Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007596

Physical Location & Seq

Genomic Coordinates Reverse (-)

59126081 .. 59126958

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG384100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTGAGAAGCATCCGTTCCCAACGTTACAGCGTGTACATCTGCACCGTGATCTCCTCCCTCATCCTCTCCGTCTCTCTCCTCTACACCCGCCTCTCCCACTCCCAATCCCACTACTTCAGCTACTGCCACCAAACCCCCATCTCCCAAAACGACGACATTTCTCTCTCCAACCCCCTCATCTCCGACGACTCCATTGCCGCAGTCACCACCATCCCCGCTGATTTTTCTTCGATCATGTCAGTGGGGTTAAGATGTTCAATCGCCGCCACCTCCCTCACCTTAGCCCAGCCATCCCTCACTACTGAGATCGAGAAGGCGACACTCTTTGACTTCGACCTGACCATGCCAATCCAGGCCGTCCAATTCCTCCTCCTCATGATGGCCCTCGACCAGATCTACTACTCTCCACTGGGTAAATTCATGGACGAGCGTGACGCCGACATCAGGGAGAAGCTGGGAGTATCACTGTTGCTCATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

161

Amino Acids

18.0

Weight (kDa)

4.94

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32260
fragaria_vesca	FvH4_5g30810 FvH4_5g32992 FvH4_7g16720
malus_domestica	MD15G1126100.v1.1
prunus_persica	Prupe.1G482000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0429151 RchiOBHm_Chr5g0054961 RchiOBHm_Chr6g0297791
rosa_laevigata	RLG00000026863
rosa_multiflora	Rmu_sc0002438.1_g000015 Rmu_sc0002674.1_g000016 Rmu_sc0003108.1_g000005 Rmu_sc0003162.1_g000005 Rmu_sc0021574.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034140 Rroxscaffold_5G00364670 Rroxscaffold_6G00408390
rosa_samantha	Rh4CG310800 Rh4DG437300 Rh5DG384100 Rh6AG386100 Rh6BG394700 Rh6CG400400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	91, 201, 219, 267
AclI	AACGTT	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	382, 447
AgsI	TTSAA	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	123, 457
AluI	AGCT	2 cut(s)	123, 457
Alw26I	GTCTC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	126
AoxI	GGCC	2 cut(s)	357, 384
ApoI	RAATTY	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	199, 271
BccI	CCATC	4 cut(s)	149, 221, 301, 376
BceAI	ACGGC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	2 cut(s)	201, 267
BlsI	GCNGC	2 cut(s)	202, 268
Bme1390I	CCNGG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 447
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	4 cut(s)	12, 63, 213, 293
BseLI	CCNNNNNNNGG	2 cut(s)	382, 447
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	4 cut(s)	46, 71, 362, 365
BseYI	CCCAGC	2 cut(s)	288, 457
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	359, 386
BslI	CCNNNNNNNGG	2 cut(s)	382, 447
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	359, 386
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	51, 234, 309, 396
BspACI	CCGC	4 cut(s)	91, 201, 219, 267
BspANI	GGCC	2 cut(s)	359, 386
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	51, 234, 309, 396
BssNI	GRCGYC	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	49, 471
BstACI	GRCGYC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	5, 283, 306
BstF5I	GGATG	4 cut(s)	12, 63, 213, 293
BstKTI	GATC	4 cut(s)	54, 237, 312, 399
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	51, 234, 309, 396
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	359, 386
BtsCI	GGATG	4 cut(s)	12, 63, 213, 293
BtsIMutI	CAGTG	3 cut(s)	249, 410, 467
CaiI	CAGNNNCTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	5 cut(s)	238, 346, 379, 424, 478
CviJI	RGCY	6 cut(s)	123, 287, 292, 359, 386, 457
CviKI_1	RGCY	6 cut(s)	123, 287, 292, 359, 386, 457
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	5, 283, 306
DpnI	GATC	4 cut(s)	53, 236, 311, 398
DpnII	GATC	4 cut(s)	51, 234, 309, 396
Eco57I	CTGAAG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	241, 349, 382, 427, 481
FaiI	YATR	5 cut(s)	239, 347, 380, 425, 479
FatI	CATG	5 cut(s)	237, 345, 378, 423, 477
FauI	CCCGC	2 cut(s)	98, 226
Fnu4HI	GCNGC	2 cut(s)	201, 267
FokI	GGATG	3 cut(s)	50, 200, 280
Fsp4HI	GCNGC	2 cut(s)	201, 267
GluI	GCNGC	2 cut(s)	201, 267
GsaI	CCCAGC	2 cut(s)	292, 461
HaeIII	GGCC	2 cut(s)	359, 386
HgaI	GACGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	5 cut(s)	241, 349, 382, 427, 481
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	2 cut(s)	199, 271
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	313, 379
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	2 cut(s)	158, 191
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	49, 471
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	45
HpyF3I	CTNAG	3 cut(s)	5, 283, 306
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	5 cut(s)	241, 349, 382, 427, 481
Kzo9I	GATC	4 cut(s)	51, 234, 309, 396
LpnPI	CCDG	8 cut(s)	302, 341, 353, 368, 398, 407, 433, 443
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	3 cut(s)	26, 205, 434
MalI	GATC	4 cut(s)	53, 236, 311, 398
MboI	GATC	4 cut(s)	51, 234, 309, 396
MboII	GAAGA	1 cut(s)	222
MflI	RGATCY	1 cut(s)	396
MluCI	AATT	2 cut(s)	365, 419
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	195, 210
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
NdeII	GATC	4 cut(s)	51, 234, 309, 396
NlaIII	CATG	5 cut(s)	241, 349, 382, 427, 481
NmuCI	GTSAC	2 cut(s)	205, 434
PagI	TCATGA	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	202, 268
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp1406I	AACGTT	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	2 cut(s)	288, 457
PspGI	CCWGG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	201, 267
Sau3AI	GATC	4 cut(s)	51, 234, 309, 396
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	6 cut(s)	28, 125, 275, 284, 342, 459
SfaNI	GCATC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	365, 419
SsiI	CCGC	4 cut(s)	91, 201, 219, 267
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	49, 471
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	4 cut(s)	233, 312, 336, 390
TasI	AATT	2 cut(s)	365, 419
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	2 cut(s)	203, 269
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	3 cut(s)	249, 417, 474
TseFI	GTSAC	2 cut(s)	205, 434
Tsp45I	GTSAC	2 cut(s)	205, 434
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	2 cut(s)	5, 61
TspRI	CASTG	3 cut(s)	249, 417, 474
XapI	RAATTY	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.