	CATG	4 cut(s)	13, 265, 310, 406
Hin6I	GCGC	4 cut(s)	170, 206, 316, 434
HinP1I	GCGC	4 cut(s)	170, 206, 316, 434
HphI	GGTGA	4 cut(s)	94, 154, 382, 487
Hpy188III	TCNNGA	3 cut(s)	196, 403, 607
Hpy99I	CGWCG	3 cut(s)	170, 323, 364
HpyAV	CCTTC	6 cut(s)	193, 346, 445, 493, 541, 604
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 385, 416, 581
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	1 cut(s)	359
Hsp92I	GRCGYC	2 cut(s)	321, 573
Hsp92II	CATG	4 cut(s)	13, 265, 310, 406
HspAI	GCGC	4 cut(s)	170, 206, 316, 434
Kzo9I	GATC	4 cut(s)	192, 234, 279, 399
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	4 cut(s)	261, 345, 385, 541
Lsp1109I	GCAGC	1 cut(s)	388
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	4 cut(s)	194, 236, 281, 401
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	4 cut(s)	192, 234, 279, 399
MboII	GAAGA	6 cut(s)	15, 202, 454, 460, 508, 608
MflI	RGATCY	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	600
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	2 cut(s)	170, 318
MwoI	GCNNNNNNNGC	4 cut(s)	53, 385, 416, 581
NdeII	GATC	4 cut(s)	192, 234, 279, 399
NlaIII	CATG	4 cut(s)	13, 265, 310, 406
NmeAIII	GCCGAG	3 cut(s)	23, 214, 511
NmuCI	GTSAC	1 cut(s)	593
PagI	TCATGA	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	524
PciSI	GCTCTTC	1 cut(s)	215
PkrI	GCNGC	9 cut(s)	49, 151, 174, 187, 205, 294, 378, 412, 433
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	9 cut(s)	48, 150, 173, 186, 204, 293, 377, 411, 432
Sau3AI	GATC	4 cut(s)	192, 234, 279, 399
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	600
SseBI	AGGCCT	1 cut(s)	524
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	525, 567
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	5 cut(s)	195, 213, 219, 273, 440
TasI	AATT	1 cut(s)	600
TauI	GCSGC	8 cut(s)	50, 152, 175, 188, 206, 295, 413, 434
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	295, 461
TspRI	CASTG	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.